BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486087
Length=1294
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56460.1 | Symbols: | GroES-like zinc-binding alcohol dehyd... 2069 0.0
AT3G56450.1 | Symbols: ALPHA-SNAP1 | alpha-soluble NSF attachme... 104 2e-21
AT3G56440.1 | Symbols: ATATG18D, ATG18D | homolog of yeast auto... 80.5 4e-14
> AT3G56460.1 | Symbols: | GroES-like zinc-binding alcohol dehydrogenase
family protein | chr3:20932791-20934540 REVERSE LENGTH=1400
Length=1400
Score = 2069 bits (1120), Expect = 0.0
Identities = 1239/1297 (96%), Gaps = 6/1297 (0%)
Strand=Plus/Plus
Query 1 GAGAGAGTTATCAGAGATAGCAAAAATGGAGGCTTTGGTTTGCCGGAAATTGGGAGATCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 91 GAGAGAGTTATCAGAGATAGCAAAAATGGAGGCTTTGGTTTGCCGGAAATTGGGAGATCC 150
Query 61 GACGGCGACGAAGCCAGGTAATCCAGATTCGCCGGTGGAAGTAAGCAAGATTCATCCGAT 120
|| |||||||| ||||||| |||||| || ||||| ||||||||||||| |||||||||
Sbjct 151 AACTGCGACGAATCCAGGTAGTCCAGAATCTCCGGTAGAAGTAAGCAAGACTCATCCGAT 210
Query 121 CCCGTCTTTGAATTCAGACACGGCGGTGAGAGTTAGAGTTATCGCTACGAGCTTGAATTA 180
|||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||
Sbjct 211 CCCGTCTTTGAATTCAGACACGTCGGTGAGAGTCAGAGTTATTGCTACGAGCTTGAATTA 270
Query 181 CGCCAATTACCTTCAGATTCTCGGGAAATACCAGGAGAAACCTCCGTTACCATTCATCCC 240
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 271 CGCAAATTACCTTCAGATTCTCGGGAAATACCAGGAGAAACCTCCGTTACCTTTCATTCC 330
Query 241 TGGCTCCGATTACTCTGGAATCGTCGACGCTATTGGTCCCGCCGTCACCAAATTTCGCGT 300
||||| |||||||| |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 331 GGGCTCTGATTACTCCGGAATCGTCGACGCGATTGGTCCCGCCGTCACCAAATTCCGCGT 390
Query 301 CGGTGATCGTGTCTGTTCTTTCGCCGATCTCGGTTCCTTCGCTCAGTTTATCGTCGCCGA 360
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 391 TGGAGATCGTGTCTGTTCTTTCGCCGATCTCGGTTCCTTCGCTCAGTTTATCGTCGCTGA 450
Query 361 TCAGTCTCGTCTGTTCCTTGTACCGGAAAGATGTGACATGGTTGCTGCAGCTGCGCTTCC 420
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 TCAATCTCGTTTGTTCCTTGTACCGGAAAGATGTGACATGGTTGCTGCAGCTGCGCTTCC 510
Query 421 TGTTGCGTTTGGGACTTCTCATGTAGCACTTGTTCATAGAGCTCGTTTAACATCTGGTCA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 TGTTGCGTTTGGGACTTCTCATGTAGCACTTGTTCATAGAGCTCGTTTAACATCTGGTCA 570
Query 481 AGTCTTATTGGTTCTAGGTGCTGCTGGTGGTGTTGGTCTTGCAGCTGTTCAAATCGGCAA 540
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 571 GGTCTTATTGGTTCTAGGTGCTGCTGGTGGCGTTGGCCTTGCAGCTGTTCAAATCGGTAA 630
Query 541 GGTTTGTGGAGCCATTGTCATTGCAGTTGCTAGAGGAACTGAGAAGATTCAGCTGTTGAA 600
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 631 GGTTTGTGGAGCCATTGTCATTGCAGTTGCTAGAGGAACTGAGAAGATTCAACTGTTGAA 690
Query 601 GTCAATGGGAGTGGATCATGTTGTTGATCTAGGCACTGAGAATGTTATTTCAAGTGTCAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 691 GTCAATGGGAGTGGATCATGTTGTTGATCTAGGCACTGAGAATGTTATTTCAAGTGTGAA 750
Query 661 AGAGTTTATCAAGACAAGAAAGCTTAGAGGAGTTGATGTTTTGTATGATCCTGTGGGAGG 720
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||
Sbjct 751 AGAGTTTATCAAGACAAGAAAGCTTAAAGGAGTTGATGTTCTGTATGATCCTGTTGGAGG 810
Query 721 GAAACTAACCAAGGAGTCCATGAAAGTTCTGAAATGGGGAGCTCAGATTCTGGTGATAGG 780
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 811 GAAACTAACCAAGGAGTCCATGAAAGTTCTGAAATGGGGAGCCCAGATTCTGGTGATAGG 870
Query 781 TTTCGCCAGCGGCGAAATACCTGTGATTCCTGCTAATATAGCACTTGTTAAGAACTGGAC 840
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 871 TTTCGCCAGCGGCGAAATACCTGTCATTCCTGCTAATATAGCACTTGTTAAGAACTGGAC 930
Query 841 GGTTCATGGTCTTTACTGGGGTAGCTACAGGATCCATCAGCCCAATGTCCTTGAAGATTC 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 931 GGTTCATGGTCTTTACTGGGGTAGCTACAGGATCCATCAGCCCAATGTCCTTGAAGATTC 990
Query 901 CATCAAAGAGTTACTGTTATGGCTTTCCCGAGGATTGATCACTATTCACATCTCTCATAC 960
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 CATCAAAGAGTTATTGTCATGGCTTTCCCGAGGATTGATCACTATTCACATCTCTCATAC 1050
Query 961 CTATAGCCTCTCCCAGGCCAATCTTGCATTCGGGGATCTCAAAGACAGGAAGGCAATTGG 1020
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1051 CTATAGCCTCTCCCAGGCCAATCTTGCATTCGGGGACCTCAAAGACAGGAAGGCAATTGG 1110
Query 1021 AAAAGTGATGATTGCTCTCGACCACAAGACTGCCGTGTCGTCAAAACTTTAGACTCTCTG 1080
|||||||||||||||||||||||||||||||||| |||| |||||||| |||||||| |
Sbjct 1111 AAAAGTGATGATTGCTCTCGACCACAAGACTGCCCTGTCTTCAAAACTATAGACTCTTTA 1170
Query 1081 TGGCCATAGGAGAAAACTGCTTCTGTATTCTAGAAATAAGGTTATTGAAATGGCCATGTA 1140
||||| ||||||||||| |||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1171 TGGCCGTAGGAGAAAACAGCTTATGTATTCTAGAAATAAGGTTATTGCAATGGCCATGTA 1230
Query 1141 AGCTGAACCATCTTGCATTTATAT-TCGGCCTATAATCCACATTCTGATTTGAAATTT-A 1198
|||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||| |
Sbjct 1231 AGCTGAACCATCTTGCATTTATATCT-GGCATATAATCCACATTCTGATTTGAAATTTCA 1289
Query 1199 ATAATA-GTAATCGAATTGCAGTTTGATTCTCTCTAAAAAATTAGTGTAGATATAAATCC 1257
|||| | || ||||||||||||||||||| |||||| ||| ||||||||| |||||||||
Sbjct 1290 ATAA-ACGTTATCGAATTGCAGTTTGATTTTCTCTAGAAA-TTAGTGTAGTTATAAATCC 1347
Query 1258 TTTTTGTATATACATTGTTCCAATCAAGAATACATTT 1294
|||||||||||||||||||||||||||||||||||||
Sbjct 1348 TTTTTGTATATACATTGTTCCAATCAAGAATACATTT 1384
> AT3G56450.1 | Symbols: ALPHA-SNAP1 | alpha-soluble NSF attachment
protein 1 | chr3:20930557-20932869 FORWARD LENGTH=1146
Length=1146
Score = 104 bits (56), Expect = 2e-21
Identities = 58/59 (98%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 1236 AAATTAGTGTAGATATAAATCCTTTTTGTATATACATTGTTCCAATCAAGAATACATTT 1294
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 AAATTAGTGTAGTTATAAATCCTTTTTGTATATACATTGTTCCAATCAAGAATACATTT 1084
> AT3G56440.1 | Symbols: ATATG18D, ATG18D | homolog of yeast autophagy
18 (ATG18) D | chr3:20926001-20928988 FORWARD LENGTH=1656
Length=1656
Score = 80.5 bits (43), Expect = 4e-14
Identities = 43/43 (100%), Gaps = 0/43 (0%)
Strand=Plus/Minus
Query 1252 AAATCCTTTTTGTATATACATTGTTCCAATCAAGAATACATTT 1294
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 AAATCCTTTTTGTATATACATTGTTCCAATCAAGAATACATTT 1576
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63654291060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5