BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486095
Length=906
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56530.1 | Symbols: anac064, NAC064 | NAC domain containing ... 773 0.0
AT4G13611.1 | Symbols: | Pseudogene of AT3G56530; ANAC064 (Ara... 209 3e-53
AT5G39690.1 | Symbols: ANAC093, NAC093 | NAC domain containing ... 193 3e-48
> AT3G56530.1 | Symbols: anac064, NAC064 | NAC domain containing
protein 64 | chr3:20948911-20950045 REVERSE LENGTH=960
Length=960
Score = 773 bits (418), Expect = 0.0
Identities = 521/571 (91%), Gaps = 6/571 (1%)
Strand=Plus/Plus
Query 71 CTTCTTCTGCCGCTGATAACTTCTTTTCTCCGTCGACGAACCCGTTCGTTTTCCCGCCAG 130
||||||||||||||||||| ||||||||| ||||||||| | ||| | |||||||||||
Sbjct 104 CTTCTTCTGCCGCTGATAATTTCTTTTCTTGGTCGACGAAACAGTTTGCTTTCCCGCCAG 163
Query 131 GTTATAGATTTGTACCAAATGACGAAGAACTCATCTTGCATTACTTGAAACCCTTCTCGC 190
||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||| ||||
Sbjct 164 GTTATAGATTTGTACCAAAGGACCAAGAACTCATCTTTCATTACTTGAAACCCTTTTCGC 223
Query 191 AAGGCAACAAATGCTCATTTCTCAATGTTCCTATCAATCACGTGAACATCTACGAGTCAA 250
||||||| ||||||||||| ||||||||||||||| ||| |||||||||||||||||||
Sbjct 224 AAGGCAATAAATGCTCATTGCTCAATGTTCCTATCCATCGTGTGAACATCTACGAGTCAA 283
Query 251 ATCCACAACAGCTTTCAGAGAAATATGAGAAGGGTAATGATAAAGAATGGTTCTTTATAT 310
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 284 ATCCACAACATCTTTCAGAGAAATATGAGAAGGGTAATGATAAAGATTGGTTCTATATAT 343
Query 311 CGGAGAGGACCAAGATCGGTGAAG-CTGGAAGAAATAAGAAACGTGTCGCCAATGGAGGA 369
||||||||||||||| |||| ||| ||||||||| ||| |||||||||| ||||||||||
Sbjct 344 CGGAGAGGACCAAGACCGGT-AAGGCTGGAAGAAGTAATAAACGTGTCGACAATGGAGGA 402
Query 370 TATTGGAACGCAACTGTAGCTACC-AAGAGGATTGACGCTGGAAATGGCATAGTCGGCTA 428
||||||| ||||||||||||| || || || || |||||||||||||||||||||||||
Sbjct 403 TATTGGAGCGCAACTGTAGCTGCCCAAAAG-ATCAACGCTGGAAATGGCATAGTCGGCTA 461
Query 429 CAAAATCT-CACTAGAATACTACGTTGGGAAACAACCCAATGGTGTAAAAGGGGATTGGT 487
||| | || ||||||| ||||| |||||||||||| | ||| |||| |||||||||||||
Sbjct 462 CAAGA-CTTCACTAGAGTACTATGTTGGGAAACAATCAAATAGTGTCAAAGGGGATTGGT 520
Query 488 TAATGCATGAATACTGGTTTGAGTCTTCAGATGATAACAACAACGAGAAGGTAGATCATG 547
||||||| || ||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 521 TAATGCAAGAGTACTGGTTTGAGTCTTCTGATGATAACAACAACGAGAAGGTGGATCATG 580
Query 548 TTTTGTGCAAGATTTATCTGACTCCAACGGCAGCAaagaagaagaaagcagaggaagaag 607
||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||
Sbjct 581 CTTTGTGCAAGATTTATCTGACTCCAGCGGCAGCAAAGAAGAAGAAAGCTGAGGAAGCAG 640
Query 608 agaatgagaagctgaagaaagaagaagtcgt 638
||||||||||||||||||||||||||| |||
Sbjct 641 AGAATGAGAAGCTGAAGAAAGAAGAAGACGT 671
Score = 91.6 bits (49), Expect = 1e-17
Identities = 49/49 (100%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 1 ATGGCGATTCCACAAAGAAACAAGCGCAAAGCAAGATCCTCGCCGGAAC 49
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGATTCCACAAAGAAACAAGCGCAAAGCAAGATCCTCGCCGGAAC 49
> AT4G13611.1 | Symbols: | Pseudogene of AT3G56530; ANAC064 (Arabidopsis
NAC domain containing protein 64); transcription
factor | chr4:7922356-7922657 FORWARD LENGTH=302
Length=302
Score = 209 bits (113), Expect = 3e-53
Identities = 230/281 (82%), Gaps = 30/281 (11%)
Strand=Plus/Plus
Query 541 GATCATGTTTTGTGCAAGATTTATCTGACTCCAACGGCAGCAaagaagaagaaagcagag 600
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 4 GATCATGTTTTGTGCAAGATTTATCTGACTCCATCGGCAGCAAAGAAGAAGAAAAT-GAG 62
Query 601 gaagaagagaatgagaagctgaagaaagaagaagtcgtattcaaagaagagGTTAAGCAG 660
|| | || | || | | ||| || | | |||||| ||| | |||| | ||||
Sbjct 63 GA-GCTGA-A--GA-A-GATGATCAA-GT-G--GTCGTA---AAA-A-GAGG--A-GCAG 104
Query 661 CTGGATTTGCATCAATCGGACCAATCGCATCCTCATGATATTGTGTATCAGCCGCAGTCT 720
|||||||||||| ||||| | | || | |||||||||||||||||||||||| |||
Sbjct 105 CTGGATTTGCATTAATCG--C-A---GC--C-TCATGATATTGTGTATCAGCCGCA-TCT 154
Query 721 TTT-CCTTATGACTTGGATCATTTTTCTGAGTTGATCAGCTTTGAACAGCAACCAGTGAT 779
||| |||||| |||||||| | ||||| |||||||||| |||||||| |||||||||||
Sbjct 155 TTTTCCTTATAACTTGGATAACATTTCTAAGTTGATCAGTTTTGAACAACAACCAGTGAT 214
Query 780 CCCAGAAGATTTTGAAGATTTCTTGGCTGATTTCATTAAGC 820
|||||| |||||||||||||| |||||||| ||||| ||||
Sbjct 215 CCCAGAGGATTTTGAAGATTTTTTGGCTGACTTCATGAAGC 255
> AT5G39690.1 | Symbols: ANAC093, NAC093 | NAC domain containing
protein 93 | chr5:15888171-15890187 FORWARD LENGTH=885
Length=885
Score = 193 bits (104), Expect = 3e-48
Identities = 151/172 (88%), Gaps = 9/172 (5%)
Strand=Plus/Plus
Query 742 TTTTCTGAGTTGATCAGCTTTGAACAGCAACCA--G-TGATCCCAGAAGATTTTGAAGAT 798
||||||||||||| ||||||| ||||||||||| | |||||||||| ||||| ||||||
Sbjct 709 TTTTCTGAGTTGAACAGCTTTCAACAGCAACCAGTGATGATCCCAGACGATTTAGAAGAT 768
Query 799 TTCTTGGCTGATTTCATTAAGCCACATTCACTAGATGGAGATGAAGAATCCAACAATTAT 858
||||||||||| || || ||||||||||||| |||||||||||||||||||||||||||
Sbjct 769 TTCTTGGCTGAATTAATGGAGCCACATTCACTGGATGGAGATGAAGAATCCAACAATTAT 828
Query 859 GG-TTTATTTGAAGGCTTCTTCGACACACAAGGAAT----GATAAAACATTA 905
|| ||| ||||||||||| || |||||| ||||||| ||||||||||||
Sbjct 829 GGGTTT-TTTGAAGGCTTATTTGACACAGAAGGAATTAATGATAAAACATTA 879
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44256283507
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5