BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486074
Length=642
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56340.1 | Symbols: | Ribosomal protein S26e family protein... 1003 0.0
AT2G40510.1 | Symbols: | Ribosomal protein S26e family protein... 422 3e-117
AT2G40590.1 | Symbols: | Ribosomal protein S26e family protein... 407 7e-113
> AT3G56340.1 | Symbols: | Ribosomal protein S26e family protein
| chr3:20892129-20893443 REVERSE LENGTH=673
Length=673
Score = 1003 bits (543), Expect = 0.0
Identities = 610/643 (95%), Gaps = 1/643 (0%)
Strand=Plus/Plus
Query 1 TATTTTGCAAATTTTAGGGTTACTGAACGCTTCTTCTTCCCTGTCGCCGCATCAAAGAGA 60
||||| |||||| |||||||| ||| || |||||||||||||||||||||||||||||||
Sbjct 4 TATTTCGCAAATATTAGGGTTCCTGCACTCTTCTTCTTCCCTGTCGCCGCATCAAAGAGA 63
Query 61 ACTGAAGCAATAAGCTTTTGAAGCTCTCTGCATCAACATGACTTTCAAGCGTAGGAATGG 120
|||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 64 ACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGACTTTCAAGCGCAGGAATGG 123
Query 121 TGGCAGGAACAAGCATAACCGTGGTCATGTGAAACCAATCAGGTGTTCCAACTGTGGAAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 TGGCAGGAACAAGCATAACCGTGGTCATGTGAAACCAATCAGGTGTTCCAACTGTGGAAA 183
Query 181 GTGTTGCCCCAAGGATAAGGCGATTAAGAGATTCATCGTCAGGAACATTGTTGAGCAGGC 240
||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 184 GTGTTGCCCCAAGGACAAGGCGATTAAGAGATTTATCGTAAGGAACATTGTTGAGCAGGC 243
Query 241 TGCTATTAGAGATGTTCAAGAAGCTAGCGTCTACGAAGCTTACACTCTCCCAAAGCTTTA 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 244 TGCTATTAGAGATGTTCAAGAAGCTAGCGTCTACGAAGGTTACACTCTCCCAAAGCTTTA 303
Query 301 CGCTAAGACGCAATACTGTGTCTCATGTGCTATCCACTCTCACGTTGTTAGAGTCCGATC 360
|||||||||||| ||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 304 CGCTAAGACGCAGTACTGTGTCTCGTGTGCTATCCATTCTCACGTTGTGAGAGTCCGATC 363
Query 361 CCGCACTAACCGTAGGGTTCGTACCCCACCACCTCGTTTCGCCAGACGCAAGGAGGATAC 420
|||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 364 CCGCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGGAGGATAC 423
Query 421 TCCCAAGCCTGGACAGCCTGGTCAGGCTCCTCGCCCTGCTGGTGGTGCTCCTGCTGCTCC 480
|||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 424 ACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGTGGTGCTCCTGCTGCTCC 483
Query 481 TCGTGCCTAAAGACTTCAAGAAGCTGGCAATCCAAAACtttttttATTCTAGTTTCAGTC 540
|||||||| |||||||||||||||||||||||| |||||| || ||||||||||||| ||
Sbjct 484 TCGTGCCTGAAGACTTCAAGAAGCTGGCAATCCGAAACTTCTTATATTCTAGTTTCAATC 543
Query 541 TCTCTGTTGTCTGAAATTTTTGAACATGTTTTCTACATTTTGTTAAAGATGATTTCGCCA 600
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 544 TCTCTTTTGTCTGAAATTTTTGAAGATGTTTTCTACATTTTGTTAAAGATGATTTCGCCA 603
Query 601 TAT-GGAGCTTTATATGTTTCAGACCATTTTACCAGTTGATTT 642
||| ||||||||| | |||||||||||||||||||||||||||
Sbjct 604 TATTGGAGCTTTAAACGTTTCAGACCATTTTACCAGTTGATTT 646
> AT2G40510.1 | Symbols: | Ribosomal protein S26e family protein
| chr2:16918433-16919888 FORWARD LENGTH=740
Length=740
Score = 422 bits (228), Expect = 3e-117
Identities = 324/371 (87%), Gaps = 4/371 (1%)
Strand=Plus/Plus
Query 94 CAACATGACTTTCAAGCGTAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTGAA 153
||| |||||||||||||| ||||| ||||| ||||||||||| ||| | || || || ||
Sbjct 70 CAAGATGACTTTCAAGCGAAGGAACGGTGGGAGGAACAAGCACAACAGAGGACACGTCAA 129
Query 154 ACCAATCAGGTGTTCCAACTGTGG-AAAGTGTTGCCCCAAGGATAAGGCGATTAAGAGAT 212
|||||||| || ||||||||||| ||| |||||||||||||| ||||| |||||||| |
Sbjct 130 CCCAATCAGATGCTCCAACTGTGGCAAA-TGTTGCCCCAAGGACAAGGCCATTAAGAGGT 188
Query 213 TCATCGTCAGGAACATTGTTGAGCAGGCTGCTATTAGAGATGTTCAAGAAGCTAGCGTCT 272
|||| || ||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 189 TCATTGTGAGGAACATTGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCT 248
Query 273 ACGAAGCTTACAC-TCTCCCAAAGCTTTACGCTAAGACGCAATACTGTGTCTCATGTGCT 331
| || | ||||| | | || ||||| || || |||||||||||||||||||| ||||||
Sbjct 249 ATGAGGGATACACAT-TGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTGCT 307
Query 332 ATCCACTCTCACGTTGTTAGAGTCCGATCCCGCACTAACCGTAGGGTTCGTACCCCACCA 391
||||||||||| || ||||||||||| |||||||| ||||| ||||||||||| || |||
Sbjct 308 ATCCACTCTCATGTCGTTAGAGTCCGTTCCCGCACCAACCGCAGGGTTCGTACTCCTCCA 367
Query 392 CCTCGTTTCGCCAGACGCAAGGAGGATACTCCCAAGCCTGGACAGCCTGGTCAGGCTCCT 451
||||||||||||||||||||||||||||||||||||||||| || || || ||||| |||
Sbjct 368 CCTCGTTTCGCCAGACGCAAGGAGGATACTCCCAAGCCTGGGCAACCAGGACAGGCACCT 427
Query 452 CGCCCTGCTGG 462
|| ||||||||
Sbjct 428 CGTCCTGCTGG 438
> AT2G40590.1 | Symbols: | Ribosomal protein S26e family protein
| chr2:16945045-16946419 REVERSE LENGTH=640
Length=640
Score = 407 bits (220), Expect = 7e-113
Identities = 346/407 (85%), Gaps = 7/407 (2%)
Strand=Plus/Plus
Query 98 ATGACTTTCAAGCGTAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTGAAACCA 157
|||||||||||||| ||||| ||||| ||||||||||| ||| | || || || || |||
Sbjct 75 ATGACTTTCAAGCGAAGGAACGGTGGGAGGAACAAGCACAACAGAGGACACGTCAACCCA 134
Query 158 ATCAGGTGTTCCAACTGTGG-AAAGTGTTGCCCCAAGGATAAGGCGATTAAGAGATTCAT 216
||||| || |||||||| || ||| || ||||| ||||| ||||| |||||||| |||||
Sbjct 135 ATCAGATGCTCCAACTGCGGCAAA-TGCTGCCCTAAGGACAAGGCCATTAAGAGGTTCAT 193
Query 217 CGTCAGGAACATTGTTGAGCAGGCTGCTATTAGAGATGTTCAAGAAGCTAGCGTCTACGA 276
|| ||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 194 TGTGAGGAACATTGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGA 253
Query 277 AGCTTACAC-TCTCCCAAAGCTTTACGCTAAGACGCAATACTGTGTCTCATGTGCTATCC 335
| ||||| | | || ||||| || || |||||||||||||||||||| ||||||||||
Sbjct 254 GGGATACACAT-TGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTGCTATCC 312
Query 336 ACTCTCACGTTGTTAGAGTCCGATCCCGCACTAACCGTAGGGTTCGTACCCCACCACCTC 395
|||||||||| ||||||||||| |||||||| ||||||||||||||||| || || || |
Sbjct 313 ACTCTCACGTCGTTAGAGTCCGTTCCCGCACCAACCGTAGGGTTCGTACTCCTCCTCCAC 372
Query 396 GTTTCGCCAGACGCAAGGAGGATACTCCCAAGCCTGGACAGCCTGGTCAGGCTCCTCGCC 455
||||| ||||||||||||||||||||||||||||||||||||| || ||||| ||||| |
Sbjct 373 GTTTCACCAGACGCAAGGAGGATACTCCCAAGCCTGGACAGCCAGGACAGGCCCCTCGTC 432
Query 456 CTGCTGG---TGGTGCTCCTGCTGCTCCTCGTGCCTAAAGACTTCAA 499
| ||||| ||| ||| | ||||| || |||| || ||| || |||
Sbjct 433 CAGCTGGGCCTGGAGCTGCAGCTGCACCGCGTGTCTGAAGCCTGCAA 479
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30994468699
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5