BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486116
Length=699
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56770.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 965 0.0
> AT3G56770.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:21029202-21030618 REVERSE
LENGTH=693
Length=693
Score = 965 bits (522), Expect = 0.0
Identities = 647/705 (92%), Gaps = 18/705 (3%)
Strand=Plus/Plus
Query 1 ATGCAAG-CAGAGATTTCAGATCAAATATTCTATTCATTCCTCACCGGAGGATTATGTTC 59
|||| || ||||| |||||||||||||||| ||| | ||||||||||||||||||||| |
Sbjct 1 ATGC-AGCCAGAGGTTTCAGATCAAATATTTTATGCCTTCCTCACCGGAGGATTATGTGC 59
Query 60 CTCGTCGACTTCCTCCACCACAACGTCGTTGT-TTTCCTCTTTTGCCATCGAAGACAAGG 118
|||||| |||||| ||||| ||||||| || | || |||||| | | || ||
Sbjct 60 CTCGTCTACTTCCACCACCGTGACGTCGTCGTCTGACC-CTTTTG-C--C----AC--GG 109
Query 119 TTGCTGAAGACAAAGCTCTTGCTTCTCTGAGGAACCATAAAGAAGCTGAGCGAAAGAGAA 178
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 110 TTTATGAAGACAAAGCTCTTGCTTCTCTGAGGAACCATAAAGAGGCTGAGCGAAAGAGAA 169
Query 179 GAGAAAAAATCAATTTCCATCTCAACAAGCTCCGCAACTTACTCTCTTGTAACTCCAAGA 238
||| || |||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 170 GAGCAAGAATCAATTCCCATCTCAACAAGCTCCGCAAGTTACTCTCTTGTAACTCCAAGA 229
Query 239 CAGACAAAGCCACACTACTAGCTAAAGTGGTTCAACGAGTCAAAGAATTAAAACAACAAA 298
|||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 230 CAGACAAATCCACACTACTAGCAAAAGTGGTTCAACGAGTCAAAGAACTAAAACAACAAA 289
Query 299 CCCTAGAAATCACCGACGAAACATTACCGTCGGAGACAGACGAAATCAGTGTACTCAACT 358
||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 290 CCCTAGAAATCACCGACGAAACAATACCGTCGGAGACTGACGAAATCAGTGTACTCAACA 349
Query 359 TTGAAGACTGTTCCA-ATGACGACGGTCGACGGATAATCTTTAAGGTATCGTTTTGCTGC 417
|||| |||||||||| | | ||||| ||||||||||||||||||||||||||||||||||
Sbjct 350 TTGAGGACTGTTCCAGA-GGCGACGATCGACGGATAATCTTTAAGGTATCGTTTTGCTGC 408
Query 418 GAGGACAGGCCAGATCTCTTGCAAGATCTCATGGAGACACTCAAATATCTTCAGATGGAA 477
|||||| ||||||| |||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 409 GAGGACCGGCCAGAGCTCTTGAAAGATCTCATGGAGACACTCAAATCTCTTCAGATGGAA 468
Query 478 ACTCTCTTTGCCGAAATGACAACAGTCGGTGGTCGAACAAGAAACGTTCTCGTTGTGGCC 537
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 ACTCTCTTTGCCGACATGACAACAGTCGGTGGTCGAACAAGAAACGTTCTCGTTGTGGCC 528
Query 538 GCCGACAAAGAGCATCACGGCGTCCAGTCGGTGAATTTTCTACAGAACGCACTCAAGTCT 597
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 GCTGACAAAGAGCATCACGGCGTCCAGTCGGTGAATTTTCTACAGAACGCACTCAAGTCT 588
Query 598 TTGCTTGAACGGTCAAGCAAGTCGGTGATGATGGGACATGGTGGTGGTGG-GG--AAGAA 654
|| || |||||||||||||||||||||||| ||||||||||||||||||| || |||||
Sbjct 589 TTACTCGAACGGTCAAGCAAGTCGGTGATGGTGGGACATGGTGGTGGTGGTGGGGAAGAA 648
Query 655 AGGTTAAAACGACGTCGTGCTCTAGATCACATCATAATGGTCTGA 699
|||||||||||||||||||| || |||||||||||||||||||||
Sbjct 649 AGGTTAAAACGACGTCGTGCGCTGGATCACATCATAATGGTCTGA 693
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33857815078
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5