BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486086
Length=1600
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56440.1 | Symbols: ATATG18D, ATG18D | homolog of yeast auto... 2591 0.0
AT2G40810.1 | Symbols: ATATG18C, ATG18C | homolog of yeast auto... 1014 0.0
AT3G56450.1 | Symbols: ALPHA-SNAP1 | alpha-soluble NSF attachme... 113 4e-24
AT3G56460.1 | Symbols: | GroES-like zinc-binding alcohol dehyd... 102 1e-20
> AT3G56440.1 | Symbols: ATATG18D, ATG18D | homolog of yeast autophagy
18 (ATG18) D | chr3:20926001-20928988 FORWARD LENGTH=1656
Length=1656
Score = 2591 bits (1403), Expect = 0.0
Identities = 1547/1614 (96%), Gaps = 19/1614 (1%)
Strand=Plus/Plus
Query 1 AATGACGACAGTTGACTAACCCAAACAAACGAATaaaaaaagaaaaaaaTCGGAAATTTT 60
|||||||||||||||||||| ||||||| |||||||| |||||| |||||||||||||||
Sbjct 10 AATGACGACAGTTGACTAACGCAAACAACCGAATAAAGAAAGAACAAAATCGGAAATTTT 69
Query 61 CGACGAA-AT--CAT--TACAAGTTAGTATTACAGAGACGAACCTTCTCATAGCCAAGTC 115
||||||| || || |||||||||||| |||||||||| | ||||||||||||||||
Sbjct 70 CGACGAAGATAAAATCATACAAGTTAGTA-TACAGAGACG-A--TTCTCATAGCCAAGTC 125
Query 116 ATTG--TT--G-ATTTGAGAAG---ATTATAGCATCAGGATCGAGATTGTTCTTCGTCCA 167
|||| || | | | | ||| ||||||||||||||||||||||||||| |||||||
Sbjct 126 ATTGATTTGAGAAGATAACAAGATTATTATAGCATCAGGATCGAGATTGTTCGTCGTCCA 185
Query 168 TTGAAGCAGCATTTTCCTTCTTCAAAGATCGCGTTTGCTTCTTCTCGCTGTTTTCGTTTT 227
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 186 TTGAAGCAGCATTTTCCTTCTTCAAAGATCGCTTTTGGTTCTTCTCGCTGTTTTCGTTTT 245
Query 228 CTGAATCGCTTGCAACAATTGCAACGCTTCACATATTAAGGAGAAATGGACCCTCGAAGA 287
|| ||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||
Sbjct 246 CT-AATCGCTTGCAACAATTTCAACGTTTCACATATTAAGGAGAAATGGATCCTCGGAGA 304
Query 288 AACTTCCAACCAGGTGGCTATGACTCCCGGAATACCTTCACTTCAGGATCTTTTGGGCCT 347
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 305 AACTTCCAACCAGGTGGCTATGACTCTCGGAATACCTTCACTTCAGGATCTTTTGGGCCT 364
Query 348 CCAGATTTTGGTGAAAGTGATGAAGCAGAGTTGGTTTCTGTTTCTTGGAATCAGGATTAC 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 CCAGATTTTGGTGAAAGTGATGAAGCAGAGTTGGTTTCTGTTTCTTGGAATCAGGATTAC 424
Query 408 AGCTGTTTTGCTGCTGGTACGAGCCATGGTTTTCGTATATACAACTGTGAACCGTTCAAG 467
|| |||||||||||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct 425 AGTTGTTTTGCTGCTGGCACTAGCCATGGTTTTCGTATATATAACTGTGAACCGTTCAAG 484
Query 468 GAAACTTTCAGACGAGAGCTGAAGGGTGGAGGGTTTAAAATTGTAGAGATGCTTTTCCGG 527
|||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 485 GAAACTTTTAGGCGAGAGCTGAAGGATGGAGGGTTTAAAATTGTAGAGATGCTTTTCCGG 544
Query 528 AGTAATATCTTGGCGCTTGTTGGTGGTGGACCTAACTCTCAGTACCCTTCAAATAAAGTA 587
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 545 AGTAATATCTTGGCGCTTGTTGGTGGTGGACCTAACTCCCAGTACCCTTCAAATAAAGTA 604
Query 588 TTGATTTGGGATGATCATCAGAGCCGCTGCATCAGTGAGTTTACTTTTCGGTCGGAAATT 647
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 605 TTGATTTGGGATGATCATCAGGGGCGCTGCATCAGTGAGTTTACTTTTCGGTCGGAAATT 664
Query 648 CGTGCAGTGAAGTTAAGAAGAGATCGAATTGTCGTTGTTCTTGAGCACAAGATATATGTC 707
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 665 CGTGCAGTGAAGTTAAGAAGAGATCGAATTGTTGTTGTTCTTGAGCACAAGATATATGTC 724
Query 708 TACAATTTTATGGATCTAAGACTTCTTCATCAGATTGAAAATCTGGCAAATCCAAGGGGA 767
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 725 TACAATTTTATGGATCTAAGACTTCTTCATCAGATTGAAAATATGGCAAATCCAAGGGGA 784
Query 768 CTATGTTGCCTCTCTCATCATATGAATACATCTGTCCTGGCCTGTCCAGGTATTCGTCGA 827
|||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||
Sbjct 785 CTATGTTGCCTCTCTCATCACATGAATACATCTGTCTTGGCTTGTCCAGGTATTCGTCGA 844
Query 828 GGAGAGGTCCGAGTTGAACATTTTGGTCTTAACATGGTTCAAATCATCAATGCTCATGAT 887
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 845 GGAGAGGTCCGAGTTGAACATTTTGGGCTTAACATGGTTCAAATCATTAATGCTCATGAT 904
Query 888 TCTAATCTCGCGTGCATGACCTTGACATTGGATGGCTTGCTCCTTGCAACTGCCAGTACA 947
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 TCTAATATCGCGTGCATGACCTTGACATTGGATGGCTTGCTCCTTGCAACTGCCAGTACA 964
Query 948 AAGGGAACTCTGATTAGAATTTTCAACACGATGGACGGAACTCGTCTGCAAGAGGTCCGA 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 AAGGGAACTCTGATTAGAATTTTCAACACGATGGACGGAACTCGTCTGCAAGAGGTCCGA 1024
Query 1008 AGAGGCGTGGACAGAGCAGATATCTATAGCATTGCTCTATCACCAAACGTGCAGTGGCTT 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1025 AGAGGCGTGGACAGAGCAGATATCTATAGCATTGCTCTATCACCAAACGTGCAGTGGCTT 1084
Query 1068 GCAGTATCAAGCGACAAGGGGACTGTTCACATTTTCTCTCTCAGAGTGAGGGTTATTGGG 1127
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1085 GCAGTATCAAGCGACAAGGGGACTGTTCACATTTTCTCTCTCAGAGTGAGAGTTATAGGG 1144
Query 1128 GAGGACGCATACTCCACTGAACATGAGACTTCTTCAAATTCCCTGCAGCCTCTTGTTTCT 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 GAGGACGCATACTCCACTGAACATGAGACTTCTTCAAATTCCCTGCAGCCTCTTGTTTCT 1204
Query 1188 CCAGCCAGTGGTGCCAACCCCGGTTCGTCATTGTCTTTTCTGAGAGGAGTTCTACCAAAA 1247
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1205 CCAGCCAGTGGTGCCAACCCTGGTTCGTCATTGTCTTTTCTGAGAGGTGTTCTACCAAAA 1264
Query 1248 TATTTCAGCTCGGAATGGTCATTTTCCCAGTTCCATGTACCAGAAGTCACCCAATACTTT 1307
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1265 TATTTCAGCTCGGAATGGTCATTTTCTCAGTTCCATGTACCTGAAGTCACCCAATACTTT 1324
Query 1308 GCAGCATTTGGCGCTCAGAACACAATTGCGATTATTGGCTTGGACGGAAGTTTCTACAGG 1367
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1325 GCAGCATTTGGTGCTCAGAACACAATTGCAATTATTGGCTTGGACGGAAGTTTCTACAGG 1384
Query 1368 TGCAATTTCGATCCAGTGAACGGAGGAGAGATGACTCAGCTTGAACATTTCCATTTTCTG 1427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1385 TGCAATTTCGATCCAGTGAACGGAGGAGAGATGACTCAGCTTGAACATTTCCATTTTCTG 1444
Query 1428 AAGCCAGATAGCCCAAGATAGTTAGAACACGTGCTTGGTTTGAGTTTTATATACATAACA 1487
|||| ||||||||| ||||||| ||| ||||||||||||||||||||||| |||||||||
Sbjct 1445 AAGCAAGATAGCCCGAGATAGTCAGACCACGTGCTTGGTTTGAGTTTTATGTACATAACA 1504
Query 1488 ATTGGCTCTGTATATAGATTTGGTGAAACCGCATACGATTTTATTCTTCCAAGCTTTACT 1547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1505 ATTGGCTCTGTATATAGATTTGGTGAAACCGCATACGATTTTATTCTTCCAAGCTTTACT 1564
Query 1548 TGATTGAAGGAAA-TGTATTCTTGATTGGAACAATGTATATACAAAAAGGATTT 1600
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1565 TGATTGAAGGAAAATGTATTCTTGATTGGAACAATGTATATACAAAAAGGATTT 1618
> AT2G40810.1 | Symbols: ATATG18C, ATG18C | homolog of yeast autophagy
18C | chr2:17032464-17034600 FORWARD LENGTH=1576
Length=1576
Score = 1014 bits (549), Expect = 0.0
Identities = 915/1089 (84%), Gaps = 36/1089 (3%)
Strand=Plus/Plus
Query 369 GAAGCAGAGTTGGTTTCTGTTTCTTGGAATCAGGATTAC-AGCTGTTTTGCTGCTGGTAC 427
||||||||||| |||||||| | |||||||||||||| | || |||||||| ||||| ||
Sbjct 217 GAAGCAGAGTTAGTTTCTGTGTGTTGGAATCAGGATT-CAAGTTGTTTTGCAGCTGGAAC 275
Query 428 GAGCCATGGTTTTCGTATATACAACTGTGAACCGTTCAAGGAAACTTTCAGACGAGAGCT 487
||| ||||||||||||||||| ||||||||||| ||||| ||||||||||| || |||||
Sbjct 276 GAGTCATGGTTTTCGTATATATAACTGTGAACCTTTCAAAGAAACTTTCAGGCGTGAGCT 335
Query 488 GAAGGGTGGAGGGTTTAAAATTGTAGAGATGCTTTTCCGGAGTAATAT-CTTGGCGCTTG 546
|||| || || |||||||| ||||||||||||||||| || ||||| | |||| ||||
Sbjct 336 AAAGGACGGTGGTTTTAAAATCGTAGAGATGCTTTTCCGTAGCAATATAC-TGGCACTTG 394
Query 547 TTGGTGGTGGACCTAACTCTCAGTACCCTTCAAATAAAGTATTGATTTGGGATGATCATC 606
||||||||||||||||||||||||| ||||||| |||||| | ||||||||||||||||
Sbjct 395 TTGGTGGTGGACCTAACTCTCAGTATCCTTCAAGCAAAGTACTAATTTGGGATGATCATC 454
Query 607 AGAGCCGCTGCATCAGTGAGTTTACTTTTCGGTCGGAAATTCGTGCAGTGAAGTTAAGAA 666
||||||| ||||| ||||| ||| | ||| |||| || |||||||||||||| |||||||
Sbjct 455 AGAGCCGTTGCATTAGTGAATTTGCATTTAGGTCTGAGATTCGTGCAGTGAAATTAAGAA 514
Query 667 GAGATCGAATTGTCGTTGTTCTTGAGCACAAGATATATGTCTACAATTTTATGGATCTAA 726
| ||||| ||||| ||||||||||| || ||||| ||||| || || ||||||||||| |
Sbjct 515 GGGATCGGATTGTTGTTGTTCTTGAACATAAGATTTATGTTTATAACTTTATGGATCTTA 574
Query 727 GACTTCTTCATCAGATTGAAAATCTGGCAAATCCAAGGGGACTATGTTGCCTCTCTCATC 786
||||||||||||||||||||| || || ||||| || ||| | |||||||| |||||||
Sbjct 575 GACTTCTTCATCAGATTGAAACTCAAGCTAATCCTAGAGGATTGTGTTGCCTTTCTCATC 634
Query 787 ATA-TGAATACATCTGTCCTGGCCTGTCCAGGTATTCG-TCGAGGAGAGGTCCGAGTTGA 844
|| | ||||| ||||| |||| || || ||| | | |||||||||| | || |||||
Sbjct 635 ATTCT-AATACGTCTGTGTTGGCTTGCCCTGGTCT-CAATCGAGGAGAGATTCGTGTTGA 692
Query 845 ACATTTTGGTCTTAACATGGTTCAAATCATCAATGCTCATGATTCTAA-TCTCGCGTGCA 903
|||||| || ||||||||||| |||||||| |||||||||||||| || | | ||||| |
Sbjct 693 ACATTTCGGGCTTAACATGGTACAAATCATAAATGCTCATGATTC-AAGTATTGCGTGTA 751
Query 904 TGACCTTGACATTGGATGGCTTGCTCCTTGCAACTGCCAGTACAAAGGGAACTCTGATTA 963
||||||||||||||||||| ||| | ||||||||||| ||||||||||||||||||||||
Sbjct 752 TGACCTTGACATTGGATGGTTTGTTGCTTGCAACTGCTAGTACAAAGGGAACTCTGATTA 811
Query 964 GAATTTTCAACACGATGGACGGAACTCGTCTGCAAGAGGTCCGAAGAGGCGTGGACAGAG 1023
|||| |||||||| ||||| ||||||||| |||||||||| |||||||| || |||||||
Sbjct 812 GAATCTTCAACACAATGGATGGAACTCGTTTGCAAGAGGTACGAAGAGGAGTCGACAGAG 871
Query 1024 CAGATATCTATAGCATTGCTCTATCACCAAACGTGCAGTGGCTTGCAGTATCAAGCGACA 1083
||||||| ||||||||||| || |||||||| ||||||||||| || |||||||| ||||
Sbjct 872 CAGATATATATAGCATTGCACTTTCACCAAATGTGCAGTGGCTGGCGGTATCAAGTGACA 931
Query 1084 AGGGGACTGTTCACATTTTCTCTCTCAGAGTGAGGGTTATTGGGGAGGACGCATACTCCA 1143
||||||||||||||||||||||||| ||||| |||||| |||||||||| | || ||||
Sbjct 932 AGGGGACTGTTCACATTTTCTCTCTTAGAGTTAGGGTTGTTGGGGAGGATTCTTATTCCA 991
Query 1144 CTGAACATG-AGACT-TCTT--CA-AA-----TT---C-----C-CTGCA-GCCTCTTGT 1183
||||| ||| || || | || || || || | | ||||| | | |||||
Sbjct 992 CTGAAAATGGAG-CTCTGTTGACACAACAAAATTATTCTAATTCTCTGCAAGGC-CTTGT 1049
Query 1184 TTCTCCAGCCAGTGGTGCCAACCCCGGTTCGTCATTGTCTTTTCTGAGAGGAGTTCTACC 1243
||||||| ||| |||| |||| ||||||||||||||||| ||| ||||||| ||||||||
Sbjct 1050 TTCTCCAACCATTGGTACCAATCCCGGTTCGTCATTGTCGTTTATGAGAGGTGTTCTACC 1109
Query 1244 AAAATATTTCAGCTCGGAATGGTCATTTTCCCAGTTCCATGTACCAGAAGTCACCCAATA 1303
||| |||||||||||||||||||||| | | ||||| |||||| |||||||||| ||||
Sbjct 1110 AAAGTATTTCAGCTCGGAATGGTCATATGCACAGTTTCATGTATCAGAAGTCACACAATT 1169
Query 1304 CTTTGCAGCATTTGGC-GCTCAGAACACAATTGCGATTATTGGCTTGGACGGAAGTTTCT 1362
||| |||||||||||| | | | ||||| |||| ||||| ||| |||| ||||||||||
Sbjct 1170 CTTCGCAGCATTTGGCAG-TAACAACACGGTTGCTATTATCGGCATGGATGGAAGTTTCT 1228
Query 1363 ACAGGTGCAA-TTTCGATCCAGTGAACGGAGGAGAGATGACTCAGCTTGAACATTTCCAT 1421
|| | |||| ||| ||||| |||||||||||||||||| || || ||| || ||||
Sbjct 1229 ACCGATGCAGCTTT-GATCCCGTGAACGGAGGAGAGATGGGGCAACTGGAATATATCCAC 1287
Query 1422 TTTCTGAAG 1430
||| |||||
Sbjct 1288 TTTATGAAG 1296
> AT3G56450.1 | Symbols: ALPHA-SNAP1 | alpha-soluble NSF attachment
protein 1 | chr3:20930557-20932869 FORWARD LENGTH=1146
Length=1146
Score = 113 bits (61), Expect = 4e-24
Identities = 64/65 (98%), Gaps = 1/65 (2%)
Strand=Plus/Plus
Query 1537 CAAGCTTTACTTGATTGAAGG-AAATGTATTCTTGATTGGAACAATGTATATACAAAAAG 1595
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1062 CAAGCTTTACTTGATTGAAGGAAAATGTATTCTTGATTGGAACAATGTATATACAAAAAG 1121
Query 1596 GATTT 1600
|||||
Sbjct 1122 GATTT 1126
> AT3G56460.1 | Symbols: | GroES-like zinc-binding alcohol dehydrogenase
family protein | chr3:20932791-20934540 REVERSE LENGTH=1400
Length=1400
Score = 102 bits (55), Expect = 1e-20
Identities = 58/59 (98%), Gaps = 1/59 (2%)
Strand=Plus/Minus
Query 1543 TTACTTGATTGAAGG-AAATGTATTCTTGATTGGAACAATGTATATACAAAAAGGATTT 1600
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1400 TTACTTGATTGAAGGAAAATGTATTCTTGATTGGAACAATGTATATACAAAAAGGATTT 1342
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79015657830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5