BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486092
Length=1230
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1607 0.0
AT3G56500.1 | Symbols: | serine-rich protein-related | chr3:20... 73.1 6e-12
> AT3G56510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:20943928-20946660 REVERSE LENGTH=1289
Length=1289
Score = 1607 bits (870), Expect = 0.0
Identities = 1020/1090 (94%), Gaps = 19/1090 (2%)
Strand=Plus/Plus
Query 1 TCTTCTTCTTCTTCCGAACAGAGAGTACCA---GTTCGCCGACGTCACTAGCTTCTTCTT 57
||||||||||||||||||| |||||||| | ||||||||||| |||||||||||| ||
Sbjct 10 TCTTCTTCTTCTTCCGAACGGAGAGTACTAGTTGTTCGCCGACGGCACTAGCTTCTTTTT 69
Query 58 CTTAATTACTTACTCTCGCAGCTGCTGATGAAGATGCAGACTGAGGAATTTCACGACCTT 117
| | || || ||| | | |||||||| ||||||||||| |||||||| |||||| |||
Sbjct 70 C-T--TT-CTCACT-T-TC-GCTGCTGAAGAAGATGCAGAGTGAGGAATCTCACGAGCTT 122
Query 118 ACGAATGGAATCTCCGA-G-G-AGGAGTCgaaggaaacaaagaagagtcaaaaggctgat 174
||| ||||||| ||||| | | ||||||| |||||||| | |||||||||||||||||||
Sbjct 123 ACGGATGGAATATCCGAGGAGAAGGAGTCCAAGGAAACGATGAAGAGTCAAAAGGCTGAT 182
Query 175 agaaagaaaaagaagttgaaagagaaaTTGCTTAAGGAAGCTTCTAAAGCTGACAATAGA 234
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 183 AGAAAGAAAAAGAAGTTGAAAGAGAAATTGCTTAAGGAAGCTTCGAAAGCTGACAATAGA 242
Query 235 GGGGTTTGCTACTTAAGTCGTATCCCACCACACATGGATCACATTAGACTTCGCCATATT 294
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 243 GGTGTTTGCTACTTAAGTCGTATCCCACCACACATGGATCACGTTAGACTTCGCCATATT 302
Query 295 CTCGCTCAATTTGGAGAATTAGGAAGGATTTATCTTGCACCTGAAGATTCTGAAGCACAA 354
|||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 303 CTCGCTCAATATGGAGAACTCGGAAGGATTTATCTTGCACCTGAAGATTCTGAAGCACAA 362
Query 355 GTTCACCGCAAGCGTGCTGGTGGATTTCGTGGGAAAAGGTTTTCTGAAGGGTGGGTGGAG 414
|| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 363 GTGCACCGTAAGCGGGCTGGTGGATTTCGTGGCCAAAGGTTTTCTGAAGGGTGGGTGGAG 422
Query 415 TTTGCTAAGAAAAGCGTAGCTAAACGGGTTGCAGATATGCTAAATGGAGAACAAATCGGG 474
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 TTTGCTAAGAAGAGCGTAGCTAAACGGGTTGCAGATATGCTAAATGGAGAACAAATCGGG 482
Query 475 GGGAAAAAGAAGTCATCAGTATATTATGATATTTGGAACATCAAATACTTGACCAAATTT 534
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 483 GGGAAAAAGAAGTCATCAGTATACTATGATATTTGGAACATCAAATACTTGACCAAATTT 542
Query 535 AAATGGGATGATCTTACTGAAGAAATCGCATACAAAAGCGCAATACGGGAACAGAAATTA 594
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 543 AAATGGGATGATCTTACTGAAGAAATCGCATACAAAAGTGCAATACGGGAACAGAAATTA 602
Query 595 AATATGGTTCTTTCTGCTGCAAAGAGGGAGAAGGACTTTTATCTATCTAAAATAGAGAAG 654
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 603 AATATGGTTCTTTCTGCTGCAAAGAGGGAGAAAGACTTTTATCTATCTAAAATAGAGAAG 662
Query 655 TCACGTGCCATGACCGAGATAGATGCACGAATGGAAAAGAAACGAAAGATTCAGGAAGAA 714
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 663 TCTCGTGCCATGACCGAGATAGATGCACGAATGGAAAAGAAACGAAAGATTCAAGAAGAA 722
Query 715 TCGGGTAGCAATGCTGAAGCAGCACCAGTCTTTCCACCTAGGGTGATTCGCCATTTTAGA 774
||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||
Sbjct 723 TCGGGTAGCAATGCTGAAGCAGCACCAGTCTTTCCACCTAGGGCGATTTTCCAGTTTAGA 782
Query 775 CAGAAGAAATCAATTGAAAATGAGACATCTCAGAGCAAGCCTGGGCTCTCCACTGATTTC 834
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 783 CAGAAGAAATCAATTGAAAATGAGACATCTCAAAGCAAGCCTGGGCTCTCCACTGATTTC 842
Query 835 CTAGCATCGGTATTTGGCGGTTCTTAAAGGTTAAGAGGGCATGTGACACTGCGAATTGAT 894
||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||
Sbjct 843 CTAGCATCGGTATTTGGCGGTTCTTAA-GGTTAAGAGG-CATGTGACGTTGCGAATTGAT 900
Query 895 CATAGCTTGATGGAGAAATCAATGATCAACTCCATTATATATGAATGTCAATTAGTTTCT 954
||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||
Sbjct 901 CATAGCTTGATGGAGAAATCAATGAGCAATTCCATTATGTATGAATGTCAATTAGTTTCT 960
Query 955 GCATGTCAACAGAGAAAATATTCACATACACTTAGCATTTTGTATACTTTTGTGTTCTCC 1014
||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 961 GCAACTCAACAGAGAAAATATTCACATACACTTAGCAATTTGTATACTTTTGTGTTCTCC 1020
Query 1015 TTATAAGGTTTCCTATATACACTATTGTCAAGAAACATGT--GTGACCTTTCCACCACCA 1072
|||||||||| |||||||| |||||||||||||||| | |||| ||||||||||||
Sbjct 1021 TTATAAGGTTAGCTATATAC--TATTGTCAAGAAACATATATGTGAAATTTCCACCACCA 1078
Query 1073 Caaaaaaaaa 1082
|||||||||
Sbjct 1079 AAAAAAAAAA 1088
Score = 167 bits (90), Expect = 3e-40
Identities = 109/118 (92%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 1115 GGAAAAAACAATCTTCAATACAATCAGGACCGTACAATATTGGTTTTGTGAATAACG-AA 1173
|||||||||||||||| | ||||||||||| | || ||| ||||||||||||||||| ||
Sbjct 1171 GGAAAAAACAATCTTCTAGACAATCAGGACGGCACCATACTGGTTTTGTGAATAACGAAA 1230
Query 1174 -AGAGACTATGTGACATTATTGGTCATCGAGACGACGAGAAGAAAGCAAGGGCTTTGG 1230
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1231 GAGAGACTATGTGACATTATTGGTCACCGAGACGACGAGAAGAAAGCAAGGGCTTTGG 1288
> AT3G56500.1 | Symbols: | serine-rich protein-related | chr3:20943638-20943970
FORWARD LENGTH=333
Length=333
Score = 73.1 bits (39), Expect = 6e-12
Identities = 41/42 (98%), Gaps = 0/42 (0%)
Strand=Plus/Minus
Query 1189 TTATTGGTCATCGAGACGACGAGAAGAAAGCAAGGGCTTTGG 1230
|||||||||| |||||||||||||||||||||||||||||||
Sbjct 333 TTATTGGTCACCGAGACGACGAGAAGAAAGCAAGGGCTTTGG 292
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60441456180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5