BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486080
Length=1073
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56400.1 | Symbols: WRKY70, ATWRKY70 | WRKY DNA-binding prot... 1389 0.0
AT2G40750.1 | Symbols: WRKY54, ATWRKY54 | WRKY DNA-binding prot... 167 2e-40
> AT3G56400.1 | Symbols: WRKY70, ATWRKY70 | WRKY DNA-binding protein
70 | chr3:20908928-20910481 REVERSE LENGTH=1111
Length=1111
Score = 1389 bits (752), Expect = 0.0
Identities = 896/963 (93%), Gaps = 19/963 (2%)
Strand=Plus/Plus
Query 34 caccaaaaacttcctcaaaaatcaacaaatggatactaataaagcaaaaaagcttaaaGT 93
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 46 CACCAAAAACTTCCTCAAAACT-AACAAATGGATACTAATAAAGCAAAAAAGCTTAAAGT 104
Query 94 GATGAACCAACTCGTCGAAGGCCACGAGTTAACCACTCAGCTTCAGCAACTCCTCTCTCA 153
|||||||||||||| |||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 105 TATGAACCAACTCGTTGAAGGCCATGACTTAACAACTCAGCTTCAGCAACTCCTCTCTCA 164
Query 154 ACCCGGGTCCGGTCTAGGTCCAGCGGAGGATCTAGTGGCTAAAATCTTAGGGTCTTTCAA 213
|||||||||||||| | | ||||||||||||||||||||||||| || ||||||
Sbjct 165 ACCCGGGTCCGGTC----T--A---GAGGATCTAGTGGCTAAAATCTTAGTGTGTTTCAA 215
Query 214 TAACAGCATCTCCATTCTTGATACCTTCGAACCCATCTCCTCCTCCTTCTCATCCCTCGC 273
||||| ||||||| |||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 216 TAACACCATCTCCGTTCTTGATACCTTCGAACCCATCTCCTCCT-C--CTCATCCCTCGC 272
Query 274 CGCGGTTGAGGGCTCTCAAAATGCTTCATGCGACAACGACGGCAAGTTTGAAGATTCCGG 333
||| |||||||| ||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 273 CGCCGTTGAGGGATCTCAAAATGCTTCATGTGATAACGACGGCAAGTTTGAAGATTCCGG 332
Query 334 CGATAGTCGGAAAAGATTGGGACCCGTTAAGGGTAAAAGAGGATGCTACAAAAGAAAGAA 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 333 CGATAGTCGGAAAAGATTGGGACCCGTTAAGGGTAAAAGAGGATGCTACAAAAGAAA-AA 391
Query 394 A-AGATCGGAGACGTGGACTAAAGAATCGACTATACTTGAGGACGAATTTTCTTGGAGGA 452
| |||||||||||||| |||| ||| ||||||||||||||||||| ||||||||||||||
Sbjct 392 AGAGATCGGAGACGTGTACTATAGAGTCGACTATACTTGAGGACGCATTTTCTTGGAGGA 451
Query 453 AATATGGACAAAAGGAGATTCTTAATGCCAAATTCCCAAGGAGTTACTTTAGATGCACAC 512
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 452 AATATGGACAAAAGGAGATTCTTAATGCCAAATTCCCAAGAAGTTACTTTAGATGCACAC 511
Query 513 ACAAGTACACTCAAGGGTGCAAGGCAACAAAGCAAGTCCAGAAGGTGGAGCTCGAACCCA 572
||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 512 ACAAGTATACCCAAGGGTGCAAGGCAACAAAGCAAGTCCAGAAGGTTGAGCTCGAACCCA 571
Query 573 AGATGTTCAGTATCACATACATAGGAAACCACACGTGTAACACCAACGCAGAAACACCCA 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 572 AGATGTTCAGTATCACATACATAGGAAACCACACGTGTAACACCAACGCAGAAACTCCCA 631
Query 633 AGAGCAAGACTTGTGACCATCATGATGAGATCTTCATGGATTCCGAAGAGCATAAGAATC 692
||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||
Sbjct 632 AGAGCAAGACTTGTGACCATCATGATGAGATCTTCATGGATTCCGAAGATCACAAGAGTC 691
Query 693 CTAGTTTGA-CGACCTCAATGAAGGAGGAAGA-AGAGAATCATCATCATCATGGTTCGTC 750
||||||| | | |||||||||||||| ||||| | | ||||| |||||||||||||||
Sbjct 692 CTAGTTT-ATCTACCTCAATGAAGGAAGAAGACA-ATCCTCATCGTCATCATGGTTCGTC 749
Query 751 CACGGAGAATGACTTGTCATTGGTGTGGCCAGATATGATTTTCGAAGAAGATTATCATCA 810
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 750 CACGGAGAATGACTTGTCATTGGTGTGGCCAGAAATGGTTTTCGAAGAAGATTATCATCA 809
Query 811 TCAGGCCATTTACGTCAATGGGGAAACTAGTACATCTATCAATGATTTGGGTTCTCCGGA 870
|||||||| ||||||||||||| |||| |||||||||||| ||| ||||||||||| |||
Sbjct 810 TCAGGCCAGTTACGTCAATGGGAAAACGAGTACATCTATCGATGTTTTGGGTTCTCAGGA 869
Query 871 TCACTTGGTGTTTGGAGCTGGCGGCGATTTCGGGTTCAGCGAAAATGAGCACTTCTCTAT 930
|| | |||||||||||| |||||||||||||| ||| |||||||||||||||||||||||
Sbjct 870 TCTCATGGTGTTTGGAGGTGGCGGCGATTTCGAGTTTAGCGAAAATGAGCACTTCTCTAT 929
Query 931 CTTCAGTCCATGTTCGAATCTATCTTGAGTTTACCACTACTATAGGACTAAGGCTATGAG 990
||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 930 CTTCAGTTCATGTTCGAATCTATCTTGAGTTTACCACTACTATAGGACTAAGACCATGAG 989
Query 991 TTT 993
|||
Sbjct 990 TTT 992
> AT2G40750.1 | Symbols: WRKY54, ATWRKY54 | WRKY DNA-binding protein
54 | chr2:17000454-17002468 REVERSE LENGTH=1337
Length=1337
Score = 167 bits (90), Expect = 2e-40
Identities = 199/251 (79%), Gaps = 10/251 (4%)
Strand=Plus/Plus
Query 361 TAAGGGTAAAAGAGGATGCTACAAAAGAAAGAAAAGATCGGAGACGTGGACT-AAAGAAT 419
||||||||||||||||||||||| ||||||| ||||| | || ||| | |||
Sbjct 498 TAAGGGTAAAAGAGGATGCTACACTAGAAAGACGAGATCACATACAAGGA-TCGTGGAAG 556
Query 420 CGACTA-TACTTGAGGACGA-ATTTTCTTGGAGGAAATATGGACAAAAGGAGATTCTTAA 477
| | | | | ||| ||| | || | ||||||||||||||||||||||||||||||||||
Sbjct 557 CTAAAAGTTC-TGAAGAC-AGATATGCTTGGAGGAAATATGGACAAAAGGAGATTCTTAA 614
Query 478 TGCCAAATTCCCAAGGAGTTACTTTAGATGCACACACAAGTACA-CTCAAGGGTGCAAGG 536
| ||| ||||||||| |||||||||||||||||||||||| || | ||||| ||||| |
Sbjct 615 TACCACATTCCCAAGAAGTTACTTTAGATGCACACACAAGC-CAACGCAAGGATGCAAAG 673
Query 537 CAACAAAGCAAGTCCAGAAGGTGGAGCTCGAACCCAAGATGTTC-AGTATCACATACATA 595
||||||||||||| ||||| ||| | || | |||||||| | |||||||||||
Sbjct 674 CAACAAAGCAAGTTCAGAAACAGGATCAAGATTCTGAGATGTTCCAA-ATCACATACATT 732
Query 596 GGAAACCACAC 606
|| |||||||
Sbjct 733 GGCTACCACAC 743
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52559970615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5