BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486110
Length=3285
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56690.1 | Symbols: CIP111 | Cam interacting protein 111 | c... 4891 0.0
> AT3G56690.1 | Symbols: CIP111 | Cam interacting protein 111 |
chr3:20993693-20998695 REVERSE LENGTH=3409
Length=3409
Score = 4891 bits (2648), Expect = 0.0
Identities = 3014/3190 (94%), Gaps = 27/3190 (1%)
Strand=Plus/Plus
Query 65 TTGCTTTTTACTCCGGAGTGTAGA-TAAGC-AAAAGCTGTAGATGCCTTCGAAGAAGAAG 122
|||||||||||||||||||||||| ||| | ||||||| ||||||||||||||||||||
Sbjct 124 TTGCTTTTTACTCCGGAGTGTAGATTAA-CAAAAAGCTAAAGATGCCTTCGAAGAAGAAG 182
Query 123 CAGTCGAGGACGCCATCTCGGCTATCCAATTCGGAACCGCCTGCGTCTCCAAGAACTCCG 182
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 183 CAGTCGAGGACGCCATCACGGCTATCCAATTCGGAACCGCCTGCATCTCCAAGAACTCCG 242
Query 183 GCGTCTTCAACAACGAGTCGAGATACAGACTT-TATCAACGAAGAAGAACTTAGGCGCAG 241
|||||||||||||| |||||||||||||| || ||||||||||||||| |||||||||||
Sbjct 243 GCGTCTTCAACAACTAGTCGAGATACAGA-TTCTATCAACGAAGAAGAGCTTAGGCGCAG 301
Query 242 TATTGAAGAAGCGTCAGCTGCGTTTCCTTCTCTTCTCGGAAAATCTGCAATCATTGGAAG 301
||||||||||||||| ||||||||||||| |||||||||||||||||||||||| | |||
Sbjct 302 TATTGAAGAAGCGTCTGCTGCGTTTCCTTGTCTTCTCGGAAAATCTGCAATCATCGCAAG 361
Query 302 AGTAGCCGATGTTGCATCAGAGTCCATCAGAGGTTCTAAGATTTGGTTATCGGAAACTTC 361
||||||||||||||||||||| || |||||||| |||||||||||| |||||||||||||
Sbjct 362 AGTAGCCGATGTTGCATCAGAATCTATCAGAGGCTCTAAGATTTGGCTATCGGAAACTTC 421
Query 362 AATGGTCGCTGCTTCTCTCAGTCCTGGTTCTACTGTATCGGTATCACTGGCTTCTCCGGA 421
|||||||||||||||||||| ||||| || ||||||||||||||||| |||||||||||
Sbjct 422 TATGGTCGCTGCTTCTCTCAGCCCTGGCTCCACTGTATCGGTATCACTAGCTTCTCCGGA 481
Query 422 AAGTAGATTTTCGAGAAGCTTCCCACTCAGCTTGATTAAATCTGAATATGGAGATGACAA 481
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
Sbjct 482 GAGTAGATTTTCGAGAAGCTTCCCACTCAGCTCGATTAAAGCTGAATATGGAGATGAC-A 540
Query 482 G-GAGAGTAGGATTGCTGATGAACCAGGGAACTATTTTGTGCTTGCCACCGTTTTCTCTT 540
| ||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 541 GTGAGAGTATCATTGCTGATGAACCAGGAAACTATTTTGTGCTTACCACCGTTTTCTCTT 600
Query 541 CTTCTAAGGTTTTGAAGGATGCTGTTCGTATTTCATTGAATCTTTGCTATGGGCTTGGTT 600
|||| |||||||| || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 601 CTTCAAAGGTTTTCAAAGATGCTGTTCGAATTTCATTGAATCTTTGCTATGGGCTTGGTT 660
Query 601 GTCCTGCTTCAGGCAGGACTGTTTTTGTTTATCCTGTTAGCGGACCTTCTTTAAGTGATC 660
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GTCCTGTTTCAGGCAGGACTGTTTTTGTTTATCCTGTTAGCGGACCTTCTTTAAGTGATC 720
Query 661 AATTCCACGGGAATGGTGGATCTCTC-AGTGATGATGTTAACCATCTATCGCTGCTTGCC 719
||||| ||||||||||| |||||| | | |||||||||||||||||||||||||||||||
Sbjct 721 AATTCAACGGGAATGGTAGATCTCGCTA-TGATGATGTTAACCATCTATCGCTGCTTGCC 779
Query 720 TGTAAAGAGTTGTGTTTGGAGTTGACTCCCTTCAGGAATATGTTACAAGCTAAAAATGCT 779
|| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 780 TGCAAAGAGTTGTGTTTAGAGTTGACTCCCTTCAGGAATATGTTACAAGCTAAGAATGCT 839
Query 780 ATTGAAAGTTCTCACGAGCAGAACGGAAATGGTAATTCAACCCCTAAGACACCATCAAAC 839
||||||||||| ||||||||||||||||||| |||||||| |||||||||||| |||||
Sbjct 840 TTTGAAAGTTCTTACGAGCAGAACGGAAATGGGAATTCAACTCCTAAGACACCAGCAAAC 899
Query 840 TTGCAAAAGTTTAGCTCTCCTCGCCCCGAATCTCCGGCTTCACCAATCTTACAGGACTCT 899
|||||||||||||| |||||||||||| ||||||||| |||||||||| || ||||||||
Sbjct 900 TTGCAAAAGTTTAGTTCTCCTCGCCCCAAATCTCCGGTTTCACCAATCATAGAGGACTCT 959
Query 900 GTTTTCAGTAGCAAGCAGCGGTTTTCATTTGAAAGCTCGATTGATCTACGAGAGGTGTTG 959
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 960 GTTTTCAGTTGCAAGCAGCGGTTTTCATCTGAAAGCTCGATTGATCTACGAGAGGTGTTG 1019
Query 960 AGCAATGAAAGTTCGAAGAAACTTCTGCAGATTTGTGCAAGTTCGTGGCTTTACCCTTGT 1019
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 1020 AGCAATGAAAGTTCGAAAAAACTTTTGCAGATTTGTGCAAGTTCGTGGCTTTACCCTTGT 1079
Query 1020 AGCCTGCTATATGGGAATTTTGTGGCTGTGCCAATTCTCTCAGAAATCTGTATATTCTGT 1079
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1080 AGCCTGCTATATGGGAATTTTGTGTCTGTGCCAATTCTCTCAGAAATCTGTATATTCTGC 1139
Query 1080 GTCAAAAGGGCTGATAAAAGGCAATCTGATACATCCAAGAGAAATCAAGCTTTTATAATC 1139
|||||||| ||||||||||||| |||||| |||||||| |||||||| |||||||| |||
Sbjct 1140 GTCAAAAGAGCTGATAAAAGGCCATCTGACACATCCAACAGAAATCATGCTTTTATGATC 1199
Query 1140 AATCAGGAAACTAAAGTCTACCTCCATCATACATTGGACTTAGCATCTGAAATTCGAGAG 1199
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
Sbjct 1200 AATCAGGAAACTAAAGTCTACCTCCATCATACATTAGACTTAGCATCTGAAATTCAAGGG 1259
Query 1200 AGAAAATCTGTGCAAGGTCTCCAGTTTGATGAAGACGATGAAGGAGAAAATGTGGGATGT 1259
|||| || ||| |||||||| || || | ||||||||||||||||||||||||
Sbjct 1260 AGAACATTTGTACAAGGTCTGCA-ATT--T------GATGAAGGAGAAAATGTGGGATGT 1310
Query 1260 GAAATCTCAAAGTTAGGTGGCCTCTCTAAAGAATATGCAATTTTAAGGGACAT-AGTTGT 1318
|||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||
Sbjct 1311 GAAATCTCAAAGTTAGGTGGTCTCTCTAAAGAATATGCAATTTTAAGGGACATCA-TTGA 1369
Query 1319 TTCCTCGTCCACAAAGAATTCCTTATCAAGTCTTGGTTTGCGACCTACCAAGGGAGTGCT 1378
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1370 TTCTTCGTCCATAAAGAATTCCTTATCAAGTCTTGGTTTGCGACCTACCAAGGGAGTGCT 1429
Query 1379 TATTTATGGACCTCCAGGCACAGGAAAAACATCTTTAGCTCGGTCCTTTGCCCGCGATTC 1438
|||| ||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 1430 TATTCATGGACCTCCAGGCACAGGAAAAACATCTTTGGCTCGAACCTTTGCCCGCCATTC 1489
Query 1439 TGGTGTCAACTTTTTCTCTGTGAATGGACCTGAGATTATAAGCCAGTATTTGGGCGAAAG 1498
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1490 TGGTGTCAACTTTTTCTCTGTGAATGGACCAGAGATTATAAGCCAGTATTTGGGTGAAAG 1549
Query 1499 CGAGAAAGCTCTAGATGAGGTTTTCAGATCTGCTAGCAATGCTACACCAGCTGTGGTGTT 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1550 CGAGAAAGCTCTAGATGAGGTTTTCAGATCTGCTAGCAATGCTACACCAGCTGTGGTGTT 1609
Query 1559 CATTGATGACTTGGATGCCATTGCTCCTGCTCGGAAAGAAGGAGGCGAAGAATTGTCTCA 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 CATTGATGACTTGGATGCCATTGCTCCTGCTCGGAAAGAAGGAGGCGAAGAATTGTCTCA 1669
Query 1619 GAGGATGGTAGCTACATTACTGAATTTAATGGATGGAATAAGTAGGA-GTGATGGCGTTG 1677
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1670 GAGGATGGTAGCTACATTACTGAATTTAATGGATGGAATAAGTAGGACG-GATGGCGTTG 1728
Query 1678 TTGTAATTGCTGCAACCAATAGGCCTGATAGCATTGAGCCTGCCCTTAGACGGCCAGGAA 1737
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1729 TTGTAATTGCTGCAACCAATAGGCCTGATAGCATTGAGCCCGCCCTTAGACGGCCAGGAA 1788
Query 1738 GACTTGACAGGGAAATTGAAATTGGTGTACCATCTTCTGCACAACGGTCCGATATACTTC 1797
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1789 GACTTGACAGGGAAATTGAAATTGGTGTACCATCTTCTACACAACGGTCCGATATACTTC 1848
Query 1798 GCGTCATTCTCCATGGGATGCGGCATTCACTGTCAGACATCCAGATTGAACAGCTTGCTA 1857
| | ||||||| |||||||||||||||||| ||| |||||||| |||||||||||||||
Sbjct 1849 ACATAATTCTCCGTGGGATGCGGCATTCACTTTCAAACATCCAGGTTGAACAGCTTGCTA 1908
Query 1858 TGGCAACACATGGTTTTGTTGGTGCAGATCTGTCTGCACTGTGTTGTGAGGCAGCCTTTG 1917
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1909 TGGCAACCCATGGTTTTGTTGGTGCAGATCTGTCTGCACTGTGTTGTGAGGCAGCCTTTG 1968
Query 1918 TATGCTTAAGGCGGCATCTTGATCAGAGTTCCTCTTCTAGCAATTTGCCTCTTGAAGAAG 1977
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1969 TCTGCTTAAGGCGGCATCTTGATCAGAGTTCCTCTTCTAGCAATTTGCCCCTTGAAGAAG 2028
Query 1978 CACCTATTGCTGAGTCCTCGACAAATATGTCAGACATATCATCTGATAGTTCGGATTCTG 2037
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2029 CACCTATTGCTGAGTCCTCGTCAAATATGTCAGACATATCATCTGATAGTTCGGATTCTG 2088
Query 2038 CATCGTCATGTATAACAGTTTCACCCACAACTTCAGGGGCTCAGCGTACATTTAGTTTAA 2097
||||||||||||| ||| ||||| ||||||||||||||||||||||| ||||||||||
Sbjct 2089 CATCGTCATGTATCACAATTTCAGCCACAACTTCAGGGGCTCAGCGTTCATTTAGTTTGG 2148
Query 2098 ATGGGACAGTCTCCCGAGTAGCGGATGATATTCAAAGCAGTAGCAACTCTTGTTCGGAAC 2157
||| |||||| |||| |||||||||||||||||||| || | ||||||||||||| ||||
Sbjct 2149 ATGAGACAGTTTCCCTAGTAGCGGATGATATTCAAAACAATGGCAACTCTTGTTCTGAAC 2208
Query 2158 AGATACTTAGAAAAGAAG-ACGAACGTACCTTAAGTGTAGGATTTGAAGATTTTGAAAAC 2216
|||| ||||||||| ||| | |||| |||||||||||| ||||||||||||||||||||
Sbjct 2209 AGATGCTTAGAAAACAAGGA-GAACATACCTTAAGTGTTGGATTTGAAGATTTTGAAAAT 2267
Query 2217 GCTAAGATCAAAATCAGACCTAGTGCCATGCGAGAGGTGATATTAGAGGTTCCTAAAGTT 2276
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2268 GCTAAGACCAAAATCAGACCTAGTGCCATGCGAGAGGTGATATTAGAGGTTCCTAAAGTT 2327
Query 2277 AACTGGGAAGATGTTGGTGGCCAAAATGAGGTGAAAAATCAGCTAATGGAAGCAGTAGAA 2336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2328 AACTGGGAAGATGTTGGTGGCCAAAATGAGGTGAAAAATCAGCTAATGGAAGCAGTAGAA 2387
Query 2337 TGGCCTCAAAAACATCAGGACGCATTCAAGAGAATAGGTACAAGGCCACCCAGTGGGATA 2396
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2388 TGGCCTCAAAAACATCAGGACGCATTCAAGAGAATAGGTACAAGGCCACCAAGTGGGATA 2447
Query 2397 CTGATGTTTGGTCCACCTGGATGTAGCAAGACCCTTATGGCACGTGCCGTAGCTTCTGAA 2456
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2448 CTGATGTTTGGTCCTCCTGGATGTAGCAAGACCCTTATGGCACGTGCAGTAGCTTCTGAA 2507
Query 2457 GCCAAGCTGAATTTCCTTGCAGTCAAAGGTCCAGAACTATTCAGCAAATGGGTTGGTGAA 2516
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2508 GCCAAGCTGAATTTTCTTGCTGTCAAAGGTCCAGAACTATTCAGCAAATGGGTTGGTGAA 2567
Query 2517 TCCGAAAAGGCCGTTAGGTCCCTTTTCGCAAAGGCAAGAGCAAATGCCCCCTCCATTATA 2576
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2568 TCCGAAAAGGCTGTTAGGTCCCTATTCGCAAAGGCAAGAGCAAATGCCCCCTCCATTATC 2627
Query 2577 TTTTTCGATGAGATAGATAGTCTTGCCTCCATTAGGGGGAAAGAAAATGATGGGGTGTCA 2636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2628 TTTTTCGATGAGATAGATAGTCTTGCCTCCATTAGGGGGAAAGAAAATGATGGGGTGTCA 2687
Query 2637 GTTTCAGACAGAGTTATGAGCCAACTTCTTGTGGAGCTCGATGGTTTGCATCAAAGAGTT 2696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2688 GTTTCAGACAGAGTTATGAGCCAACTTCTTGTGGAGCTCGATGGTTTGCATCAAAGAGTT 2747
Query 2697 GGTGTTACTGTTATTGCTGCTACAAACCGGCCAGACAAGATCGATTCTGCCCTACTAAGA 2756
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2748 GGTGTTACCGTCATTGCTGCTACAAACCGGCCAGACAAGATCGATTCTGCCCTACTAAGA 2807
Query 2757 CCTGGACGTTTTGACCGCTTGCTATATGTTGGACCTCCTGATGAAGCTGATCGCGAAGCA 2816
||||| || ||||| |||||||||||||| ||||||||| ||||| ||||||||||||||
Sbjct 2808 CCTGGGCGCTTTGATCGCTTGCTATATGTCGGACCTCCTAATGAAACTGATCGCGAAGCA 2867
Query 2817 ATACTCAAAATCCATTTGCGTAAAATCCCATGCAGCTCGGATATTTGTTTAAAGGAATTC 2876
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2868 ATACTCAAAATCCATTTGCGTAAAATCCCATGCAGCTCTGATATTTGTTTAAAGGAATTG 2927
Query 2877 GCTTCCATTACCAAAGGCTACACAGGAGCTGACATATCATTGATATGTAGAGAAGCAGCT 2936
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 2928 GCTTCCATTACCAAAGGCTATACAGGAGCTGACATATCATTGATATGCAGAGAAGCAGCT 2987
Query 2937 ATTGCTGCACTTGAGGAGAGTCTTGAGATGGAGGAAATAAGCATGCGACATTTAAAAGCT 2996
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2988 ATTGCTGCACTTGAGGAGAGTCTTGAAATGGAGGAAATAAGCATGCGACATTTAAAAGCT 3047
Query 2997 GCAATTAGCCAAATCGAACCAACAGAGATTCAATCTTACAAAGCATTGTCTGAAAAATTC 3056
|| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 3048 GCGATTAGCCAAATCGAACCAACAGAGATTCTGTCTTACAAAGCACTGTCTGAAAAATTC 3107
Query 3057 CAAAGACTTGTCCATACAG-CTCCAAAAAGAGAAGAGGAAGTTACACAACCAGGAAACAA 3115
||||||||||||||||||| | ||| ||||||||||||| ||||||||||||||||||||
Sbjct 3108 CAAAGACTTGTCCATACAGAC-CCACAAAGAGAAGAGGAGGTTACACAACCAGGAAACAA 3166
Query 3116 AAGCCGATCTCTGTGGACACCATTGAAATCAGTTGCGATGTTTCTTCGCCGCCACATTGG 3175
|||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 3167 AAGCCGATCTCTATGGACACCATTGAGATCAGTTGCCATGTTTCTTCGCCGCCACATTGC 3226
Query 3176 TTCGTAAACAAATGTTGTTACCAGCAAACTTGGGCAATTCTCCATCGTTAACATACGTAt 3235
||||||||||||||||| |||||||||||| || ||||||||||| |||| |||||||
Sbjct 3227 TTCGTAAACAAATGTTGAAACCAGCAAACTTTGGAAATTCTCCATCACTAACGTACGTAT 3286
Query 3236 ttt-tttGTT 3244
| | ||||||
Sbjct 3287 TGTGTTTGTT 3296
Score = 102 bits (55), Expect = 2e-20
Identities = 70/77 (91%), Gaps = 1/77 (1%)
Strand=Plus/Plus
Query 1 GAGAAATTGAAGGTTTTTCCTCTCGGCTCCTTATCTCCGGCGAGGATCGCCGGCGTTCTG 60
|||||||||||| |||||| | ||||||| ||||||||||||||||||||||||||||||
Sbjct 27 GAGAAATTGAAGATTTTTCATTTCGGCTCTTTATCTCCGGCGAGGATCGCCGGCGTTCTG 86
Query 61 TAACTTGCTTTTTACTC 77
|||||| ||| |||||
Sbjct 87 TAACTTA-TTTATACTC 102
Score = 84.2 bits (45), Expect = 7e-15
Identities = 49/51 (96%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 3235 tttttttGTTGCGTCTCACAGACTTGTACGAATCAACAGAACAAATAGCAT 3285
||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 3311 TTTTTTTGTTGCGTCTCACAGACTTGTACGAATCAACGGAACAAATAACAT 3361
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 163443900294
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5