BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486104
Length=1435
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56620.1 | Symbols: | nodulin MtN21 /EamA-like transporter ... 2148 0.0
> AT3G56620.1 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr3:20972503-20974611 REVERSE LENGTH=1443
Length=1443
Score = 2148 bits (1163), Expect = 0.0
Identities = 1358/1450 (94%), Gaps = 22/1450 (2%)
Strand=Plus/Plus
Query 1 GTTCGTAGGAAGAGCACAAGCCTCCAGAAGTGCGTGTT-CCTTCTCTGTTCCTAATTCCT 59
|||||||||||||||||||||||||| ||||| ||||| || |||||||||||| ||||
Sbjct 1 GTTCGTAGGAAGAGCACAAGCCTCCACAAGTG-GTGTTGCC-CCTCTGTTCCTAACTCCT 58
Query 60 TCCTCTTATATAAAATTTTGTATCCTCCATACATATACAACAAGGAGAGAAACTTTTGAC 119
| ||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||
Sbjct 59 TTCTCTTATATAAAATTGTGTATCCTCCATAC--ATACAACAAAGAGAGAAACTTTTGAT 116
Query 120 ATGGGGTTAAAGATGTCAGATTCAGCCAAACCCTACTTTGCAATGATTTGTCTTCAATTC 179
|||||||||||||||||||| |||||||| || |||||||||||| ||||||||||||||
Sbjct 117 ATGGGGTTAAAGATGTCAGAATCAGCCAAGCCTTACTTTGCAATGGTTTGTCTTCAATTC 176
Query 180 GGATACGCCGGCATGAACCTCGTGACTAAGGTTGTGCTAGACCGCGGCATGAGCCATTAC 239
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 177 GGATACGCCGGCATGAACCTCGTGACGAAGGTTGTGCTAGACCGCGGCATGAGCCATTAC 236
Query 240 GTCCTTGTTGCTTATCGTAACGCCTTTGCCACGGCCGCTATAGCACCTTTTGCTCTACTC 299
|||||||| ||||| ||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct 237 GTCCTTGTGGCTTACCGTAATGCCTTTGCCACGGCTGCTATCGCACCTTTTGCTCTACTC 296
Query 300 TCCGAGAGAAAAGTGAGGCCGAAGATGACATTTCCAATATTCATGCAGATTTTTGCTCTA 359
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 297 TCCGAGAGGAAAGTGAGGCCGAAGATGACATTTCCAATATTCATGCAGATTTTTGTTCTA 356
Query 360 GCTCTTCTAGGGCCTTTGATCGATCAAAACTTATATTACGCCGGTCTCAAACTTACTTCA 419
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 357 GCTCTTCTCGGGCCTTTGATCGATCAAAATTTATATTACGCCGGTCTCAAACTTACTTCA 416
Query 420 CCAACTTTTGCCGGCGCAGTCACCAATATCGTTCCTGCTTTGACCTATATCATTTCCATA 479
||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||
Sbjct 417 CCAACTTTTGCCGGCGCAGTCACAAATATCGTTCCAGCTTTGACCTTTATCATTTCCATA 476
Query 480 ATTTGCAGGATGGAGAAGGTGGAGATGAGAAAAGTAAGATTCCAAGCCAAAGTGGTGGGG 539
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 477 ATTTGCAGGATGGAGAAGGTGGAGATGAGAAAAGTAAGATTCCAAGCAAAAGTGGTGGGG 536
Query 540 ACATTAGTGATAGTGGTTGGAGCCATGTTGATGATTTTATTCAAAATTCCTCTAATCAGC 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 537 ACATTAGTGATAGTGGTTGGAGCCATGTTGATGATTTTATTCAAAATTCCTCTAATCACC 596
Query 600 TTTCTCCGATCTCACCTCACCGGCCAT--TCT-TCGCCGGCCTGTGAGGATTACCTCAAA 656
||||||||||||||||||||||||||| | | |||||||| ||||||| |||||||||
Sbjct 597 TTTCTCCGATCTCACCTCACCGGCCATGCTTTGTCGCCGGCAGGTGAGGACTACCTCAAA 656
Query 657 GCCACTGTCTTCCTCCTCATCGCCTCATTTTCTTGGGCTTCCTTTTTCGTTCTTCAGGCG 716
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GCCACCGTCTTCCTCCTCATCGCCTCATTTTCTTGGGCTTCCTTTTTCGTTCTTCAGGCG 716
Query 717 GCTACGTTGAAGAGATACTCATCTCATCTTTCATTATCGACCATGGTGTGCTTCATGGGC 776
|||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct 717 GCTACGTTGAAGAGATACTCATCTCACCTTTCATTATCGACGATGGTGTGTTTCATGGGC 776
Query 777 ACGTTACAGTCCACAGCCTTAACGTTTGTGATGGAGCCAAACCTTTCTGCATGGAACATT 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 ACGTTACAGTCCACAGCCTTAACGTTTGTGATGGAGCCAAACCTTTCTGCATGGAACATT 836
Query 837 GGCTTTGACATGAACCTTCTCGCCTCTGCTTACGCGGGCATAATGTCGTCGAGCATAGCG 896
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 837 GGCTTTGACATGAACCTTCTTGCCTCTGCTTATGCGGGCATAATGTCGTCGAGCATAGCG 896
Query 897 TACTACGTTCAAGGAATGATGACGAAGCAAAAGAGTGTTGTCTTTGTTACTGCTTTTAAC 956
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 897 TACTACGTTCAAGGAATGATGACGAAGCAAAAGAGTGTTATCTTTGTTACTGCTTTTAAT 956
Query 957 CCTCTTGTTGTTATAATCGGATCCATCATTGGCTTCCTCATCCTCGGCCAAAATTTATAC 1016
||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||| ||
Sbjct 957 CCTCTTGTTGTCATAATCGGATCCATCATTGGCTTCCTCATCCTCAACCAAACTTTAAAC 1016
Query 1017 CTTGGCGGGGTTCTTGGAATGGCGATATTACTAGTGGGAGTTTGCGCGGTTCTATGGGGA 1076
||||||||||||||||||||||| || ||| | |||||||||||| ||||||| ||||||
Sbjct 1017 CTTGGCGGGGTTCTTGGAATGGCAATTTTAGTGGTGGGAGTTTGCACGGTTCTTTGGGGA 1076
Query 1077 AAGGAAGGAGAT---GA--A-GAAGAGAACATTGAGGAGAAATTTCTAGAAGTTGTTAAA 1130
|||||||||||| || | |||||||||||||||||||| ||| ||||| |||| ||
Sbjct 1077 AAGGAAGGAGATATCGATGAAGAAGAGAACATTGAGGAGAAGTTTGTAGAAATTGTCAAG 1136
Query 1131 TGTTGCAACCGCTGCGATATCAAGGTTCTCTCGATGATGCCAAGAATCGATGAGGAAGTA 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TGTTGCAACCGCTGCGATATCAAGGTTCTCTCGATGATGCCAAGAATCGATGAGGAAGTA 1196
Query 1191 GACGTTGAAATGCAATCTGCAGGGACAGCTAAAGTGGCGGTGGGTTTCTCGTAACCTC-- 1248
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1197 GACGTTGAAATGCAATCCGCAGGAACAGCTAAAGTGGCGGTGGGTTTCTCGTAACCTCTC 1256
Query 1249 GTGTGTGGAAAAAGATGTTCACGAGCTTAATTAGATCCTTTGAAGTCTTCtttttttttt 1308
|||||||||||||||||||||||| |||||||||||| ||| ||||||| ||||||||
Sbjct 1257 GTGTGTGGAAAAAGATGTTCACGACCTTAATTAGATCTTTTCAAGTCTT-TTTTTTTTAA 1315
Query 1309 tttttAATTTTAGATAGAGGAGCAACTTTCTCTTTGTTGTATATCATTGCTTCAACtttt 1368
|||||||||||||||||||||||| |||||||| |||||||||||| ||||||||
Sbjct 1316 CAA--AATTTTAGATAGAGGAGCAACTTTTTCTTTGTTCTATATCATTGCTCCAACTTTT 1373
Query 1369 tctttt-ttt--aggttttgttttATAATCTTCATTAGAAGGGTAACTATTATTATTGAA 1425
| |||| ||| |||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1374 TATTTTCTTTGTAGGTTTTGTTTTATAATCTTCATTAGAAGGGTAATTATTATTATTAAA 1433
Query 1426 TAAATGTTCC 1435
||||||||||
Sbjct 1434 TAAATGTTCC 1443
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70732567905
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5