BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486098
Length=1557
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56570.1 | Symbols: | SET domain-containing protein | chr3:... 1297 0.0
> AT3G56570.1 | Symbols: | SET domain-containing protein | chr3:20958660-20961137
FORWARD LENGTH=1596
Length=1596
Score = 1297 bits (702), Expect = 0.0
Identities = 764/795 (96%), Gaps = 0/795 (0%)
Strand=Plus/Plus
Query 1 ATGGCCACAAGGAGGTTAAGAGCATTCAAGAGATGGATGAAAGCTAACGGAGTTGATTGC 60
|||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 1 ATGGCCACAAGGAGATTAAGAGCATTCAAGAGATGGATGCAAGCTAACGGCGTTGATTGC 60
Query 61 AGCGACGCTCTCAACCTCGTCGACGACCAAAACGATGGTGTCTCTGTGAGAGCATTCTGC 120
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 AGCGAAGCTCTCAACCTCGTCGACGACGAAAACGATGGTGTCTCTGTGAGAGCATTCTGC 120
Query 121 GATTTGAAGGAAGGAGATGTTGTTGCCAATATCTCAAAAACTGCTTGTCTCACTATCAAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GATTTGAAGGAAGGAGATGTTGTTGCCAATATCTCAAAAACTGCTTGTCTCACTATCAAA 180
Query 181 ACCAGTGGAGCTCGTGAGATGATCGAATCTGCTGATTTAGATGGAAGTTTAGGTCTCTCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACCAGTGGAGCTCGTGAGATGATCGAATCTGCTGATTTAGATGGAAGTTTAGGTCTCTCT 240
Query 241 GTGGCTCTCATGTACGAGAGAAGCTTAGGTGAAGAATCTCCTTGGGCTGGTTACCTTCAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 GTGGCTCTCATGTACGAGAGAAGCTTAGGTGAAGAATCTCCTTGGGCTGGTTATCTTCAG 300
Query 301 ATTCTTCCTGTTCAAGAAGATTTGCCTCTTGTTTGGTCTCTTCAAGACTTGGATTCTCTC 360
||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 301 ATTCTTCCTATTCAAGAAGATTTGCCTCTTGTTTGGTCTCTTGAAGACTTAGATTCTCTC 360
Query 361 TTATCTGGAACTGAGCTTCATAAGGTGGTGAAGGAAGATCATGTTCTTATATATGAAGAT 420
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 361 TTATCTGGAACTGAGCTTCATAAGTTGGTGAAGGAAGATCATGTTCTTATATATGAGGAT 420
Query 421 TGGAAAGAAAACATATTGCCACTTACCTCTTCACTGCCTCAGAATGTTGATTCTGATTCG 480
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGGAAAGAAAACATTTTGCCGCTTACCTCTTCACTGCCTCAGAATGTTGATTCTGATTCG 480
Query 481 TTTGGAATTAAAGAGTATCTTGCTGCGAAGAGTTTAATTGCTTCACGGTCTTTCCAGATC 540
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||| | |||
Sbjct 481 TTTGGAATCAAAGAGTATCTTGCTGCTAAGAGTTTAATTGCTTCACGGTCTTTCGAAATC 540
Query 541 GATGACTATCATGGATCAGGGATGGTTCCTCTTGCAGATCTCTTCAATCATAAAACTGGG 600
||||| || |||||||| |||||||||||||||||||| ||||| |||||||||||||||
Sbjct 541 GATGATTACCATGGATCCGGGATGGTTCCTCTTGCAGACCTCTTTAATCATAAAACTGGG 600
Query 601 GCAGAAGACGTTCATTTCACTCATGAATCCGATACTGAAGCTGATGAATCTGAAAACGAT 660
|||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 601 GCAGAAGACGTTCACTTCACTCATGAATCCGATTCTGAAGCTGATGAATCTGACAACGAT 660
Query 661 GATGCTGCAAATGAGGCCACCGATGAAGACGACCCTTCCAGTAAAATTTCTTCCTCGCCT 720
||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 661 GATGCTGCAAATGAGACCACTGATGAAGACGAGCCTTCCAGTAAAATTTCTTCCTCGCCT 720
Query 721 GAGCAGTCTTTTGAGGACGTTCCTGGTGAAAACACTGATGACGAAGCCAaagaagaagaa 780
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GAGCAGTCTTTTGAGGAAGTTCCTGGTGAAAACACTGATGACGAAGCCAAAGAAGAAGAA 780
Query 781 gaagaagaCGACGAA 795
|||||||| || |||
Sbjct 781 GAAGAAGAAGAAGAA 795
Score = 1240 bits (671), Expect = 0.0
Identities = 750/788 (95%), Gaps = 6/788 (1%)
Strand=Plus/Plus
Query 770 aagaagaagaagaagaagaCGACGAAAACTCTTCAATGCTGCAAAATGATCAATCCGGTC 829
||||||||| |||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct 815 AAGAAGAAGGAGAAGAGGAAGAAGAAAACTCTTCAATGCTGCAAAATGATCAATCCGGTC 874
Query 830 TAAAAATGATTATGGTGAAGGATGTCTCAGCTGGAACTGAGGTATTCAATACATACGGTT 889
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 875 TAAAAATGATTATGGTGAAGGATGTCTCAGCTGGAGCTGAGGTATTCAATACATACGGTT 934
Query 890 TGATGGGTAATGCTGCGTTACTCCACAGGTACGGATTTACAGAGTTCGATAATCTATACG 949
|||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||| |
Sbjct 935 TGATGGGTAATGCTGCATTACTCCACAGGTACGGATTTACAGAGCTCGATAATCCATATG 994
Query 950 ACATAGTAAACATAGATCTAGAATTAGTAACCGAATGGAGCACATCCTCATTCACAAGCC 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 995 ACATAGTAAACATAGATCTAGAATTAGTAACCGAATGGAGCACATCCTCATTCACAAGCC 1054
Query 1010 GGTACACTCGAGCTAGACTGGCCTTGTGGAGAAAACTAGGCTACACAGGATGCGAGAGTC 1069
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1055 GGTACACTCGAGCTAGACTGGCCTTGTGGAGAAAACTAGGTTACACAGGATGCGAGAGTC 1114
Query 1070 AAAACTCAGAATACTTCGAGGTATCTTCAACCGGAGAACCCCAAACCGAGCTCCTGATCC 1129
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1115 AAAACTCAGAATACTTTGAGGTATCTTCAACCGGAGAACCCCAAACCGAGCTCCTGATCC 1174
Query 1130 TACTCTATATACTGCTCTTACCAGATGACACATACAATAAACTGGATCTAGCTGAATCAA 1189
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1175 TACTCTATATACTGCTCTTACCAGACGACACATACAATAAACTGGATCTAGCTGAATCAA 1234
Query 1190 CAACAGGAGCGTCTCTCTCCAAAGAAGGAAGAGAAACTTCTTCTTCTTCTTACGAGATAA 1249
|||||||||| |||| ||| |||||||| | | ||| |||||||||||||||||||
Sbjct 1235 CAACAGGAGCTTCTCCCTCGAAAGAAGG-A-A-AAA---GATCTTCTTCTTACGAGATAA 1288
Query 1250 CAATTGGGAAACACAAGTTTGTGTTTGGACAAAGCGGAAACGATATTCTTCTGACAGATG 1309
|||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||
Sbjct 1289 CAATTGGGAAACACAAGTTTGTGTATGGAGAAAGCGGAAATGATATTCTTCTGACAGATG 1348
Query 1310 GTGTTTGTGAAGCTCTTCTAACTATTGTGGATAAACGAGAGAGCTTATATGGATCATTAA 1369
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct 1349 GTGTTTGTGAAGCTCTTCTAACTATTGTGGATAAGCGAGAGAGTTTATATGGATCATTGA 1408
Query 1370 ACTCATTGGAAGATGACATTGTTAGGCTCAAGACTTGTTGTCTTCCGAGAGACAGGAGAC 1429
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1409 GCTCATTGGAAGATGACATTGTTAGGGTGAAGACTTGTTGTCTTCCGAGAGACAGGAGAC 1468
Query 1430 TATATCATTCGCTTGTGTTGCGTGTGAGTGAGAGGAAGATTCTAAAGAAGCTTAGGAGCT 1489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1469 TATATCATTCGCTTGTGTTGCGTGTGAGTGAGAGGAAGATTCTAAAGAAGCTTAGGAGCT 1528
Query 1490 ACATCCATACAAAGGCCAATGAGTTTTCCGGCGGAAAGCGCCGGAAGAAGATGCTTCCAA 1549
|||||||||| || ||||||||| |||| ||||||||||||||||||||||| ||||||
Sbjct 1529 ACATCCATACCCAGACCAATGAGTCTTCCAGCGGAAAGCGCCGGAAGAAGATGGTTCCAA 1588
Query 1550 AATCCTAG 1557
||||||||
Sbjct 1589 AATCCTAG 1596
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76857034395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5