BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486082
Length=5054
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56410.2 | Symbols: | Protein of unknown function (DUF3133)... 6650 0.0
AT3G56408.1 | Symbols: | other RNA | chr3:20915497-20921340 FO... 1775 0.0
> AT3G56410.2 | Symbols: | Protein of unknown function (DUF3133)
| chr3:20916172-20921206 REVERSE LENGTH=4828
Length=4828
Score = 6650 bits (3601), Expect = 0.0
Identities = 4349/4698 (93%), Gaps = 100/4698 (2%)
Strand=Plus/Plus
Query 402 AGTTGGCAAGTGGTAAAGACTTGAAGCATATGTTCAGAGGCATGAGGAGTAAAACCGTGC 461
||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 185 AGTTGGCAAGTAGTAAAGACTTGAAGCATATGTTCAGAGGTATGAGGAGTAGAACCGTGC 244
Query 462 CTGGATTATCTTCTCAGTCTAGGATCGTGAGATGTCCTAAGTGCCACAAACTTCTCCAGG 521
| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 245 CCGGATTATCTTCTCAATCTAGAATCGTGAGATGTCCTAAGTGCCACAAACTTCTCCAGG 304
Query 522 AACCTTTAGATGCGACTTCTTACAAATGTGGTGGATGCGACTCTATTCTTCATGCAAAAC 581
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 305 AACCTTTAGATGCTACTTCTTACAAATGTGGTGGATGCGACTCGATTCTTCATGCAAAAC 364
Query 582 GTTGGGAA-CTGGAAGGCAATGATCACACAAACACTATTCCTCAGGCTCTCCTTTCTTCT 640
|||||||| || || ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 365 GTTGGGAACCT-GACGGCAATGATCACACAAACACTATTCCTGAGGCTCTCCTTTCTTCT 423
Query 641 CAAAACCGCAGTTTAAGTGCTGAGGTAGAATCTCCAGAAGATGGTAGTAGAACTCCAATG 700
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 CAAAACCGTAGTTTAAGTGCTGAGGTAGAATCTCCAGAAGATGGTAGTAGAACTCCAATG 483
Query 701 AGAAGTACTCACCGGGAATACAATTCAAGGGCATCGCCTTCTATTGAAAGGGGTTATCAT 760
|||| |||||||||||| |||||||||||| ||||| ||||| ||||||| |||||||||
Sbjct 484 AGAACTACTCACCGGGAGTACAATTCAAGGCCATCGACTTCTGTTGAAAGAGGTTATCAT 543
Query 761 CCAGAAACTGTTTACAAGCATGAGACATCCGATATCCGCAGAGAATGGATGAGAAGGACT 820
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 544 CCAGAAACTGTTTACAAGCCTGAGACATCTGATATCCGCAGAGAATGGATGAGAAGGACT 603
Query 821 GATGACTTCAGTGAGACCAGTGATTCTGATGCGTTTGCTTCAGCAAGAAGCTCTCCATAT 880
|||||||||||||||||| |||||||||||| |||| |||||| ||||||||||||||||
Sbjct 604 GATGACTTCAGTGAGACCGGTGATTCTGATGTGTTTACTTCAGAAAGAAGCTCTCCATAT 663
Query 881 AACACACGCAGCAATGCCT-CGCAATGGGCACGACATGAGGGGAGATATGAAGATCTACC 939
|||||||||||||||| || |||||||||||| ||||||||| ||||| | ||||| |||
Sbjct 664 AACACACGCAGCAATG-CTGCGCAATGGGCACAACATGAGGGAAGATACGCAGATCCACC 722
Query 940 TCAGGTTCCTTTCTATCCAGCAAGTCCTTCCCCTTCTTCTGCATATGAATATGGCTACAG 999
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 TCGGGTTCCTTTCTATCCAGCAAGTCCTTCCCCTTCTTCTGCATATGAATATGGCTACAG 782
Query 1000 TAGTCCTTTTCACGGGTCTCACGTTTCTGCATCAGAGCAGTCTTATTATCATCATCAACC 1059
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 783 TAGTCCTTTTCACGGGTCTTACGTTTCTGCATCAGAGCAGTCTTATTATCATCAACAACC 842
Query 1060 AAACCAATTCAAGCAGTACGGAAGAGAAGGCTGGTTTCAAGAATCTTCTGTTGCTTCACC 1119
|||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 843 AAACCAATTCGAGCAGTATAGCAGAGAAGGCTGGTTTCAAGAATCTTCTGTTGCTTCACC 902
Query 1120 TACTCGTTTTCAGGGTGAGACATCTGATGGAAAGTACTATCACAGGTCTTCTCAGTCTCA 1179
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 TACTCGTTTTCCGGGTGAGACATCTGATGGAAAGTACTATCACAGGTCTTCTCAGTCTCA 962
Query 1180 GCTGCATGATCTTCAGTATCATAATATTTATGAACCCAGTAGCTCTGTAATCCCACATCA 1239
||| ||||||||||||||||||||| |||||||||| ||||| |||| || ||| |||||
Sbjct 963 GCTACATGATCTTCAGTATCATAATCTTTATGAACCAAGTAGATCTGAAACCCCGCATCA 1022
Query 1240 CTCTGTGTACTCTGAGCGTAATTATGTAGCAGCTGCAGCGCCACACCGCTCTACATACTC 1299
|||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||
Sbjct 1023 CTCTGTGTACTCTGAGCGTAGTTATGTACCAGCTGCTGCGCCACACCGCTCTACATACTC 1082
Query 1300 GGAGCATTCCGTAGGGATTTCTAAGAGTGACACAAGTAGTGAAAAGATCTCA-T-TAAGG 1357
|||||||| ||||||||||||||||||||||||||||||||||||| || | |||||
Sbjct 1083 TGAGCATTCTGTAGGGATTTCTAAGAGTGACACAAGTAGTGAAAAGA--GCATTCTAAGG 1140
Query 1358 AACAAAAAACGGTATGTCAGGGAAAGGAATCCGGTGGTGAAGCGCCATATTCTTCCTTCA 1417
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1141 AACAAAAAACGGTATGTCAGGGAAAGGAATCCGGTAGTGAAGCGCCATATTCTCCCTTCA 1200
Query 1418 GCAGGCGGTGCACCTTTTGCAACTTGTTCCTATTGCTTGGAACTTCTACATCTTCCTCAG 1477
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1201 GCCGGCGGTGCACCTTTTGCAACTTGTTCCTATTGCTTGGAACTTCTACAGCTTCCTCAA 1260
Query 1478 GTGTCTCCCCAAGGAAAACGTAAAAGATATCAAGTGAGATGTGGCAGTTGTTCCGGTGTA 1537
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GTGTCTCCCCAAGGAAAACGTCAAAGATATCAAGTGAGATGTGGCAGTTGTTCCGGTGTA 1320
Query 1538 CTTAAGTTCTCTATTCGAGAGAAAGCAGATACTGTCCTGGATTCACCTAGCTTTGTGGAT 1597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 CTTAAGTTCTCTATTCGAGAGAAAGCAGATACTGTCCTGGATTCACCTAGCTTTGTGGAT 1380
Query 1598 TATGGCATGGATTTTGCAGATGAGAATGTTACTAATCATCAGGATTCAGCATCAGAAGGT 1657
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 1381 TATGGCATGGATTTTGCAGATGAGACTGTTACTAATCACCAGGATTCAGCATCAGAAGGT 1440
Query 1658 TATGAAGAGATTTATCCTGATGGAAATCATCTGCCGTGTTTAGACGACGATTTTGGAGAT 1717
||||||||||| |||||||||||| ||||||| |||||||||||||||||| ||||||
Sbjct 1441 CATGAAGAGATTAATCCTGATGGAAGTCATCTGACGTGTTTAGACGACGATTCTGGAGAA 1500
Query 1718 ACAATCTGCAAAAGCAACGATGCTGTTATTTTGAGTCAAAG--T-CTAGAAACATTTGAG 1774
|||||||||||||| |||||||||||||| |||||||||| | |||||||||||||||
Sbjct 1501 ACAATCTGCAAAAGTAACGATGCTGTTATATTGAGTCAAAAAATTCTAGAAACATTTGAG 1560
Query 1775 GATAAGGGGATTAAAGAAGACATGAGGAATATATCCGGCAAACTATTAGATTTGAAATTG 1834
||||| ||||||||||||||||| |||||||||||| |||| | |||||||||||||||
Sbjct 1561 GATAAAGGGATTAAAGAAGACATAAGGAATATATCCACCAAATTTTTAGATTTGAAATTG 1620
Query 1835 GAGGCATTGCAGCCTCATCTAAAACCTGTGGTGAACCCCAGATTAAGGGAGCAACAACCT 1894
|||||||| |||||||||||||||||| ||| ||||| ||||||||| ||||||||||||
Sbjct 1621 GAGGCATTACAGCCTCATCTAAAACCTATGGGGAACCGCAGATTAAGCGAGCAACAACCT 1680
Query 1895 GCATCAAGTGAGACTATTGGAGAGACTTCCAGGATTCATCTAGAGCAATCTCAGGAAGCT 1954
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1681 ACATCAAGTGAGACTATTGGAGAGACTTCCAAGATTCATCTAGAGCAATCTCAGGAAGCT 1740
Query 1955 CATTCAGAAAAGTCAACCGAGATGGATAATAACAATTGTGAAAGAGCCTGGTGCGATTTA 2014
|||||||||||||||||||||||||||||||||| |||||| | || |
Sbjct 1741 CATTCAGAAAAGTCAACCGAGATGGATAATAACATTTGTGA-------T------AT--A 1785
Query 2015 GAAGAGCTTGAATATGAGAAGAACGAAATTATTAAGCCAGAAGAAATTGTAGGAGAAGGA 2074
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1786 GAAGAGCCTGAATATGAGAAGAACGAAATTATTAAGCCAGAAGAAATTGTAGGAGAAGGA 1845
Query 2075 TCAGGTGAGTCCTTGGAAGTTCCAGTATACCAGAACGAAAGGATGAGTGAATCAAGTGAA 2134
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1846 TCAGGTGAGTCCTTGGAAGTTCCAGTAAACCAGAACGAAAGGATGAGTGAATCAAGTGAA 1905
Query 2135 GAAGATGAGAGAGTTGCAGAGAGATCGGTATCTCATAGTGTGGAAATTCTATACGAGAAC 2194
|||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||
Sbjct 1906 GAAGATGAGAGAGTTGCAGAGAGATCGGTATCTCATAGTGAGGAACTTCTATACAAGAAA 1965
Query 2195 GAATACGTCAGTGAAACACGTGTACAGTCTGAGAATACCGGAGACGCTAACGAGTCTGAG 2254
||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||
Sbjct 1966 GAATACGTCAGTGAAACACGTGTACAGTCTGAGAATACCGGAGACACTTACGAGTTTGAA 2025
Query 2255 TGGGAGGAGACTCAAGAAAATGAAGAATATGGAGGTGAAAGTACATTGGAAGAGATCGGA 2314
||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||
Sbjct 2026 TGGGAGGAGACTCAAGAAACTGAAGAATATGAAGGTGAAAGTACATTAGAAGAGATCGGA 2085
Query 2315 GACAAACCGCAGTTGCATTTGGAGAAATATAGGTACATTCGAGATTCTATCTGTGACAGC 2374
||||||||||||||||||||||| |||| |||||||| |||||||||||| |||||||||
Sbjct 2086 GACAAACCGCAGTTGCATTTGGATAAATCTAGGTACACTCGAGATTCTATATGTGACAGC 2145
Query 2375 AGCTTAAGCTATGGTGAACCATTTGAGGATACATCAGTCAAGGAAGATACGGAGCACATA 2434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2146 AGCTTAAGCTATGGTGAACCATTTGAGGATACATCAGTCAAGGAAGATACGGAGCACATA 2205
Query 2435 TCAAACACAATTTCAGATG--A--TAA-CT-C------TT-TGG-T-GAA-T----GA-G 2473
||||||||||||||||||| | | | || | || | | ||| | | |
Sbjct 2206 TCAAACACAATTTCAGATGCGAAGTCAGCTACAACACATTCTCCCTTGAACTCTTTGGTG 2265
Query 2474 AATCAGA----G-G-TTTATAGGACATCCTGACCAATCAGGTGAAGCTACAGTAACAATA 2527
||| ||| | | ||||||||||||| |||||||||||| || |||||||||||||||
Sbjct 2266 AATGAGAATCAGAGGTTTATAGGACATCTTGACCAATCAGGCGAGGCTACAGTAACAATA 2325
Query 2528 TCTAGTATCCAGGAGCAGTCCAAGTATGAGTATGAGAATTTAAGCGAAAGACAAGAATTG 2587
|| || ||||||||||| ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 2326 TCCAGGATCCAGGAGCACTCCAAGTATGAATATGAGAATTTAAGCGAAAGACAAGAGTTG 2385
Query 2588 GAAATGACCATTAGTGACAGAGT-ACG-GTATGAGTTAGAGGAGTTTAGATACGAGACAA 2645
||||||||||||||||||||||| ||| ||| |||||||||||| ||||||||||||||
Sbjct 2386 GAAATGACCATTAGTGACAGAGTCACGTGTA--AGTTAGAGGAGTCTAGATACGAGACAA 2443
Query 2646 ATGAAACTCTTGAGCCGAGCAAGGTGGTCGAAGATGGATCAGTTGTTTCTTTCGCGAAGG 2705
||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||
Sbjct 2444 ATGAAACTCTTGAGCCGAGCAAGGTGGGCGAAGATGGATCTCTTGTTTCTTTCGAGAAGG 2503
Query 2706 CGAGTGAGGCATTCGAAACAATCATAGAAGGCGAGACAGGTGGCGAGAGACTGGTATCTC 2765
||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 2504 TGAGCGAGGCATTCGAAACAATCATAGAAGGCAAGACAGGTGAAGAGAGACTGGTATCTC 2563
Query 2766 ATCAAATGGATTCTCCAAACGAGAAAGTAGAAAATTCTTATGGAACACTAGAACCAGTTT 2825
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||
Sbjct 2564 ATCAAATGGATTCTCCAAACGAGAATGTAGAAAATTCTTATGGAACATTAGAACCGGTTT 2623
Query 2826 ATCTAGAAGAAAGCGGGTTTGCAGGTGAAA-ATACGTGGGAAGGGACAGTAGAAGATAGA 2884
|||||||||||||||||||||||||||||| | || |||||||||||| |||||||||||
Sbjct 2624 ATCTAGAAGAAAGCGGGTTTGCAGGTGAAAGA-ACATGGGAAGGGACAATAGAAGATAGA 2682
Query 2885 GCGGCGTTGCATTTGGAGGAATATGAAAGCAACTATGAGAATTACAGCAGACCATTTGAA 2944
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2683 GCGGGGTTACATTTGGAGGAATATGAAAGCAACTATGAGAATTACAGCAGACCATTTGAA 2742
Query 2945 TGGACTTCAGAAACAGCTCCAACATTTGGCATGCATGATTATGAGCTAGGGACAATACTT 3004
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2743 TGGACTTCAGAAACAGCTCCAACATTTCGCATGCATGATTATGAGCTAGGGACAATACTT 2802
Query 3005 GAACCAGACGAGGATGCTGATGGAAGATCAGAATCCAGTTCACGGGGTTCCTTCAATGAT 3064
|||||||||||| ||||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct 2803 GAACCAGACGAGTATGCTGACGGAAGATCAGAATCAAGTTCACGGGGCTCCTTCAATGAC 2862
Query 3065 GATGGAAGTTCAGAAGAGAGGGTCATTTTTCATGAGTCTCAAGATGCTATACCCGAGCAG 3124
|||||| ||||||||||||||||| |||||||||||||||||| ||||||||| ||||||
Sbjct 2863 GATGGAGGTTCAGAAGAGAGGGTCGTTTTTCATGAGTCTCAAGTTGCTATACCTGAGCAG 2922
Query 3125 TCCCACGATGAGTATGAGAGCTCAAGCAAAAGACAAGAGTTGAGTGACACCGTTTTTGAC 3184
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2923 TCCCACTATGAGTATGAGAACTCAAGCAAAAGACAAGAGTTGAGTGACACCGTTTTTGAC 2982
Query 3185 ATAGTAAGGTCTGAATTACAGGAGTATAGATATGAGACCAATGAAACACTTGAGCCAAGC 3244
|||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 2983 ATAGCAAGGTCTGAATTACAAGAGTATAGATATGAGAGAAATGAAACACTTGAGCCAAGT 3042
Query 3245 AAGATGGTTGGAGATGAATCTGTTGTTCCTGTTGAGAAGGCGGGTGAAACTTTCATAAGC 3304
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 3043 AAGATGGTTGGAGATGGATCTGTTGTTCCTGTTGAGAAGGCGGGTGAAACTTTCATAAGC 3102
Query 3305 GAAAAGGATGAAGAGAGCTCGGTATCTCATCAAATGGAGTCTCAAAATGAAGATATGGAA 3364
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3103 AAAAAGAATGAAGACAGCTCGGTATCTCATCAAATGGAGTCTCAAAATGAAGATATGGAA 3162
Query 3365 AATTCCTACGGAACTATAGAACCGGTTTATCTGGAAGGAAGCAGATGTGAAAGTGAAAAT 3424
|||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 3163 AATTCCTACGGAACAAAAGAACCGGTTTATCCGGAAGGAAGCAGATGTGAAAGTGAAAAT 3222
Query 3425 CCATGGGCAGAAACAATGGGAGATGAAGTGGGGTTGAAGTTAGAGGAATATAAAAGCAAT 3484
|||||||||| ||||||||||||| || |||||||||||||||||||||||| ||||||
Sbjct 3223 TCATGGGCAGAGACAATGGGAGATGGAGCGGGGTTGAAGTTAGAGGAATATAATAGCAAT 3282
Query 3485 CCATTTGAATGGACTTCCGAACGAGCTCCAGCATTCCATCTGCATGAGTATGAACAATGG 3544
||||||||||||||||| ||| |||| ||||||| ||||||||||||||||||| ||||
Sbjct 3283 CCATTTGAATGGACTTCTGAAAAAGCTGCAGCATTTCATCTGCATGAGTATGAACGATGG 3342
Query 3545 ACAGTGCCTGAACCAGAAGAGGATGCTAATGGAAGATCAATACCCAGTTCACGGGATTCC 3604
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 3343 ACAGTGCCTGAACCAGAAGAGGATGCTAATGAAAGATCAATAACCAGTTCACGGGATTCC 3402
Query 3605 TTTAATGACCATGAAAGTTTAAAAGAGATAGTTGTGTCTCATGAGGAGGAGCCCTGGCTA 3664
|||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 3403 TTTAATGACCATGAAAATTTAAAAGGGATAGCTGTGTCTCATGAGGAGGAGCCCTGGCTA 3462
Query 3665 GTGGATGAGAAC-GAAACGGAAGCACTAAAAGTTGGTGTAATGGTGGAAGATGGACCTTC 3723
|||||||||||| ||| ||||||| |||||||||||||||||||||||||||| ||| ||
Sbjct 3463 GTGGATGAGAACAGAA-CGGAAGCTCTAAAAGTTGGTGTAATGGTGGAAGATGAACCATC 3521
Query 3724 GCTGCACCTGACGAAATGCGAAAATGAATCAATGAAATTGGAAGAGACACTTGAATGGAC 3783
||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||
Sbjct 3522 GCTGCACCTGACGAAATTTGAAAACGAAACAATGAAATTGGAAGAGACACTTGAATGGAC 3581
Query 3784 TTCAGAAAGAGCTCCAACATTTCGTCTGCATGAGTATGAACTAGGGGAAATGCTTGAATC 3843
||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||
Sbjct 3582 TTCAGAAAGAGCTCCAACATTTCGTCTACCTGAGTATGAGCTAGGGGAAATGCTTGAATC 3641
Query 3844 AGACAACGATGTTGATGAAAGATCAGATTACAGTTCAAGGGGTTCCTTCAATGACCATGG 3903
||||||||| ||||||||||||||||| || ||||||| ||||||||||||||| ||||
Sbjct 3642 AGACAACGACGTTGATGAAAGATCAGAATATAGTTCAAAGGGTTCCTTCAATGATCATG- 3700
Query 3904 AAATTCAAAAGAAAGAGAGTTGTTCAATGAGGAGGAGCCCCAGCTGGTGATTGACGGCAG 3963
|||||| || || ||| ||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 3701 AAATTCCAA-GA--GAG--TTGTTAAATGAGGAGGATCCCCAGCTGGTGATTGATGGCAG 3755
Query 3964 AACCGAAGC-GCTACAAGTAGGCGAAGTGGCAAAAGATACGGTATCACTGCACTTGGAGG 4022
||||||||| | |||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 3756 AACCGAAGCTG-TACAAGTAGGCGAAATGGCAAAAGATACAGTATCACTGCACTTGGAGG 3814
Query 4023 AATGCGGAGATGAATCAATGAAACTGGATGAGACATTTGAATGGACTTCAGGGAGAACTT 4082
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 3815 AATGCGGAAATGAATCAATGAAACTGGATGAGACATTTGAATGGACGTCAGGGAGAACTT 3874
Query 4083 TAACGTTTCGTCGCCATCGGTATGAGGTAGGGACAAAGCTTGCACCAGATGAGGATGCTG 4142
||||||||||||||||| |||||||||||| ||||||||||| | |||| ||||||||||
Sbjct 3875 TAACGTTTCGTCGCCATGGGTATGAGGTAGAGACAAAGCTTGAAGCAGACGAGGATGCTG 3934
Query 4143 ATGGAAGATCAGAATCTAGTTCAAGGGGTTCCTTCAATGATCGTGGAAGTTCAAAAGAGA 4202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3935 ATGGAAGATCAGAATCTAGTTCAAGGGGTTCCTTCAATGATCGTGGAAGTTCAAAAGAGA 3994
Query 4203 GAGCTGTACTTCACGAGGATGGGCCTTGGCTGGTGGATGATTATGAAAACAACGCACTAA 4262
||||||||||||||||||||||| |||||||||||||||||||||||| ||| || ||||
Sbjct 3995 GAGCTGTACTTCACGAGGATGGGTCTTGGCTGGTGGATGATTATGAAACCAAAGCGCTAA 4054
Query 4263 AAGTAGGCGTAATGGCAGAAGATGGATC---GCTGCACTTAGAGAA-GTGCaaaaatgaa 4318
|||||||||||||||||||||||||||| |||||| || ||||| | || |||||| |
Sbjct 4055 AAGTAGGCGTAATGGCAGAAGATGGATCATCGCTGCAGTTGGAGAAAG-GCGAAAATGGA 4113
Query 4319 aaaaTGGAATTGGACGAGACACTTGAACAAAGGGATGATATATTCAGGCTCAGTCTTGAT 4378
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 4114 AAAATGGATTTGGACGAGACACTTGAACCAAGGGATGATATATTCAGGCTCAGTCTTGAT 4173
Query 4379 GACACACTTGAGCAAGATAGGATGACGTTTCATTTAAAGATGTCTCAAGATAAGCAAGAA 4438
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 4174 GACACACTTGAGCAAGAAAGGATGACGTTTCATTTAAAGATGTCTCAAGATAAGCAAGAA 4233
Query 4439 AATCTAAGGCAGACCTTTAAACAAGGTGAGGCTGGAAAAGATATACCAGCATTTGGTTCA 4498
| ||||||||||||||||||||||||||| |||| ||||||| | | || | | | |
Sbjct 4234 AGTCTAAGGCAGACCTTTAAACAAGGTGATGCTGAAAAAGAT-T-C-AG-AC--G-T--A 4284
Query 4499 ACAGTATCTTCAGAGGGCCATGAATCTCCAAGTAAAATGGCAGAACTAGATAGTGACACT 4558
| | |||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 4285 ----T-T-TTCAGAAGGCCATGAATTTCCAAGTAAAATGGCAGAACTAGATAGTGACACT 4338
Query 4559 GAAGAGGAGATATTGGAAGACCACTTAGAACATTTGCAGGAAGAGAATGGGAAGTCAGGT 4618
|||||||||||| ||||||| || ||||||||||||||| ||||||||| ||||| | ||
Sbjct 4339 GAAGAGGAGATAGTGGAAGAACAATTAGAACATTTGCAGAAAGAGAATGAGAAGTTAAGT 4398
Query 4619 CTAACCTTTGAACCACATGCTCATATCTACAACACAACGGAGCCTTCTGAAATTGTGGGT 4678
||||||||||||| ||||| ||| ||||||| ||||||||||||||||||||||||||||
Sbjct 4399 CTAACCTTTGAACAACATGATCACATCTACAGCACAACGGAGCCTTCTGAAATTGTGGGT 4458
Query 4679 TTGCGTCATGCGTTATATCAAACACAAAATTCACCTCTACGATCGCCTCTCACATCACCA 4738
||||||||||||||||| ||||| |||||||||||||||||||| |||||||| ||||||
Sbjct 4459 TTGCGTCATGCGTTATACCAAACGCAAAATTCACCTCTACGATCACCTCTCACTTCACCA 4518
Query 4739 ATTCATACTCCCATTGGTTCTCCGCTGCATTACCTGATGGCTTCACAAATACGTTCTCCA 4798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4519 ATTCATACTCCCATTGGTTCTCCGCTGCATTACCTGATGGCTTCACAAATACGTTCTCCA 4578
Query 4799 ATAGCTTCACCAATGCATTCCCACATAGTTTCACCACTGCGTTCTCCCATCAACTCATCT 4858
||||||||| |||||||| |||||||||||||| || ||||||||||||||||| |||
Sbjct 4579 ATAGCTTCAACAATGCATAGTCACATAGTTTCACCGCTTCGTTCTCCCATCAACTCCTCT 4638
Query 4859 GGATCACTCTCTGATGTATTGCTCTTCAGCAAGAAAACTTGATGACAAGAAAACATATAA 4918
||||||||||||||||||||| |||||||||||||||||||||| || ||||||| ||||
Sbjct 4639 GGATCACTCTCTGATGTATTGTTCTTCAGCAAGAAAACTTGATGGCACGAAAACAGATAA 4698
Query 4919 GTATCCCTCCAAGCTTTCCGC-CATAGTTCAAGACTTTACCTGCAATACAAAA-CAGTGT 4976
| || |||||||||||| | |||| || |||||||||||||| |||||||| ||||||
Sbjct 4699 GCATTGTTCCAAGCTTTCCCCACATACTTGAAGACTTTACCTGCGATACAAAAACAGTGT 4758
Query 4977 ATACATTGTCTCAATTTTGTTTTCGAGTGGCTGGATTACATGTAAGGTTTTCTACAGATA 5036
|||||||| ||||||||||||| ||||| ||| |||||||||||||||||||
Sbjct 4759 GTACATTGTTTCAATTTTGTTTTTGAGTG-----ATT----GTAAGGTTTTCTACAGATA 4809
Query 5037 ATAAATCAATTCATTGAG 5054
||||||||||||||||||
Sbjct 4810 ATAAATCAATTCATTGAG 4827
Score = 187 bits (101), Expect = 8e-46
Identities = 113/119 (95%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 181 AAATCATGATGAAGAAGAAGACACAGAGCAGATCCCAATCTTCTTCTACCAAGAAAAGTC 240
||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
Sbjct 68 AAACCATGATGAAGAAGAAGAAACAGAGCAGATCCCAGTCTTCTTCTACCAAGAAAACTT 127
Query 241 TTGAACCATCCTCAGATTCTTCACCTTCACCTAGGCTACTCTCCATTATCCGTTCTAAG 299
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 128 TTGAACCATCCTCAGATTCTTCACCTTCACCTAGGCTCCTCTCCATTATCCGTTCTAAG 186
Score = 135 bits (73), Expect = 3e-30
Identities = 130/156 (83%), Gaps = 9/156 (6%)
Strand=Plus/Plus
Query 2933 AGACCATTTGAATGGACTTCAGAAACAGCTCCAACATTTGGCAT-G-CATGATTATGAGC 2990
||| ||||||||||||| |||| | | || ||| ||| | | | |||| ||||||
Sbjct 3845 AGA-CATTTGAATGGACGTCAGGGAGAACTTTAACGTTT--CGTCGCCATGGGTATGAGG 3901
Query 2991 TAGGGACAATA-CTTGAACCAGACGAGGATGCTGATGGAAGATCAGAATCCAGTTCACGG 3049
||| ||||| | |||||| ||||||||||||||||||||||||||||||| |||||| ||
Sbjct 3902 TAGAGACAA-AGCTTGAAGCAGACGAGGATGCTGATGGAAGATCAGAATCTAGTTCAAGG 3960
Query 3050 GGTTCCTTCAATGAT-GATGGAAGTTCAGAAGAGAG 3084
||||||||||||||| | |||||||||| |||||||
Sbjct 3961 GGTTCCTTCAATGATCG-TGGAAGTTCAAAAGAGAG 3995
> AT3G56408.1 | Symbols: | other RNA | chr3:20915497-20921340
FORWARD LENGTH=2361
Length=2361
Score = 1775 bits (961), Expect = 0.0
Identities = 1091/1154 (95%), Gaps = 8/1154 (1%)
Strand=Plus/Minus
Query 575 GCAAAACGTTGGGAA-CTGGAAGGCAATGATCACACAAACACTATTCCTCAGGCTCTCCT 633
||||||||||||||| || || ||||||||||||||||||||||||||| ||||||||||
Sbjct 1663 GCAAAACGTTGGGAACCT-GACGGCAATGATCACACAAACACTATTCCTGAGGCTCTCCT 1605
Query 634 TTCTTCTCAAAACCGCAGTTTAAGTGCTGAGGTAGAATCTCCAGAAGATGGTAGTAGAAC 693
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1604 TTCTTCTCAAAACCGTAGTTTAAGTGCTGAGGTAGAATCTCCAGAAGATGGTAGTAGAAC 1545
Query 694 TCCAATGAGAAGTACTCACCGGGAATACAATTCAAGGGCATCGCCTTCTATTGAAAGGGG 753
||||||||||| |||||||||||| |||||||||||| ||||| ||||| ||||||| ||
Sbjct 1544 TCCAATGAGAACTACTCACCGGGAGTACAATTCAAGGCCATCGACTTCTGTTGAAAGAGG 1485
Query 754 TTATCATCCAGAAACTGTTTACAAGCATGAGACATCCGATATCCGCAGAGAATGGATGAG 813
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1484 TTATCATCCAGAAACTGTTTACAAGCCTGAGACATCTGATATCCGCAGAGAATGGATGAG 1425
Query 814 AAGGACTGATGACTTCAGTGAGACCAGTGATTCTGATGCGTTTGCTTCAGCAAGAAGCTC 873
||||||||||||||||||||||||| |||||||||||| |||| |||||| |||||||||
Sbjct 1424 AAGGACTGATGACTTCAGTGAGACCGGTGATTCTGATGTGTTTACTTCAGAAAGAAGCTC 1365
Query 874 TCCATATAACACACGCAGCAATGCCT-CGCAATGGGCACGACATGAGGGGAGATATGAAG 932
||||||||||||||||||||||| || |||||||||||| ||||||||| ||||| | ||
Sbjct 1364 TCCATATAACACACGCAGCAATG-CTGCGCAATGGGCACAACATGAGGGAAGATACGCAG 1306
Query 933 ATCTACCTCAGGTTCCTTTCTATCCAGCAAGTCCTTCCCCTTCTTCTGCATATGAATATG 992
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1305 ATCCACCTCGGGTTCCTTTCTATCCAGCAAGTCCTTCCCCTTCTTCTGCATATGAATATG 1246
Query 993 GCTACAGTAGTCCTTTTCACGGGTCTCACGTTTCTGCATCAGAGCAGTCTTATTATCATC 1052
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1245 GCTACAGTAGTCCTTTTCACGGGTCTTACGTTTCTGCATCAGAGCAGTCTTATTATCATC 1186
Query 1053 ATCAACCAAACCAATTCAAGCAGTACGGAAGAGAAGGCTGGTTTCAAGAATCTTCTGTTG 1112
| ||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||
Sbjct 1185 AACAACCAAACCAATTCGAGCAGTATAGCAGAGAAGGCTGGTTTCAAGAATCTTCTGTTG 1126
Query 1113 CTTCACCTACTCGTTTTCAGGGTGAGACATCTGATGGAAAGTACTATCACAGGTCTTCTC 1172
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 CTTCACCTACTCGTTTTCCGGGTGAGACATCTGATGGAAAGTACTATCACAGGTCTTCTC 1066
Query 1173 AGTCTCAGCTGCATGATCTTCAGTATCATAATATTTATGAACCCAGTAGCTCTGTAATCC 1232
|||||||||| ||||||||||||||||||||| |||||||||| ||||| |||| || ||
Sbjct 1065 AGTCTCAGCTACATGATCTTCAGTATCATAATCTTTATGAACCAAGTAGATCTGAAACCC 1006
Query 1233 CACATCACTCTGTGTACTCTGAGCGTAATTATGTAGCAGCTGCAGCGCCACACCGCTCTA 1292
| ||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||
Sbjct 1005 CGCATCACTCTGTGTACTCTGAGCGTAGTTATGTACCAGCTGCTGCGCCACACCGCTCTA 946
Query 1293 CATACTCGGAGCATTCCGTAGGGATTTCTAAGAGTGACACAAGTAGTGAAAAGATCTCA- 1351
||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 945 CATACTCTGAGCATTCTGTAGGGATTTCTAAGAGTGACACAAGTAGTGAAAAGA--GCAT 888
Query 1352 T-TAAGGAACAAAAAACGGTATGTCAGGGAAAGGAATCCGGTGGTGAAGCGCCATATTCT 1410
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 887 TCTAAGGAACAAAAAACGGTATGTCAGGGAAAGGAATCCGGTAGTGAAGCGCCATATTCT 828
Query 1411 TCCTTCAGCAGGCGGTGCACCTTTTGCAACTTGTTCCTATTGCTTGGAACTTCTACATCT 1470
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 827 CCCTTCAGCCGGCGGTGCACCTTTTGCAACTTGTTCCTATTGCTTGGAACTTCTACAGCT 768
Query 1471 TCCTCAGGTGTCTCCCCAAGGAAAACGTAAAAGATATCAAGTGAGATGTGGCAGTTGTTC 1530
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 767 TCCTCAAGTGTCTCCCCAAGGAAAACGTCAAAGATATCAAGTGAGATGTGGCAGTTGTTC 708
Query 1531 CGGTGTACTTAAGTTCTCTATTCGAGAGAAAGCAGATACTGTCCTGGATTCACCTAGCTT 1590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 CGGTGTACTTAAGTTCTCTATTCGAGAGAAAGCAGATACTGTCCTGGATTCACCTAGCTT 648
Query 1591 TGTGGATTATGGCATGGATTTTGCAGATGAGAATGTTACTAATCATCAGGATTCAGCATC 1650
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 647 TGTGGATTATGGCATGGATTTTGCAGATGAGACTGTTACTAATCACCAGGATTCAGCATC 588
Query 1651 AGAAGGTTATGAAGAGATTTATCCTGATGGAAATCATCTGCCGTGTTTAGACGACGATTT 1710
||||||| ||||||||||| |||||||||||| ||||||| ||||||||||||||||||
Sbjct 587 AGAAGGTCATGAAGAGATTAATCCTGATGGAAGTCATCTGACGTGTTTAGACGACGATTC 528
Query 1711 TGGAGATACAATCT 1724
|||||| |||||||
Sbjct 527 TGGAGAAACAATCT 514
Score = 536 bits (290), Expect = 7e-151
Identities = 372/409 (91%), Gaps = 16/409 (4%)
Strand=Plus/Minus
Query 181 AAATCATGATGAAGAAGAAGACACAGAGCAGATCCCAATCTTCTTCTACCAAGAAAAGTC 240
||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
Sbjct 2160 AAACCATGATGAAGAAGAAGAAACAGAGCAGATCCCAGTCTTCTTCTACCAAGAAAACTT 2101
Query 241 TTGAACCATCCTCAGATTCTTCACCTTCACCTAGGCTACTCTCCATTATCCGTTCTAAGG 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2100 TTGAACCATCCTCAGATTCTTCACCTTCACCTAGGCTCCTCTCCATTATCCGTTCTAAGG 2041
Query 301 TG-------A-CTtc-t-ctctctctct-TC-T-GATCTTTGATTCTTCCTATAACAGGT 347
|| | |||| | |||||||||| || | ||||||||||| ||||| | ||||||
Sbjct 2040 TGACTTCTCATCTTCTTCCTCTCTCTCTCTCTTAGATCTTTGATTTTTCCTGTTACAGGT 1981
Query 348 TCTCGAGTTCTGGATTTGAGCTGATGTGCTTGTCtttttttCTTTTCTTTCT-GTAGTTG 406
||| |||||||||||||||||||| ||||||||| |||| |||||| ||| | |||||||
Sbjct 1980 TCTTGAGTTCTGGATTTGAGCTGAAGTGCTTGTC-TTTTATCTTTT-TTTTTGGTAGTTG 1923
Query 407 GCAAGTGGTAAAGACTTGAAGCATATGTTCAGAGGCATGAGGAGTAAAACCGTGCCTGGA 466
|||||| |||||||||||||||||||||||||||| |||||||||| ||||||||| |||
Sbjct 1922 GCAAGTAGTAAAGACTTGAAGCATATGTTCAGAGGTATGAGGAGTAGAACCGTGCCCGGA 1863
Query 467 TTATCTTCTCAGTCTAGGATCGTGAGATGTCCTAAGTGCCACAAACTTCTCCAGGAACCT 526
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1862 TTATCTTCTCAATCTAGAATCGTGAGATGTCCTAAGTGCCACAAACTTCTCCAGGAACCT 1803
Query 527 TTAGATGCGACTTCTTACAAATGTGGTGGATGCGACTCTATTCTTCATG 575
|||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1802 TTAGATGCTACTTCTTACAAATGTGGTGGATGCGACTCGATTCTTCATG 1754
Score = 472 bits (255), Expect = 2e-131
Identities = 310/337 (92%), Gaps = 1/337 (0%)
Strand=Plus/Minus
Query 4624 CTTTGAACCACATGCTCATATCTACAACACAACGGAGCCTTCTGAAATTGTGGGTTTGCG 4683
|||||||| ||||| ||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 515 CTTTGAACAACATGATCACATCTACAGCACAACGGAGCCTTCTGAAATTGTGGGTTTGCG 456
Query 4684 TCATGCGTTATATCAAACACAAAATTCACCTCTACGATCGCCTCTCACATCACCAATTCA 4743
|||||||||||| ||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct 455 TCATGCGTTATACCAAACGCAAAATTCACCTCTACGATCACCTCTCACTTCACCAATTCA 396
Query 4744 TACTCCCATTGGTTCTCCGCTGCATTACCTGATGGCTTCACAAATACGTTCTCCAATAGC 4803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 395 TACTCCCATTGGTTCTCCGCTGCATTACCTGATGGCTTCACAAATACGTTCTCCAATAGC 336
Query 4804 TTCACCAATGCATTCCCACATAGTTTCACCACTGCGTTCTCCCATCAACTCATCTGGATC 4863
|||| |||||||| |||||||||||||| || ||||||||||||||||| ||||||||
Sbjct 335 TTCAACAATGCATAGTCACATAGTTTCACCGCTTCGTTCTCCCATCAACTCCTCTGGATC 276
Query 4864 ACTCTCTGATGTATTGCTCTTCAGCAAGAAAACTTGATGACAAGAAAACATATAAGTATC 4923
|||||||||||||||| |||||||||||||||||||||| || ||||||| ||||| ||
Sbjct 275 ACTCTCTGATGTATTGTTCTTCAGCAAGAAAACTTGATGGCACGAAAACAGATAAGCATT 216
Query 4924 CCTCCAAGCTTTCCGC-CATAGTTCAAGACTTTACCT 4959
|||||||||||| | |||| || ||||||||||||
Sbjct 215 GTTCCAAGCTTTCCCCACATACTTGAAGACTTTACCT 179
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 252189222461
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5