BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486089
Length=1080
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56470.1 | Symbols: | F-box family protein | chr3:20934815-... 1585 0.0
> AT3G56470.1 | Symbols: | F-box family protein | chr3:20934815-20936436
FORWARD LENGTH=1415
Length=1415
Score = 1585 bits (858), Expect = 0.0
Identities = 1008/1082 (93%), Gaps = 4/1082 (0%)
Strand=Plus/Plus
Query 1 AAGAAGAAGACGAAAAATAAGAAGCAGAGTAGGAATGAAAAAGAAAAGGACCAAACTTTC 60
|||||||||||||||| ||||| |||||||| || |||||||||||| | |||||||||
Sbjct 28 AAGAAGAAGACGAAAAGGAAGAAACAGAGTAGCAAGGAAAAAGAAAAGTATCAAACTTTC 87
Query 61 ATAAATCTTCCCTCTGATCTCTTAAAACTGGTGATTTCCCGTCTTTCATTGAAAGACAAC 120
||||| ||||| | |||||||||| ||||||| ||||| ||||| | |||||||| |||
Sbjct 88 ATAAACCTTCCTTGTGATCTCTTACAACTGGTAATTTCTCGTCTCCCGTTGAAAGATAAC 147
Query 121 ATCCGTGCTTCTGCTGTCTGCAAAACATGGCACGAAGCTTGTGTTTCTCTTCGAGTGATA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 148 ATCCGTGCTTCTGCTGTCTGCAAAACATGGCACGAAGCTTGTGTTTCTCTTCGAGTGATA 207
Query 181 CACACATCTCCTTGGCTTATCTACTTTTCCAAAACAGACGAATCCTATGAACTTTATGAC 240
|| ||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||
Sbjct 208 CATACATCTCCTTGGCTTATTTACTTCTCCAAAACAGACGATTCCTATGAACTTTATGAC 267
Query 241 CCATCAATGCAG-AAAACATACAATCTTCACTTCCCTGAGTTATCCGGTTTTCGAGTTTG 299
|||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 268 CCATCAATGCAGAAAAAC-TGCAATCTTCACTTCCCTGAGTTATCCGGTTTTCGAGTTTG 326
Query 300 TTACTCCAAAGATGGTTGGTTACTCATGTACAATGCCAATTCCTATAAACTCCTTTTCTT 359
|||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||
Sbjct 327 TTACTCCAAAGATGGTTGGTTACTCATGTACAATCCCAATTCTTATCAACTCCTTTTCTT 386
Query 360 CAATCCGTTTACCCGTGATCACATACCCGTACCTCCGCTTTGGATGGCATATGATCAAAG 419
|||||| ||||| |||||| | ||||| | ||| |||||||||||||||||||||||||
Sbjct 387 CAATCCCTTTACTCGTGATTGCGTACCCATGCCTACGCTTTGGATGGCATATGATCAAAG 446
Query 420 AATGGCTTTCTCTTGTGCTCCTACATCAACTAGTTGTCTCTTGTTCACTATCAGTTCTGT 479
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 447 AATGGCTTTCTCTTGTGCTCCTACATCAACTAGTTGTCTCTTGTTCACTGTCACTTCTGT 506
Query 480 CACTTGGAATTACATCACCATCAAGACATGTTGTGCTGATGCTCAAGAGTGGAAAACATT 539
||||||||||||||||||||||||||||| || |||| ||||| |||||||||||||||
Sbjct 507 CACTTGGAATTACATCACCATCAAGACATATTTTGCTAATGCTAAAGAGTGGAAAACATC 566
Query 540 TGAGTTCAAGAATCGGTTACCGCGAAACTTCAACACTTTCGAGCAGATTGTCTTCTCAAA 599
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 567 TGTGTTCAAGAATCGGTTACAGCGAAACTTCAACACTTTCGAGCAGATTGTCTTCTCCAA 626
Query 600 TGGTGTCTTCTACTGCCTCACAAACACCGGATGCTTAGCGCTCTTTGACCCATCTTTGAA 659
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 627 TGGTGTCTTCTACTGCCTCACAAACACCGGATGCTTAGCTCTCTTTGACCCATCTTTGAA 686
Query 660 TTCTTGGAATGTTCTTCCCGGGCGACCTCCTAAACGTCCTGGAAGCAACGGATGCTTCAT 719
|| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||
Sbjct 687 TTATTGGAATGTTCTTCCTGGGAGACCTCCTAAACGTCCTGGAAGCAACGGATGCTTTAT 746
Query 720 GACAGAACACCAAGGAGAGATCTTTCTTATTTATATGTACAGACACATGAACCCAACAGT 779
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 747 GACAGAACACCAAGGAGAGATCTTTCTCATTTATATGTACAGACACATGAACCCAACAGT 806
Query 780 GCTTAAACTTGATCTTACAAGCTTTGACTGGACTGAGAGGAAAACACTAGGAGGCTTGAC 839
|||||||||||| ||||| |||||||| ||| |||||||||||||||| |||||||||||
Sbjct 807 GCTTAAACTTGACCTTACTAGCTTTGAATGGGCTGAGAGGAAAACACTGGGAGGCTTGAC 866
Query 840 GATCTACGCTAGCGCTTTGTCTTCTGAATCGAGAGCCGAGCAGCAGAAGCCGAGTGGAAT 899
||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 867 GATCTACGCAAGCGCTTTGTCTTCTGAATCCAGAGCCGAGCAGCAGAAGCAGAGTGGAAT 926
Query 900 AAGTAACTGTTTGTGTCTTTCTGTGTTCCATGGATTCAAGAGGACTTGCATATATTATGA 959
| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 927 ATGGAACTGTTTGTGTCTCTCTGTGTTCCATGGATTCAAGAGGACTTGCATATATTATAA 986
Query 960 GGTTGATGAAGAGAGTGAGATCTGCTTCAAGTGGAGAAAACAGAATCCCT-ATGAGAATA 1018
||||||||||||||||||| | ||||||||||||| ||||||||| |||| |||||||||
Sbjct 987 GGTTGATGAAGAGAGTGAGGTTTGCTTCAAGTGGAAAAAACAGAA-CCCTTATGAGAATA 1045
Query 1019 TTTGGATCATGCCACCACTCAACCTCCTTGATCTCCCTTTATTTGATCAACTTATCAAGT 1078
| |||||||||||||||||||||||| ||||||||||||| |||||||| | |||| |||
Sbjct 1046 TCTGGATCATGCCACCACTCAACCTCATTGATCTCCCTTTGTTTGATCATCGTATCTAGT 1105
Query 1079 AA 1080
||
Sbjct 1106 AA 1107
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52911374430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5