BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg486103

Length=407
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G56610.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   388    2e-107


> AT3G56610.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: embryo, 
sperm cell, sepal, pedicel, synergid; EXPRESSED DURING: 4 anthesis, 
C globular stage; CONTAINS InterPro DOMAIN/s: Protein 
of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); 
Has 5 Blast hits to 5 proteins in 2 species: Archae 
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; 
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:20971586-20972084 
REVERSE LENGTH=499
Length=499

 Score =  388 bits (210),  Expect = 2e-107
 Identities = 329/383 (86%), Gaps = 21/383 (5%)
 Strand=Plus/Plus

Query  1    ATACATCATGTCCCTCAAAGCAACTACCGTCACCAAATCCATGTTTGTAGCCTTATTCAC  60
            |||||||||| |||||||||||||||  ||||||||||||||||||| ||||||||||||
Sbjct  6    ATACATCATGGCCCTCAAAGCAACTATGGTCACCAAATCCATGTTTGCAGCCTTATTCAC  65

Query  61   AATTATCGCCATGGCTGCATTGGCATCTGCAGCGACCAGTTTGGTTCAGTCTCCAGAATC  120
            ||||||||| |||||| ||||||||||||||||  || |||||| |||||||||||||||
Sbjct  66   AATTATCGCGATGGCTACATTGGCATCTGCAGCCTCCGGTTTGGCTCAGTCTCCAGAATC  125

Query  121  AGACCACTTGGTTAACAAATGTATGGCTAAGTTATCTTCAAGGTGTGCGATGTATGTCAC  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  126  AGACCACTTGGTTAACAAATGTATGGCTAAGTTATCTTCAAGGTGTGCGATGTATGTCAC  185

Query  181  TGCCG-AAGTACTGTA-TAGCCATGGTCCGTTGAAAC-AA--CA-C--GGATGTTGTCTA  232
             |  | || | ||||| ||  ||||||||| ||| || ||  || |  ||||||||||||
Sbjct  186  GGATGCAA-T-CTGTACTATTCATGGTCCGATGAGACTAAAACATCATGGATGTTGTCTA  243

Query  233  GAAGTTTATCACATGGGACGTGTTTGTCTTAACATCGTGACCAAACATGTAATCCAGACG  292
            ||||||| |||||||||||||| ||||||||| ||||| || || ||||||||||| | |
Sbjct  244  GAAGTTTTTCACATGGGACGTGCTTGTCTTAAAATCGTAACGAATCATGTAATCCAAATG  303

Query  293  TTTTTGCCCAAGCTT---------CGAAAACAAGACTCTCTAGAGAAAAGCACACAAATA  343
            |||||||||||| ||         ||||||||| ||||||| |||||||| ||| | |||
Sbjct  304  TTTTTGCCCAAGTTTGAAGGTGTTCGAAAACAATACTCTCTCGAGAAAAGTACATATATA  363

Query  344  -TGGTATCTTTGTGTTCCGGTTT  365
             ||  | ||||||||||||||||
Sbjct  364  ATGCAA-CTTTGTGTTCCGGTTT  385



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19252547867


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5