BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486111
Length=807
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56710.1 | Symbols: SIB1 | sigma factor binding protein 1 | ... 1153 0.0
> AT3G56710.1 | Symbols: SIB1 | sigma factor binding protein 1
| chr3:21006750-21007565 REVERSE LENGTH=816
Length=816
Score = 1153 bits (624), Expect = 0.0
Identities = 751/809 (93%), Gaps = 21/809 (3%)
Strand=Plus/Plus
Query 1 AAACATCTGAATTCTCTTACAGGAACCGAACATGGAGTCATCATCATCGACGTTTCTCAC 60
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 27 AAACATCTGAATTCTCTTACAGGAACCGAACATGGAGTCATCATCGTCGACTTTTCTCAC 86
Query 61 CGCGACAAGCTTAGACAAGAGAAAACCATCTCCGGTTTCAAGAAAATCACCAAAGCAAAA 120
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 87 CACGACAAGCTTAGACAAGAAAAAACCATCTCCGGTTTCAAGAAAATCACCAAAGCAAAA 146
Query 121 GAAGAAGACGACTTCGACGAACAAACCCATCAAAGTCCGTTACATCTCAAACCCCATGAG 180
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 147 GAAGAAGACGACTTCGACGAATAAACCCATCAAAGTTCGTTACATCTCAAACCCCATGAG 206
Query 181 AGTTCAAACTTGTGCTTCTAAGTTCAGAGAGCTCGTTCAAGAACTCACAGGCCAAGACGC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 207 AGTTCAAACTTGTGCTTCTAAGTTCAGAGAGCTCGTTCAAGAACTCACAGGCCAAGACGC 266
Query 241 CGTCGATCTTCAACCGGAGCCTATCTATTCCCCTTCCTCCGACGACCACAACCTTTCTCC 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 267 CGTCGATCTTCAACCGGAGCCCATCTATTCCCCTTCCTCCGACGACCACAACCTTTCTCC 326
Query 301 ACCGTCGTTTACGGCGGAGAATCTTGCGCCACGTGTTCTTCATCAGGAGCCGTTCGATGA 360
| | ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 327 A----C-----CGGCGGAGAATCTTGCGCCACGTGTTCTTCATCAGGAGCCGTTCGGTGA 377
Query 361 GAGAGTCAGTGACTGTTACGTGCCGCCGTTGAATGGGGAAGAGATGTTTTTACCTGATCA 420
||||| |||||| ||||| || ||||||||||| |||||| |||||||||||||||||
Sbjct 378 GAGAGACAGTGATTGTTA--TG-AGCCGTTGAATGCGGAAGACATGTTTTTACCTGATCA 434
Query 421 GATGTCGGCAGGTTTTTCTGGGTTTTTCTCTAATGGGTTTTACAATGTGAATGACTTTGG 480
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 435 GATGTCGGCAGGTTTTTCTGGGTTTTTCTCTAATGGGTTTTACAATGTCAATGACTTTGG 494
Query 481 AAGCATCGATTCTATGTGATAATCTTACGGAGTTTTTCTTAGGGGTTTCAT-TAACTAGG 539
|||||||||||||||||||||||||| | |||||||| ||||||||||||| || |||
Sbjct 495 AAGCATCGATTCTATGTGATAATCTTTCAGAGTTTTTATTAGGGGTTTCATCTAG-TAGA 553
Query 540 TACATATAATTATGAAATCCATACATGAATTTAACTCCCAAATTGATACATGGATATGTT 599
|| |||| ||||||| ||| |||||| |||||||| ||||||||||||||||||||||||
Sbjct 554 TATATATCATTATGATATCGATACATAAATTTAACCCCCAAATTGATACATGGATATGTT 613
Query 600 AATTACTATAGGGTTTGTGATGCGAATTAGTATATGAGTAAGTTAttttgtaaacagttt 659
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 614 AATTACTATAGGGTTTGGGATGCGAATTAGTATATGAGTAAGTTGTTTTGTAAACAGTTT 673
Query 660 tttct-cttaaatttttttgtttgttttgtCTCACATCAAAGCTTCTGTAATGTATGAAA 718
||| | ||||||||| |||||||||||| ||| |||||||| |||| ||||||||||||
Sbjct 674 TTTTTTCTTAAATTTGTTTGTTTGTTTTTTCTTACATCAAAACTTCGGTAATGTATGAA- 732
Query 719 CATATTTTTTATTTAATCAAGAAACATGTGATAATCTTAAGTTAGCGGATTAGTAAGCCT 778
|||||||| |||||||||||||||||||||||||||| ||||||||| |||| |||||||
Sbjct 733 CATATTTTCTATTTAATCAAGAAACATGTGATAATCTAAAGTTAGCG-ATTAATAAGCCT 791
Query 779 AGCTTCAAGTTCATATTGAGCATTTTCAT 807
| ||||||||||||||| ||||||||
Sbjct 792 ---T-CAAGTTCATATTGAGTATTTTCAT 816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39283102954
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5