BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486117
Length=1287
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56780.1 | Symbols: | FBD, F-box and Leucine Rich Repeat do... 1858 0.0
> AT3G56780.1 | Symbols: | FBD, F-box and Leucine Rich Repeat
domains containing protein | chr3:21031613-21033202 FORWARD
LENGTH=1296
Length=1296
Score = 1858 bits (1006), Expect = 0.0
Identities = 1208/1303 (93%), Gaps = 23/1303 (2%)
Strand=Plus/Plus
Query 1 ATGACAAAGAAGGTTTGTTCATGTATCAACGAGTTACCCGACGATTTGATCTTGAAGATA 60
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGACAAAGAAGGTTTGTTCATGTATCAACGAGTTGCCCGACGATTTGATCTTGAAGATT 60
Query 61 TTGTCATTCCTTTCTACAAAACATGTTGTAGTGACAAGTCTTTTGTCAAAAGAATGGAAA 120
||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 TTGTCATTCGTTTCTACTAAACATGTTGTAGTGACAAGTCTTTTGTCAAAAAAATGGAAA 120
Query 121 TCTCTATGGACAAGGGTGCCTATACTCAAGTACGATGTTCGGGATCACACTAGATTCTTT 180
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 TCTCTTTGGACAAGGGTGCCTATACTCAAGTACGATGTTCGGGATCACACTAGA---TTT 177
Query 181 GAACGATTTCTCGACAAGTCACTGTTGTCACACCAATCTCATGTTCTAGAAAGCCTTCAT 240
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 178 GAACGATTTCTCGACAAGTCTCTGTTCTCACACCAATCTCATGTTCTAGAAAGCCTTCAT 237
Query 241 GTCAAATTAAGTGTGACCCTGTGGAATAAAGACATTGGACCATGGATTAGTACCGCGCTT 300
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 238 GTCGAATTAAGTGTGACCCTGTGGAATAAAGACATTGGACCATGGATTAGAACCGCGCTT 297
Query 301 CGTCATCATCATTGCCACCTCCGTGAGCTCGAGATAGATGCTTGTATTGTCCATACCTTA 360
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 298 CATCATCATCATTGCCACCTCCGTGAGCTAGAGATAGATGCTTGTATTGTCCATACCGTA 357
Query 361 TTACCTCCTGAATTGTTTACCTGCGAAACACTTGTTGTCTTGAAACTCAAAGGTATAGTG 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 358 TTACCTCCTGAATTGTTTACCTGCAAAACACTTGTTGTCTTGAAACTCAAAGGTATAGTG 417
Query 421 ATTGATGTGGAAGCTCCTCTGACAACGGTCTGTCTCCCATCCCTAAAAACTCTGCACATT 480
|| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 418 ATCGATGTGGAAGCTCCTCTTACAACGGTCTCTCTCCCATCCCTAAAAACTCTGCACATT 477
Query 481 GACCACTCGAGTTTATTCGACTTTG-AGTCCCTTCAAATGCTTTTATCCAGTTGCAATTT 539
||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||
Sbjct 478 GACCACTCGAGTTTATTCGACTTTGGA-TCCCTTCAAATGCTTTTATCCAATTGCAATTT 536
Query 540 TCTTACAGACCTAATGGTCACAAGGGAATCTAGATTCTTTTTTGCTGAGTTCGACGTTTC 599
| |||| ||||||||||||| ||| |||||| | |||||||||||||||| |||||||||
Sbjct 537 TATTACTGACCTAATGGTCATAAGAGAATCTCGTTTCTTTTTTGCTGAGTACGACGTTTC 596
Query 600 TTGGTGTAAAACACTTGTGGCCTTGAAACTCGAAGGCTTGAAGGATGTGATAAGCATTTA 659
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TTGGTGTAAAACACTTATGGCCTTGAAACTCGAAGGCTTGAAGGATGTGATAAGCATTTC 656
Query 660 TTCTTC--C-GCGGTATGTCTCCCATTCCTCAAAACTCTGCATGTTGCCCGCATGGTGGA 716
|||||| | ||||||||||||||| ||||||||||||| |||||||||||||||| |||
Sbjct 657 TTCTTCTTCCGCGGTATGTCTCCCACTCCTCAAAACTCTCCATGTTGCCCGCATGGAGGA 716
Query 717 CTTTAGCAATGATTCCTTTTGTCGGCTTTTATCCAAATGCCCTGTTCTTTCTGACCTAGC 776
||||| |||||||||||||||||||||||||||||| ||||||||||| || |||||| |
Sbjct 717 CTTTAACAATGATTCCTTTTGTCGGCTTTTATCCAATTGCCCTGTTCTCTCCGACCTAAC 776
Query 777 ATTGGAAGAAAAAACCAGTGATGTTTTGCTGAATTTGGATATCGACATGCCTTACTTACA 836
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 777 ACTGGAAGAAAAAACCAGTGATGTTTTGTTGAATTTGGATATCGACATGCCTTACTTACA 836
Query 837 AAGATTGTCGATTATAACGATAGTCGATG-A--TCCCAAGCAT-TTGTGTAGTTT-ACTG 891
||||||||||||||| || | |||||||| | | |||||||| || | |||||| | ||
Sbjct 837 AAGATTGTCGATTATCACAAGAGTCGATGCAGATTCCAAGCATATTTT-TAGTTTGA-TG 894
Query 892 ACAAATTACACTCGAAAGCTTGCGATTATCGCACCTTCTTTCAAGTTCTTCAACATTCAA 951
| ||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 895 AAAAACTACACTCGAAAGCTTGCGATTATCGCACCTTCTTTCAAGTACTTCAGCATTCAA 954
Query 952 GAGTTGGTGTATGCCGGC--T-ACCAGTATATTGTGA-GAGTTAGACTCGGAGTTCCAAC 1007
||||||| ||||| || | ||| ||||||||| | | ||||| |||||||||||| |
Sbjct 955 GAGTTGGCATATGCAAGCCGTTACCGGTATATTGT-ACGGGTTAGGCTCGGAGTTCCATC 1013
Query 1008 AC--T-AGAGGATGCAAATATCTTCCGTCGAATAGTACATCTGGAGCTGAGCATATGTAG 1064
| | ||||||||||| || |||| ||||||| || |||||||||||||||||||||||
Sbjct 1014 AAAATTAGAGGATGCAAGTACCTTCAGTCGAATCGTGCATCTGGAGCTGAGCATATGTAG 1073
Query 1065 TGAAAGATATGGGGGAATGCTTGTAGATTTGCTCCTATGTTTCATTAAATTGGTGGTTCT 1124
|||||||| || || ||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1074 TGAAAGATCTGTGGAAATGCTTGTAGATTTGCTCCTATGTTTCACTAAATTGGTGGTCCT 1133
Query 1125 CAAGCTTGAAAATGTTTACTTACTAACTCCGTTGGGTCGTTGGGAACCGCCAAGTTTGGT 1184
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1134 CAAGCTTGAACATGTTTACTTACTAACCCCGTTGGGTCGTTGGGAACCGCCAAGTTTGGT 1193
Query 1185 TCCTGAATGTTTGTTGTCCAGTCTTGAAGCTCTAGAGTGGAAAGGTTACACAGGGAGATA 1244
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1194 TCCCGAATGTTTGTTGTCCAGTCTTGAAGCTCTAGAGTGGAAAGGGTACACAGGGAGATA 1253
Query 1245 CGGAGATAAGGATGTGGGAAGCAACAAATTGAAGAGGACTTAG 1287
||||||||||||| || ||||||||| ||||||||||||||||
Sbjct 1254 CGGAGATAAGGATCTGCGAAGCAACAGATTGAAGAGGACTTAG 1296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63302887245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5