BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486116 Length=699 Score E Sequences producing significant alignments: (Bits) Value AT3G56770.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 965 0.0 > AT3G56770.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:21029202-21030618 REVERSE LENGTH=693 Length=693 Score = 965 bits (522), Expect = 0.0 Identities = 647/705 (92%), Gaps = 18/705 (3%) Strand=Plus/Plus Query 1 ATGCAAG-CAGAGATTTCAGATCAAATATTCTATTCATTCCTCACCGGAGGATTATGTTC 59 |||| || ||||| |||||||||||||||| ||| | ||||||||||||||||||||| | Sbjct 1 ATGC-AGCCAGAGGTTTCAGATCAAATATTTTATGCCTTCCTCACCGGAGGATTATGTGC 59 Query 60 CTCGTCGACTTCCTCCACCACAACGTCGTTGT-TTTCCTCTTTTGCCATCGAAGACAAGG 118 |||||| |||||| ||||| ||||||| || | || |||||| | | || || Sbjct 60 CTCGTCTACTTCCACCACCGTGACGTCGTCGTCTGACC-CTTTTG-C--C----AC--GG 109 Query 119 TTGCTGAAGACAAAGCTCTTGCTTCTCTGAGGAACCATAAAGAAGCTGAGCGAAAGAGAA 178 || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 110 TTTATGAAGACAAAGCTCTTGCTTCTCTGAGGAACCATAAAGAGGCTGAGCGAAAGAGAA 169 Query 179 GAGAAAAAATCAATTTCCATCTCAACAAGCTCCGCAACTTACTCTCTTGTAACTCCAAGA 238 ||| || |||||||| ||||||||||||||||||||| |||||||||||||||||||||| Sbjct 170 GAGCAAGAATCAATTCCCATCTCAACAAGCTCCGCAAGTTACTCTCTTGTAACTCCAAGA 229 Query 239 CAGACAAAGCCACACTACTAGCTAAAGTGGTTCAACGAGTCAAAGAATTAAAACAACAAA 298 |||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||| Sbjct 230 CAGACAAATCCACACTACTAGCAAAAGTGGTTCAACGAGTCAAAGAACTAAAACAACAAA 289 Query 299 CCCTAGAAATCACCGACGAAACATTACCGTCGGAGACAGACGAAATCAGTGTACTCAACT 358 ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct 290 CCCTAGAAATCACCGACGAAACAATACCGTCGGAGACTGACGAAATCAGTGTACTCAACA 349 Query 359 TTGAAGACTGTTCCA-ATGACGACGGTCGACGGATAATCTTTAAGGTATCGTTTTGCTGC 417 |||| |||||||||| | | ||||| |||||||||||||||||||||||||||||||||| Sbjct 350 TTGAGGACTGTTCCAGA-GGCGACGATCGACGGATAATCTTTAAGGTATCGTTTTGCTGC 408 Query 418 GAGGACAGGCCAGATCTCTTGCAAGATCTCATGGAGACACTCAAATATCTTCAGATGGAA 477 |||||| ||||||| |||||| |||||||||||||||||||||||| ||||||||||||| Sbjct 409 GAGGACCGGCCAGAGCTCTTGAAAGATCTCATGGAGACACTCAAATCTCTTCAGATGGAA 468 Query 478 ACTCTCTTTGCCGAAATGACAACAGTCGGTGGTCGAACAAGAAACGTTCTCGTTGTGGCC 537 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 469 ACTCTCTTTGCCGACATGACAACAGTCGGTGGTCGAACAAGAAACGTTCTCGTTGTGGCC 528 Query 538 GCCGACAAAGAGCATCACGGCGTCCAGTCGGTGAATTTTCTACAGAACGCACTCAAGTCT 597 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 529 GCTGACAAAGAGCATCACGGCGTCCAGTCGGTGAATTTTCTACAGAACGCACTCAAGTCT 588 Query 598 TTGCTTGAACGGTCAAGCAAGTCGGTGATGATGGGACATGGTGGTGGTGG-GG--AAGAA 654 || || |||||||||||||||||||||||| ||||||||||||||||||| || ||||| Sbjct 589 TTACTCGAACGGTCAAGCAAGTCGGTGATGGTGGGACATGGTGGTGGTGGTGGGGAAGAA 648 Query 655 AGGTTAAAACGACGTCGTGCTCTAGATCACATCATAATGGTCTGA 699 |||||||||||||||||||| || ||||||||||||||||||||| Sbjct 649 AGGTTAAAACGACGTCGTGCGCTGGATCACATCATAATGGTCTGA 693 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33857815078 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5