BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486117 Length=1287 Score E Sequences producing significant alignments: (Bits) Value AT3G56780.1 | Symbols: | FBD, F-box and Leucine Rich Repeat do... 1858 0.0 > AT3G56780.1 | Symbols: | FBD, F-box and Leucine Rich Repeat domains containing protein | chr3:21031613-21033202 FORWARD LENGTH=1296 Length=1296 Score = 1858 bits (1006), Expect = 0.0 Identities = 1208/1303 (93%), Gaps = 23/1303 (2%) Strand=Plus/Plus Query 1 ATGACAAAGAAGGTTTGTTCATGTATCAACGAGTTACCCGACGATTTGATCTTGAAGATA 60 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1 ATGACAAAGAAGGTTTGTTCATGTATCAACGAGTTGCCCGACGATTTGATCTTGAAGATT 60 Query 61 TTGTCATTCCTTTCTACAAAACATGTTGTAGTGACAAGTCTTTTGTCAAAAGAATGGAAA 120 ||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct 61 TTGTCATTCGTTTCTACTAAACATGTTGTAGTGACAAGTCTTTTGTCAAAAAAATGGAAA 120 Query 121 TCTCTATGGACAAGGGTGCCTATACTCAAGTACGATGTTCGGGATCACACTAGATTCTTT 180 ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 121 TCTCTTTGGACAAGGGTGCCTATACTCAAGTACGATGTTCGGGATCACACTAGA---TTT 177 Query 181 GAACGATTTCTCGACAAGTCACTGTTGTCACACCAATCTCATGTTCTAGAAAGCCTTCAT 240 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 178 GAACGATTTCTCGACAAGTCTCTGTTCTCACACCAATCTCATGTTCTAGAAAGCCTTCAT 237 Query 241 GTCAAATTAAGTGTGACCCTGTGGAATAAAGACATTGGACCATGGATTAGTACCGCGCTT 300 ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 238 GTCGAATTAAGTGTGACCCTGTGGAATAAAGACATTGGACCATGGATTAGAACCGCGCTT 297 Query 301 CGTCATCATCATTGCCACCTCCGTGAGCTCGAGATAGATGCTTGTATTGTCCATACCTTA 360 | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || Sbjct 298 CATCATCATCATTGCCACCTCCGTGAGCTAGAGATAGATGCTTGTATTGTCCATACCGTA 357 Query 361 TTACCTCCTGAATTGTTTACCTGCGAAACACTTGTTGTCTTGAAACTCAAAGGTATAGTG 420 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 358 TTACCTCCTGAATTGTTTACCTGCAAAACACTTGTTGTCTTGAAACTCAAAGGTATAGTG 417 Query 421 ATTGATGTGGAAGCTCCTCTGACAACGGTCTGTCTCCCATCCCTAAAAACTCTGCACATT 480 || ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| Sbjct 418 ATCGATGTGGAAGCTCCTCTTACAACGGTCTCTCTCCCATCCCTAAAAACTCTGCACATT 477 Query 481 GACCACTCGAGTTTATTCGACTTTG-AGTCCCTTCAAATGCTTTTATCCAGTTGCAATTT 539 ||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||| Sbjct 478 GACCACTCGAGTTTATTCGACTTTGGA-TCCCTTCAAATGCTTTTATCCAATTGCAATTT 536 Query 540 TCTTACAGACCTAATGGTCACAAGGGAATCTAGATTCTTTTTTGCTGAGTTCGACGTTTC 599 | |||| ||||||||||||| ||| |||||| | |||||||||||||||| ||||||||| Sbjct 537 TATTACTGACCTAATGGTCATAAGAGAATCTCGTTTCTTTTTTGCTGAGTACGACGTTTC 596 Query 600 TTGGTGTAAAACACTTGTGGCCTTGAAACTCGAAGGCTTGAAGGATGTGATAAGCATTTA 659 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 597 TTGGTGTAAAACACTTATGGCCTTGAAACTCGAAGGCTTGAAGGATGTGATAAGCATTTC 656 Query 660 TTCTTC--C-GCGGTATGTCTCCCATTCCTCAAAACTCTGCATGTTGCCCGCATGGTGGA 716 |||||| | ||||||||||||||| ||||||||||||| |||||||||||||||| ||| Sbjct 657 TTCTTCTTCCGCGGTATGTCTCCCACTCCTCAAAACTCTCCATGTTGCCCGCATGGAGGA 716 Query 717 CTTTAGCAATGATTCCTTTTGTCGGCTTTTATCCAAATGCCCTGTTCTTTCTGACCTAGC 776 ||||| |||||||||||||||||||||||||||||| ||||||||||| || |||||| | Sbjct 717 CTTTAACAATGATTCCTTTTGTCGGCTTTTATCCAATTGCCCTGTTCTCTCCGACCTAAC 776 Query 777 ATTGGAAGAAAAAACCAGTGATGTTTTGCTGAATTTGGATATCGACATGCCTTACTTACA 836 | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 777 ACTGGAAGAAAAAACCAGTGATGTTTTGTTGAATTTGGATATCGACATGCCTTACTTACA 836 Query 837 AAGATTGTCGATTATAACGATAGTCGATG-A--TCCCAAGCAT-TTGTGTAGTTT-ACTG 891 ||||||||||||||| || | |||||||| | | |||||||| || | |||||| | || Sbjct 837 AAGATTGTCGATTATCACAAGAGTCGATGCAGATTCCAAGCATATTTT-TAGTTTGA-TG 894 Query 892 ACAAATTACACTCGAAAGCTTGCGATTATCGCACCTTCTTTCAAGTTCTTCAACATTCAA 951 | ||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 895 AAAAACTACACTCGAAAGCTTGCGATTATCGCACCTTCTTTCAAGTACTTCAGCATTCAA 954 Query 952 GAGTTGGTGTATGCCGGC--T-ACCAGTATATTGTGA-GAGTTAGACTCGGAGTTCCAAC 1007 ||||||| ||||| || | ||| ||||||||| | | ||||| |||||||||||| | Sbjct 955 GAGTTGGCATATGCAAGCCGTTACCGGTATATTGT-ACGGGTTAGGCTCGGAGTTCCATC 1013 Query 1008 AC--T-AGAGGATGCAAATATCTTCCGTCGAATAGTACATCTGGAGCTGAGCATATGTAG 1064 | | ||||||||||| || |||| ||||||| || ||||||||||||||||||||||| Sbjct 1014 AAAATTAGAGGATGCAAGTACCTTCAGTCGAATCGTGCATCTGGAGCTGAGCATATGTAG 1073 Query 1065 TGAAAGATATGGGGGAATGCTTGTAGATTTGCTCCTATGTTTCATTAAATTGGTGGTTCT 1124 |||||||| || || ||||||||||||||||||||||||||||| |||||||||||| || Sbjct 1074 TGAAAGATCTGTGGAAATGCTTGTAGATTTGCTCCTATGTTTCACTAAATTGGTGGTCCT 1133 Query 1125 CAAGCTTGAAAATGTTTACTTACTAACTCCGTTGGGTCGTTGGGAACCGCCAAGTTTGGT 1184 |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1134 CAAGCTTGAACATGTTTACTTACTAACCCCGTTGGGTCGTTGGGAACCGCCAAGTTTGGT 1193 Query 1185 TCCTGAATGTTTGTTGTCCAGTCTTGAAGCTCTAGAGTGGAAAGGTTACACAGGGAGATA 1244 ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1194 TCCCGAATGTTTGTTGTCCAGTCTTGAAGCTCTAGAGTGGAAAGGGTACACAGGGAGATA 1253 Query 1245 CGGAGATAAGGATGTGGGAAGCAACAAATTGAAGAGGACTTAG 1287 ||||||||||||| || ||||||||| |||||||||||||||| Sbjct 1254 CGGAGATAAGGATCTGCGAAGCAACAGATTGAAGAGGACTTAG 1296 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63302887245 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5