BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486090
Length=820
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56490.1 | Symbols: HIT3, HINT1 | HIS triad family protein 3... 1127 0.0
> AT3G56490.1 | Symbols: HIT3, HINT1 | HIS triad family protein
3 | chr3:20941502-20943469 FORWARD LENGTH=814
Length=814
Score = 1127 bits (610), Expect = 0.0
Identities = 766/835 (92%), Gaps = 36/835 (4%)
Strand=Plus/Plus
Query 1 GTCGACGGATTTAGGG-TTAATTTTGGT-TTAATGAGCCACCGTGTTTCGATTCTATCAT 58
||| ||| |||||||| |||| ||| || |||||||||||||||||||||||||||||||
Sbjct 1 GTCTACGAATTTAGGGTTTAA-TTT-GTGTTAATGAGCCACCGTGTTTCGATTCTATCAT 58
Query 59 CTCATTTCTCACCT-CTCTCCGCCGTCATGGCTTCCGAGAAAGAAGCTGCTCTCGCCGCC 117
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 CTCATTTCTCACCTGC-CTCCGCCGTCATGGCTTCCGAGAAAGAAGCTGCTCTCGCCGCC 117
Query 118 ACTCCTTCCGATTCTCCCACCATATTTGACAAGATCATCAGCAAAGAAATTCCATCCACC 177
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 118 ACTCCTTCCGATTCTCCCACCATATTTGACAAGATCATCAGCAAAGAGATTCCATCCACC 177
Query 178 ATGGTTTATGAGGATGACAAGGTCTTAGCTTTTAGAGACATAACGCCCCAGGGTCCTGTT 237
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 178 GTGGTTTTTGAGGATGACAAGGTCTTAGCTTTTAGGGACATAACGCCCCAGGGTCCTGTT 237
Query 238 CACATCCTCCTTATTCCAAAAGTGAGGGATGGCCTAACTGGCCTCTCTAAGGCTGAGGAA 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CACATCCTCCTTATTCCAAAAGTGAGGGATGGCCTAACTGGCCTCTCTAAGGCTGAGGAA 297
Query 298 AGGCACATCGACATCTTGGGCCGCCTTCTCTACACTGCTAAGCTCGTAGCGAAACAAGAA 357
|||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 298 AGGCACATCGACATCTTGGGCCGCCTTCTCTACACTGCCAAGCTTGTAGCAAAACAAGAA 357
Query 358 GGCCTAGAAGAGGGTTTCAGAATTGTGATCAATGATGGTCCACAAGGCTGTCAATCGGTG 417
||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 358 GGCCTAGCAGAGGGTTTCAGAATTGTTATCAATGATGGTCCTCAAGGCTGTCAATCGGTG 417
Query 418 TATCACATTCATGTTCATCTCATTGGAGGACGTCAAATGAACTGGCCTCCTGGCTAAAAG 477
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
Sbjct 418 TATCACATTCATGTTCATCTCATTGGAGGACGCCAAATGAACTGGCCTCCTGGTTAAA-G 476
Query 478 ATATCATCTTGAAGTGGATTGTTGTCCTGATAATAAGAGGGACGCTTAGAGTTTGATCCC 537
|| ||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct 477 AT--CATCTTGAAGTGGATTGTTGTCCTGATGATAAGAGGGACGCTTAGAGTTTGCTCTC 534
Query 538 GTCTTCTTCTACTGTCTCTATAAATaaaaaaaaaCTTGGGACATGAGTTTTATGATTGTT 597
|||| || | |||||||||||||||||||| | |||||||||| |||||||||||||
Sbjct 535 GTCTACTA--A-TGTCTCTATAAATAAAAAAA--CGTGGGACATGACTTTTATGATTGTT 589
Query 598 ATGCAAAACCTTGTTTTATGTTATGAAAAGGATATTTGACTGTTTTCTCTTCTGGAATCT 657
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 590 ATGCAAAACCTTATTTTATGTTATGAAAAGGATATTTCACTGTTTTCTCTTCTGGAATCT 649
Query 658 TGTGGTTGGTTGCTTTTTCTCTATTATTAACTCCGTAGAAATTGTCTGCGTGTAAAACTT 717
|||||||| ||||| |||||||||| |||| ||| |||||| |||||| |||| |
Sbjct 650 TGTGGTTG----CTTTT-CTCTATTATTGACTCTGTAAAAATTGACTGCGTTTAAA-C-- 701
Query 718 CA-A-C-C--T-TTT--G-A-GAA-ACCAGAATACCAGAGACGCATGAATTGACCTTGTA 766
|| | | | | ||| | | ||| |||||| | ||||||||||||||||||||||||
Sbjct 702 CAGAGCGCCATCTTTAAGGAAGAATACCAGAG-AGTAGAGACGCATGAATTGACCTTGTA 760
Query 767 AACATCCACTACGTGTTCATGAGCATCTGACATAATATTATATA-AAAGCTTGGT 820
||||||||| |||||||||||||| ||||||||||||||||||| ||| ||||||
Sbjct 761 AACATCCACGACGTGTTCATGAGCTTCTGACATAATATTATATACAAA-CTTGGT 814
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39936146865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5