BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486112
Length=1328
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56720.3 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1526 0.0
> AT3G56720.3 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 24
plant structures; EXPRESSED DURING: 15 growth stages. | chr3:21011053-21013422
FORWARD LENGTH=1554
Length=1554
Score = 1526 bits (826), Expect = 0.0
Identities = 964/1032 (93%), Gaps = 4/1032 (0%)
Strand=Plus/Plus
Query 4 TCAAGCTCCATGGATACCGAACTGAATTCACCACCGCATGGTGATGGAGGTGATACCACA 63
|||||||||||||| |||||||||||||| || ||||||| |||||| |||||||||||
Sbjct 196 TCAAGCTCCATGGACACCGAACTGAATTCTCCTCCGCATGATGATGGTGGTGATACCACT 255
Query 64 ACCGCTTTTCGAAAGCCTTCCAATGACGGGGCTAGCAGAAAATATCGTCGTCGAGCTTTA 123
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 256 ACCGCTTTTCGAAAGCCTTCCAATGACGGGACTAGCAGAAAATATCGCCGTCGAGCTTTA 315
Query 124 GCTGACGATGGCTCATCTTCATCTGATGGAAGTCCTGAACGTAATCAGAGCCCTAATCCA 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 GCTGACGATGGCTCATCTTCATCTGATGGAAGTCCTGAACGTAATCAGAGCCCTAATCCA 375
Query 184 AAGCATTCTAGGAAAGATTCTGAACCACTTCATGCGAGGAAAGAGGATAGGCGAGAATCT 243
||||||||||||||||||||||||||| |||||| ||||||||||||||| | ||||||
Sbjct 376 AAGCATTCTAGGAAAGATTCTGAACCAGTTCATGTGAGGAAAGAGGATAGATGGGAATCT 435
Query 244 GATCGCAGTCGCTATGGTAGAGGTGGTATTGATTCGCATAAACGTGATAGGTACTCTAGG 303
||||||||||| ||||||||||| ||| ||||||| |||| || ||||||||||||||||
Sbjct 436 GATCGCAGTCGTTATGGTAGAGGAGGTGTTGATTCACATAGACATGATAGGTACTCTAGG 495
Query 304 GATGATAATTACGGATCTAAGCGTGATGAGTACAACAGACATGAGAGGGATGCAC-ATCG 362
|||||||||||||||| ||||||||||||||| |||||||||| ||||||||| | ||
Sbjct 496 GATGATAATTACGGATATAAGCGTGATGAGTATAACAGACATGGGAGGGATGCGCGTTC- 554
Query 363 TTCTAGCCATGATCCAAGAGGTGGCCGACATTCCGACCGCAGAAGAGTGGAGACTGAACA 422
| |||||| |||| ||||||||||| ||||||| ||||| |||||||||||||||||| |
Sbjct 555 TACTAGCCGTGATTCAAGAGGTGGCAGACATTCTGACCGTAGAAGAGTGGAGACTGAATA 614
Query 423 TAGCAGGTCAAGAAATGATTCAGACAGACA-TTCCCGTGATAAGTATAGCAACTCTGGAC 481
|||||||| ||||||||| ||||||||| | ||||| |||||||||||||||||||||||
Sbjct 615 TAGCAGGTTAAGAAATGACTCAGACAGA-AGTTCCCATGATAAGTATAGCAACTCTGGAC 673
Query 482 ATAGAGTCAATAGTGAGGAGAAAGGTGAAGGTTTGTCATCTGGTAGGAGACACGCAGACT 541
|||||||||| ||| | ||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 674 ATAGAGTCAAAAGTAACGAGAAAGGTGAAGATTTGTCATCTGGTAGGAGACACTCAGACT 733
Query 542 CAAGATTAGAGGATAATGAGAAAAGAGGTTCTCGCTGGAGTTTTGGTGACCGCCATTCCC 601
||||| | |||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 734 CAAGAGTGGAGGATAATGAGAAAAGAGGTTCTCGCTGGGGTTTTGGTGACCGTCATTCCC 793
Query 602 GTGATGAAAGAAAGGAACATGAGGACCCTGAGATTAGAAAGGAGAAGGATGTTCATATCA 661
||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||
Sbjct 794 GTGTTGAAAGAAAGGAACATGAGGACCCTGAGATTAGCAAGGAGAAGGAGGTTCATGTCA 853
Query 662 AATCTCCAAGAGACCGTTCTGATGATAAATGTATGGCCACTGAGAATCGAGATACTCATT 721
||||| |||||||||||||||||| |||||| |||| || ||| |||||||||||||||
Sbjct 854 AATCTTCAAGAGACCGTTCTGATGGGAAATGTTTGGCTACAGAGGATCGAGATACTCATT 913
Query 722 CTAAGAAACTGAAGGGGTTCATATCAGAGAAGTTTACTACTGGCAATACTAATGAAGAGA 781
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 914 CTAAGAAACTGAAGGGTTTCATATCAGACAAGTTTACTACTGGCAATACTAATGAAGAGA 973
Query 782 AACAGACGTCAATCTTAAAGCCTGCACCCGGTGATGTTGATGCTGCAAAAGTTGCAGCTA 841
||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 974 AACAGACATCAATCTTAAAGCCTTCCCCCGGTGATGTTGATGCTGCAAAAGTTGCAGCTA 1033
Query 842 TGCAGGCTGCTGAATTAGTGAATAAAAACCTTGTTGGAACGGGTTACCTGACAACAGATC 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1034 TGCAGGCTGCTGAATTAGTGAATAAAAACCTTGTTGGAACGGGTTACCTGACAACAGATC 1093
Query 902 AAAAGAAGAAGTTATTGTGGGGAAAAAAGAAAAGCACGGCTTCAGAAGAGTCTGCTCATC 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1094 AAAAGAAGAAGTTATTGTGGGGAAAAAAGAAAAGCACGGCTTCAGAAGAGTCTGCTCATC 1153
Query 962 GTTGGGATAATGCTAGTGCGCTAATTGGTGACCCTGAACGACAAGAAAAATTCAACAAAC 1021
||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1154 GTTGGGATAATGCGAGTGCGCTAATTGGTGACCCTGAACGGCAAGAAAAGTTCAACAAAC 1213
Query 1022 TTATGGGTGTGA 1033
||||| || |||
Sbjct 1214 TTATGAGTCTGA 1225
Score = 466 bits (252), Expect = 2e-130
Identities = 286/303 (94%), Gaps = 0/303 (0%)
Strand=Plus/Plus
Query 1026 GGGTGTGAAAGCGAATATAGTAAACCAAGAGCAGAACCTGAGCGAAGTCGAGGTGGAGAA 1085
||||||||||||||| |||||||||||||||| |||||| |||||||||||| |||||
Sbjct 1249 GGGTGTGAAAGCGAAGGTAGTAAACCAAGAGCAAAACCTGGGCGAAGTCGAGGCCGAGAA 1308
Query 1086 GCAGAAAGAGTTGCAGATGGACCTAGAGAAGCAGTACACAGCAGGGTTAAGGAGGAGAGA 1145
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1309 GCAGAAAGAGTTGCAGATGGATCTAGAGAAGCAGTACACAGCAGGGTTAAGGAGGAGAGA 1368
Query 1146 TGGGCGAACAGTAGGGTTAGGTCTTTGAACCTTTTTGGTAAATTATTCTCATACTCTCGT 1205
||| |||||||||||||||||||||||||||| ||||||||||| ||| |||||||| ||
Sbjct 1369 TGGACGAACAGTAGGGTTAGGTCTTTGAACCTCTTTGGTAAATTGTTCGCATACTCTTGT 1428
Query 1206 CTCCTTCTAAGCAATCTTGTAGCATCTTCTTTTTGTACTCTACTACTCTTGCCAAATCCC 1265
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1429 CTCCTTCTAAGCAATCTTTTAGCATCTTCTTTTTGTACTCTACTACTCTTGCTAAATCCC 1488
Query 1266 TTGATCACAGTTACCTCAATGTGTGTAAGAATTAAGTGCAGTAACCATGTTTTGAGACCA 1325
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1489 TTTATTTCAGTTACCTCAATGTGTGTAAGAATTAAGTGCAGTAACCATGTTTTGAGACCA 1548
Query 1326 CCC 1328
|||
Sbjct 1549 CCC 1551
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65361109590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5