BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486112 Length=1328 Score E Sequences producing significant alignments: (Bits) Value AT3G56720.3 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1526 0.0 > AT3G56720.3 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages. | chr3:21011053-21013422 FORWARD LENGTH=1554 Length=1554 Score = 1526 bits (826), Expect = 0.0 Identities = 964/1032 (93%), Gaps = 4/1032 (0%) Strand=Plus/Plus Query 4 TCAAGCTCCATGGATACCGAACTGAATTCACCACCGCATGGTGATGGAGGTGATACCACA 63 |||||||||||||| |||||||||||||| || ||||||| |||||| ||||||||||| Sbjct 196 TCAAGCTCCATGGACACCGAACTGAATTCTCCTCCGCATGATGATGGTGGTGATACCACT 255 Query 64 ACCGCTTTTCGAAAGCCTTCCAATGACGGGGCTAGCAGAAAATATCGTCGTCGAGCTTTA 123 |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| Sbjct 256 ACCGCTTTTCGAAAGCCTTCCAATGACGGGACTAGCAGAAAATATCGCCGTCGAGCTTTA 315 Query 124 GCTGACGATGGCTCATCTTCATCTGATGGAAGTCCTGAACGTAATCAGAGCCCTAATCCA 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 316 GCTGACGATGGCTCATCTTCATCTGATGGAAGTCCTGAACGTAATCAGAGCCCTAATCCA 375 Query 184 AAGCATTCTAGGAAAGATTCTGAACCACTTCATGCGAGGAAAGAGGATAGGCGAGAATCT 243 ||||||||||||||||||||||||||| |||||| ||||||||||||||| | |||||| Sbjct 376 AAGCATTCTAGGAAAGATTCTGAACCAGTTCATGTGAGGAAAGAGGATAGATGGGAATCT 435 Query 244 GATCGCAGTCGCTATGGTAGAGGTGGTATTGATTCGCATAAACGTGATAGGTACTCTAGG 303 ||||||||||| ||||||||||| ||| ||||||| |||| || |||||||||||||||| Sbjct 436 GATCGCAGTCGTTATGGTAGAGGAGGTGTTGATTCACATAGACATGATAGGTACTCTAGG 495 Query 304 GATGATAATTACGGATCTAAGCGTGATGAGTACAACAGACATGAGAGGGATGCAC-ATCG 362 |||||||||||||||| ||||||||||||||| |||||||||| ||||||||| | || Sbjct 496 GATGATAATTACGGATATAAGCGTGATGAGTATAACAGACATGGGAGGGATGCGCGTTC- 554 Query 363 TTCTAGCCATGATCCAAGAGGTGGCCGACATTCCGACCGCAGAAGAGTGGAGACTGAACA 422 | |||||| |||| ||||||||||| ||||||| ||||| |||||||||||||||||| | Sbjct 555 TACTAGCCGTGATTCAAGAGGTGGCAGACATTCTGACCGTAGAAGAGTGGAGACTGAATA 614 Query 423 TAGCAGGTCAAGAAATGATTCAGACAGACA-TTCCCGTGATAAGTATAGCAACTCTGGAC 481 |||||||| ||||||||| ||||||||| | ||||| ||||||||||||||||||||||| Sbjct 615 TAGCAGGTTAAGAAATGACTCAGACAGA-AGTTCCCATGATAAGTATAGCAACTCTGGAC 673 Query 482 ATAGAGTCAATAGTGAGGAGAAAGGTGAAGGTTTGTCATCTGGTAGGAGACACGCAGACT 541 |||||||||| ||| | ||||||||||||| |||||||||||||||||||||| |||||| Sbjct 674 ATAGAGTCAAAAGTAACGAGAAAGGTGAAGATTTGTCATCTGGTAGGAGACACTCAGACT 733 Query 542 CAAGATTAGAGGATAATGAGAAAAGAGGTTCTCGCTGGAGTTTTGGTGACCGCCATTCCC 601 ||||| | |||||||||||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 734 CAAGAGTGGAGGATAATGAGAAAAGAGGTTCTCGCTGGGGTTTTGGTGACCGTCATTCCC 793 Query 602 GTGATGAAAGAAAGGAACATGAGGACCCTGAGATTAGAAAGGAGAAGGATGTTCATATCA 661 ||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||| Sbjct 794 GTGTTGAAAGAAAGGAACATGAGGACCCTGAGATTAGCAAGGAGAAGGAGGTTCATGTCA 853 Query 662 AATCTCCAAGAGACCGTTCTGATGATAAATGTATGGCCACTGAGAATCGAGATACTCATT 721 ||||| |||||||||||||||||| |||||| |||| || ||| ||||||||||||||| Sbjct 854 AATCTTCAAGAGACCGTTCTGATGGGAAATGTTTGGCTACAGAGGATCGAGATACTCATT 913 Query 722 CTAAGAAACTGAAGGGGTTCATATCAGAGAAGTTTACTACTGGCAATACTAATGAAGAGA 781 |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 914 CTAAGAAACTGAAGGGTTTCATATCAGACAAGTTTACTACTGGCAATACTAATGAAGAGA 973 Query 782 AACAGACGTCAATCTTAAAGCCTGCACCCGGTGATGTTGATGCTGCAAAAGTTGCAGCTA 841 ||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 974 AACAGACATCAATCTTAAAGCCTTCCCCCGGTGATGTTGATGCTGCAAAAGTTGCAGCTA 1033 Query 842 TGCAGGCTGCTGAATTAGTGAATAAAAACCTTGTTGGAACGGGTTACCTGACAACAGATC 901 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1034 TGCAGGCTGCTGAATTAGTGAATAAAAACCTTGTTGGAACGGGTTACCTGACAACAGATC 1093 Query 902 AAAAGAAGAAGTTATTGTGGGGAAAAAAGAAAAGCACGGCTTCAGAAGAGTCTGCTCATC 961 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1094 AAAAGAAGAAGTTATTGTGGGGAAAAAAGAAAAGCACGGCTTCAGAAGAGTCTGCTCATC 1153 Query 962 GTTGGGATAATGCTAGTGCGCTAATTGGTGACCCTGAACGACAAGAAAAATTCAACAAAC 1021 ||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||| Sbjct 1154 GTTGGGATAATGCGAGTGCGCTAATTGGTGACCCTGAACGGCAAGAAAAGTTCAACAAAC 1213 Query 1022 TTATGGGTGTGA 1033 ||||| || ||| Sbjct 1214 TTATGAGTCTGA 1225 Score = 466 bits (252), Expect = 2e-130 Identities = 286/303 (94%), Gaps = 0/303 (0%) Strand=Plus/Plus Query 1026 GGGTGTGAAAGCGAATATAGTAAACCAAGAGCAGAACCTGAGCGAAGTCGAGGTGGAGAA 1085 ||||||||||||||| |||||||||||||||| |||||| |||||||||||| ||||| Sbjct 1249 GGGTGTGAAAGCGAAGGTAGTAAACCAAGAGCAAAACCTGGGCGAAGTCGAGGCCGAGAA 1308 Query 1086 GCAGAAAGAGTTGCAGATGGACCTAGAGAAGCAGTACACAGCAGGGTTAAGGAGGAGAGA 1145 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1309 GCAGAAAGAGTTGCAGATGGATCTAGAGAAGCAGTACACAGCAGGGTTAAGGAGGAGAGA 1368 Query 1146 TGGGCGAACAGTAGGGTTAGGTCTTTGAACCTTTTTGGTAAATTATTCTCATACTCTCGT 1205 ||| |||||||||||||||||||||||||||| ||||||||||| ||| |||||||| || Sbjct 1369 TGGACGAACAGTAGGGTTAGGTCTTTGAACCTCTTTGGTAAATTGTTCGCATACTCTTGT 1428 Query 1206 CTCCTTCTAAGCAATCTTGTAGCATCTTCTTTTTGTACTCTACTACTCTTGCCAAATCCC 1265 |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| Sbjct 1429 CTCCTTCTAAGCAATCTTTTAGCATCTTCTTTTTGTACTCTACTACTCTTGCTAAATCCC 1488 Query 1266 TTGATCACAGTTACCTCAATGTGTGTAAGAATTAAGTGCAGTAACCATGTTTTGAGACCA 1325 || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1489 TTTATTTCAGTTACCTCAATGTGTGTAAGAATTAAGTGCAGTAACCATGTTTTGAGACCA 1548 Query 1326 CCC 1328 ||| Sbjct 1549 CCC 1551 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65361109590 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5