BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486114
Length=1594
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56750.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2462 0.0
AT2G41150.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1074 0.0
> AT3G56750.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G41150.2);
Has 128 Blast hits to 128 proteins in 16 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 117; Viruses
- 0; Other Eukaryotes - 11 (source: NCBI BLink). | chr3:21018089-21020431
REVERSE LENGTH=1688
Length=1688
Score = 2462 bits (1333), Expect = 0.0
Identities = 1532/1623 (94%), Gaps = 33/1623 (2%)
Strand=Plus/Plus
Query 1 AAGCCGAGAAGCATTATC-GGAGCT-ATC-ATCTCTGGATCAGGTTGGGATCCGCCACAA 57
|||||||||||||||||| | | || | | ||||||||||||| ||||||||||||||
Sbjct 31 AAGCCGAGAAGCATTATCTGAATCTGAGCTATCTCTGGATCAGCTTGGGATCCGCCACGT 90
Query 58 CACTTCTGACAGCTGCCGGAGACGAACCTCACGTGACCGTTCTTCAGATCGGGTCTTCTG 117
||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 91 CACTTCTGACAGCCGCCGGAGATGAACCTCACGTGACCGTTCTTCAGATCGGATCTTCTG 150
Query 118 TGTTTAACCGTCGACGA-G----TAC-tcttcttcttcttcttcttc--C-TCGT--TCG 166
||| |||||||||| || | | | |||||||||||||||||||| | || | |||
Sbjct 151 TGTGTAACCGTCGAGGAGGACTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCG 210
Query 167 ----CATTGTTCAGTCTTGAAACACTTTAATGGCGACAATGAGCAAAGCTCAAAGGACCA 222
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 211 CTCACATTGTTCAGTCTTGAAACACTCTAATGGCGACAATGAGCAAAGCTCAAAGGACCA 270
Query 223 AACCCACTCCTGGATCTCAGCGTCTTGTTCTGTTATGTATAGTTGTGTTCGCATTCCTCC 282
|||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 271 AACCCACTTCTGGATCTCAGCGTCTTGTTCTGTTCTGTATAGTTGTGTTCTCATTCCTCC 330
Query 283 TCCTGC-TCTCTTCGGTGATCTCCACCGGAAAACTAGGATTGCCGTATCAACAAACCCTA 341
|||| | |||||||||||||||||||||| ||| | |||||||| |||||||||||||||
Sbjct 331 TCCT-CTTCTCTTCGGTGATCTCCACCGGCAAATTGGGATTGCCTTATCAACAAACCCTA 389
Query 342 ATCGATTATTTCGTGTGGTCTCCTCGTGGTAAGAGACAGCATTCATTGTCGGAGAAGTAC 401
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 390 ATCGACTATTTCGTGTGGTCTCCTCGTGGTAAGAGACAGCATTCGTTGTCGGAGAAGTAC 449
Query 402 TTGTATTGGGGAAACAGAATCGATTGTCCTGGCAAAAACTGCGAGACCTGTGCTGGCTTG 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 450 TTGTATTGGGGAAACAGAATCGATTGTCCTGGCAAAAACTGCGAGACCTGTGCTGGCTTG 509
Query 462 GGTCACCAAGAATCTAGCCTCAGGTGTGCACTTGAAGAAGCCATGTTTCTTAACAGGACC 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 GGTCACCAAGAATCTAGCCTCAGGTGTGCACTTGAAGAAGCCATGTTTCTTAACAGGACC 569
Query 522 TTTGTAATGCCTTCTGGAATGTGCATAAATCCAATACATAATAAGAAAGGTATACTCAAT 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 570 TTTGTAATGCCTTCTGGAATGTGCATAAATCCAATACATAATAAGAAAGGTATACTCAAT 629
Query 582 CGATCTGATAACAAAACTACAGAGGAAGGTTGGGTCGGGAGCTCTTGTGCAATGGACTCC 641
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 630 CGATCTGATAACAAAACTACAGAGGAAGGTTGGCTTGGGAGCTCTTGTGCAATGGACTCA 689
Query 642 TTGTATGACATTGACCTCATATCTGAGAAGATACCAGTGATATTAGATGACTCCAAAACA 701
||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||
Sbjct 690 TTGTATGACATTGACCTCATATCTGAGAAGATACCGGTGATATTAGATGACTCTAAGACA 749
Query 702 TGGCATATTGTTCTGTCCACAAGTATGAAGTTGGGAGAAAGAGGGATTGCACATGTTAGT 761
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 750 TGGCATATTGTTCTATCCACAAGTATGAAGTTGGGAGAAAGAGGGATTGCACATGTTAGT 809
Query 762 GGAGTCAGTCGGCATAGGCTAAAAGAGAGTCACTACTCAAATCTCTTGATCATTAACCGA 821
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 810 GGAGTCACTCGGCATAGGCTTAAAGAGAGTCACTACTCAAATCTCTTGATCATTAACCGA 869
Query 822 ACCGCAAGTCCTCTTGCATGGTTCGTTGAGTGCAAAGATAGAAGCAATCGTAGCGCTGTC 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 ACCGCAAGTCCTCTTGCATGGTTCGTTGAGTGCAAAGATAGAAGCAATCGTAGCGCTGTC 929
Query 882 ATGCTTCCTTATTCATTTCTCCCTAATATGGCAGCTGCGAAATTGAGAAACGCCGCCGAA 941
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 930 ATGCTTCCTTATTCATTTCTCCCTAATATGGCAGCTGCAAAATTGAGAAACGCCGCAGAA 989
Query 942 AAGATAAAAGCACAACTTGGTGATTATGATGCCATCCACGTTCGTCGAGGGGACAAACTA 1001
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 990 AAGATAAAAGCACAACTTGGTGATTATGATGCCATCCACGTTCGTCGTGGGGACAAACTG 1049
Query 1002 AAAACCAGAAAAGACAGATTTGGAGTTGAAAGGATTCAATTTCCTCATCTAGACAGAGAT 1061
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1050 AAAACCAGAAAAGACAGATTTGGAGTTGAAAGGATTCAGTTTCCTCATCTAGACAGAGAT 1109
Query 1062 ACGCGCCCTGAGTTTATCCTTCGCAGGATAGAGAAGCGGATCCCACGAGGAAGGACTCTT 1121
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1110 ACGCGCCCTGAGTTTATCCTTCGCAGGATAGAGAAGCGGATCCCAAGAGGAAGGACTCTT 1169
Query 1122 TTTATTGGTTCTAATGAAAGGAAGCCTGGTTTTTTCTCTCCTCTCGCCATCAGGTACAAA 1181
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1170 TTTATTGGTTCTAATGAGAGGAAGCCTGGTTTTTTCTCTCCTCTCGCGGTCAGGTACAAA 1229
Query 1182 CTGGCTTACTCATCGAATTTTAGCGAGATCCTGGATCCTATAATCGAGAATAATTACCAG 1241
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1230 CTGGCTTACTCATCGAACTTTAGCGAGATTCTGGATCCTATAATCGAGAATAATTACCAG 1289
Query 1242 TTATTCATGATGGAGAGACTGGTAATGATGGGAGCCAAAACATACTTCAAAACATTTAAA 1301
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1290 TTATTCATGATGGAGAGACTGGTAATGATGGGAGCCAAAACATACTTCAAAACATTCAAA 1349
Query 1302 GAGTACGAAACAGATCTCACCTTAACTGATGATCCTAAAAAGAACAAGAACTGGGAAATA 1361
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1350 GAGTACGAAACAGATCTCACCTTAACTGATGATCCTAAGAAGAATAAGAACTGGGAAATA 1409
Query 1362 CCAGTGTACACCATGGATGAAAGAAAAGAAGAAGCAAGCTAAAGTTTGTGC--CTTTACA 1419
||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 1410 CCAGTATACACCATGGATGAAAGAAGAGAAGAAGCAAGCTAAAGTTTGTGCGTCTTTACA 1469
Query 1420 AGGTCTCATTGCAACTTAGTCTTGTAACTTCCCACGTTCTTCTAGTCAAATGCTAAATCA 1479
||||||||| || |||||||| | | ||||||||||||| ||||||||||||||||||
Sbjct 1470 AGGTCTCAT---AATTTAGTCTTATGATTTCCCACGTTCTTGTAGTCAAATGCTAAATCA 1526
Query 1480 GTGTATGTAAAAACAAGAGCAGAGTT--A---T--AGAGGTTTTTCATTGGCTT-CCAAA 1531
|||||||||||||||||| ||||||| | | ||||||||||||||||||| ||| |
Sbjct 1527 GTGTATGTAAAAACAAGAACAGAGTTGCAGAGTTTAGAGGTTTTTCATTGGCTTTCCAGA 1586
Query 1532 CGGTTCTTGTGTAAATGGGTTTTGTAAGAACAGATGTAGTAAGATCTGTGTTTTTTGAAG 1591
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1587 GGGCTCTTGTGTAAATGGGTTTTGTAAGAACAGATGTAGTAAAATCTGTGTTTTTTGAAG 1646
Query 1592 TTT 1594
|||
Sbjct 1647 TTT 1649
> AT2G41150.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: leaf; BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56750.1);
Has 127 Blast hits to 127 proteins in 16 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants
- 117; Viruses - 0; Other Eukaryotes - 10 (source: NCBI
BLink). | chr2:17153847-17155982 FORWARD LENGTH=1568
Length=1568
Score = 1074 bits (581), Expect = 0.0
Identities = 1023/1235 (83%), Gaps = 35/1235 (3%)
Strand=Plus/Plus
Query 189 TTAATGGCGACAATGAGCAAAGCTCA-AAGGACCAAACCCACTCCTGGATCTCAGCGTCT 247
||||||||||||||||||||| | || || | ||| ||||||| |||||||| | ||
Sbjct 2 TTAATGGCGACAATGAGCAAACCCCATAA-GTTAAAAGCCACTCCAGGATCTCAAAGACT 60
Query 248 TGTTCTGTTATGTATAGTTG-TGTTCGCATTCCTCCTCCTGCTCTCTTCGGTGATCTCCA 306
|||||||||||||||||| | ||| ||||| |||||||| || |||||||||||||||
Sbjct 61 TGTTCTGTTATGTATAGTCGCAGTT-GCATTTCTCCTCCTTTTCACTTCGGTGATCTCCA 119
Query 307 CCGGAAAACTAGG-ATTGCCGTATC-AACAAACCCTAATCGATTATTTCGTGTGGTCTCC 364
|||| | | || || ||||||| || ||||||||| | |||||| ||| |||| |
Sbjct 120 CCGGCGGA-TTGGCTTTACCGTATCGGAC-AACCCTAATTGGTTATTTTGTGAGGTCAAC 177
Query 365 TCGTGGTAAGAGACAGCATTCATTGTCGGAGAAGTACTTGTATTGGGGAAACAGAATCGA 424
||| |||| ||||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 178 TCGAAACAAGACACAGCATAGTTTGTCGGACAAGTACTTGTACTGGGGAAACAGAATCGA 237
Query 425 TTGTCCTGGCAAAAACTGCGAGACCTGTGCTGGCTTGGGTCACCAAGAATCTAGCCTCAG 484
||||||||| || ||||| ||||||||||| || ||||||||||||||||||||||| ||
Sbjct 238 TTGTCCTGGTAAGAACTGTGAGACCTGTGCCGGTTTGGGTCACCAAGAATCTAGCCTTAG 297
Query 485 GTGTGCACTTGAAGAAGCCATGTTTCTTAACAGGACCTTTGTAATGCCTTCT-GGAATGT 543
||||| |||||||||||||||||||| |||||||| ||||||||||| ||| || ||||
Sbjct 298 ATGTGCCCTTGAAGAAGCCATGTTTCTGAACAGGACTTTTGTAATGCCATCTCGG-ATGT 356
Query 544 GCATAAATCCAATACATAATAAGAAAGGTATACTCAATCGATCTGATAACAAAACTACAG 603
|||| |||||||||||||| ||||| |||||||| |||||||| | || |||||| ||
Sbjct 357 GCATCAATCCAATACATAACAAGAAGGGTATACTTAATCGATCCAACAATGAAACTAGAG 416
Query 604 AGGAAGGTTGGGTCGGGAGCTCTTGTGCAATGGACTCCTTGTATGACATTGACCTCATAT 663
||||| |||||| | |||||||||||||||||| || |||||||| ||||| ||||| |
Sbjct 417 AGGAAAGTTGGGAAGTGAGCTCTTGTGCAATGGAATCATTGTATGATATTGATCTCATCT 476
Query 664 CTGAGAAGATACCAGTGATATTAGATGACTCCAAAACATGGCATATTGTTCTGTCCACAA 723
||||||| ||||| ||||| || |||||||| |||||||||| || | || || || |
Sbjct 477 CTGAGAAAATACCTGTGATCTTGGATGACTCGGAAACATGGCACATAATGCTATCGACGA 536
Query 724 GTATGAAGTTGGGAGAAAGAGGGATTGCACATGT-TAGTGGAGTCAGTC-GGCATAG-GC 780
||||||| ||| |||| | |||| ||| ||||| || ||| | || | ||||| | ||
Sbjct 537 GTATGAAATTGAAAGAACGTGGGAGTGCGCATGTATA-TGG-GGCAAACAGGCAT-GAGC 593
Query 781 TAAAAGAGAGTC-A-CTAC--T-CAAATCTCTTGATCATTAACCGAACCGCAAGTCCTCT 835
| ||| || || | | || | ||||||| ||| ||||||||||||||||||| || ||
Sbjct 594 T-AAA-TGACTCTAGCGACTTTACAAATCTTTTGCTCATTAACCGAACCGCAAGCCCCCT 651
Query 836 TGCATGGTTCGTTGAGTGCAAAGATAGAAGCAATCGTAGCG-CTGTCATGCTTCCTTATT 894
||||||||| ||||| ||||| ||| || | |||||||||| | ||||||||||||||||
Sbjct 652 TGCATGGTTTGTTGAATGCAAGGATCGAGGTAATCGTAGCGAC-GTCATGCTTCCTTATT 710
Query 895 CATTTCTCCCTAATATGGCAGC-TGCGAA-ATTGAGAAACGCCGCCGAAAAGATAAAAGC 952
||||||||| | ||||||||| | | || ||||||| | || || ||||||||||||||
Sbjct 711 CATTTCTCCAGACTATGGCAGCAT-C-AAGATTGAGAGATGCTGCAGAAAAGATAAAAGC 768
Query 953 ACAACTTGGTGATTATGATGCCATCCACGTTCGTCGAGGGGACAAACTAAAAACCAGAAA 1012
| ||||||||||||| ||||| ||||| ||||||||||| |||||||| ||||| |||||
Sbjct 769 AAAACTTGGTGATTACGATGCAATCCATGTTCGTCGAGGTGACAAACTGAAAACAAGAAA 828
Query 1013 AGACAGATTTGGAGTTGAAAGGATTCAATTTCCTCATCTAGACAGAGATACGCGCCCTGA 1072
|||||||||| | || ||||| | || ||||| ||| |||| ||||| || || || ||
Sbjct 829 AGACAGATTTCGCGTGGAAAGAAGCCAGTTTCCACATTTAGATAGAGACACACGGCCAGA 888
Query 1073 GTTTATCCTTCGCAGGATAGAGAAGCGGATCCCACGAGGAAGGACTCTTTTTATTGGTTC 1132
|| ||| || |||| || |||| | ||||||| |||| ||||||||||||| |||||
Sbjct 889 ATTCATCATTGGCAGAATTCAGAAACAAATCCCACCAGGACGGACTCTTTTTATCGGTTC 948
Query 1133 TAATGAAAGGAA-GCCTGGTTT-TTTCTCTCCTCTCGCCATCAGGTACAAACTGGCTTAC 1190
|||||||| ||| |||| ||| ||| || ||||| || ||||| |||||| |||| ||
Sbjct 949 TAATGAAA-GAACCCCTGATTTCTTT-TCACCTCTAGCTATCAGATACAAAGTGGCGTAT 1006
Query 1191 TCATCGAATTTTAGCGAGATCCTGGATCCTATAATCGAGAATAATTACCAGTTATTCATG 1250
|||||||||||||| ||||| ||||||| || |||||||| ||||||||||| ||||||
Sbjct 1007 TCATCGAATTTTAGTGAGATTTTGGATCCGATCATCGAGAACAATTACCAGTTGTTCATG 1066
Query 1251 ATGGAGAGACTGGTAATGATGGGAGCCAAA-ACATACTTCAAAACATTTAAAGAGTACGA 1309
||||||| || |||||||||| | |||| |||| |||||||||||||| |||||||||
Sbjct 1067 GTGGAGAGGTTGATAATGATGGGTG-CAAAGACATTCTTCAAAACATTTAGAGAGTACGA 1125
Query 1310 AACAGATCTCACCTTAACTGATGATCCTAAAAAGAACAAGAACTGGGAAATACCAGTGTA 1369
||| |||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1126 AACCGATCTCACTTTGACTGATGATCCGAAAAAGAACAAGAACTGGGAAATACCAGTTTA 1185
Query 1370 CACCATGGATGAAAGAAAAGAAGAAGCAAGCTAAA 1404
||||||||||||| | ||||||| |||||||||||
Sbjct 1186 CACCATGGATGAAGGCAAAGAAGCAGCAAGCTAAA 1220
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78714454560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5