BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486119
Length=1121
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56810.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1760 0.0
> AT3G56810.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 14 Blast hits to
14 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr3:21036760-21038947 REVERSE
LENGTH=1186
Length=1186
Score = 1760 bits (953), Expect = 0.0
Identities = 1073/1130 (95%), Gaps = 11/1130 (1%)
Strand=Plus/Plus
Query 1 GGAATATGAAGAAGAGTAAACGAGAGAACTTGCTTTCTCCTTCATCTTCATGGCGGGAAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 16 GGAATATGAAGAAGAGTAAACGAGAGAACTTGCTTTCTCCTTCATCTTCATGGCGGGAAA 75
Query 61 ACCATAATCCTCCCCGGA-AAGATTCAAACTCCTCCGCCGTCTCCTCCGGCTGCCTCCCC 119
||||||||||||| |||| || | ||||||||||||||||||||||||||||||||||||
Sbjct 76 ACCATAATCCTCCACGGAGAA-ACTCAAACTCCTCCGCCGTCTCCTCCGGCTGCCTCCCC 134
Query 120 GGATTCTTCAACCTCTTCCTCTCTACCTCCAACCGCCGCAAATCCATCACCTTGGGATCT 179
|| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 135 GGGTTCTTCAACCTCTTCCTCTCCACCTTCAACCGCCGCAAATCCATCACCTTGGGATCT 194
Query 180 AAAAAGCGAGAACAAAAAACCGTCGTTTACGCTTCTCCTCCGCAAGATTCATCAAACGGA 239
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 AAAAAGCGAGAACAAAGAACCGTCGTTTACGCTTCTCCTCCGCAAGATTCATCAAACGGA 254
Query 240 GAAGGCGGAGGAATCGTTGCGCCACCGCTTCCGCGCAATGAAGGAGATGGAGATGCGGCG 299
||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 255 CAAGGCGGAGGAATCGTTGCGCCACCGCTTCCGCACAATGAAGGAGAGGGAGATGCGGCG 314
Query 300 AGGGTGAGCCTAGTCGGAGCACTAGAGAAATGTGATCGGGACTTAGAGGAGCTAAGGAGA 359
|| || || ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 315 AGAGTTAGTCTAGTCGGAGCACTAGAGAAATGTGATCGGGACTTAGAGGAGCTAAGAAGA 374
Query 360 ACCATCGACGTCATCAAAACCACTTACATTCTTCACAAGAAACTTGAGGTTTCTCCGCCG 419
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 375 ACCATCGACGTCATCAAAACCACTTACATTCTTCACAAGAGACTTGAGGTTTCTCCGCCG 434
Query 420 ACAACACGTGAGAATTTTAAATTCTCCGGCACCGTACTGGCAGGAGATGTCGTCGTGGGG 479
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 ACCACACGTGAGAATTTTAAATTCTCCGGCACCGTACTGGCAGGAGATGTCGTCGTGGGG 494
Query 480 ACGCAAACGCAAAAGAACACGAAGACGACACAACACGAACCAGATACAGCCACGATGTTG 539
||||| ||||| |||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 495 ACGCACACGCAGAAGAACACGAAGACGACACAACACGAACCAGACACAGACACGATGTTG 554
Query 540 TCGATGATGAACCATCACGAGTA---CTGCAAAGACATCAAACCCTACAAAGTCAACAAC 596
|||||||||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 555 TCGATGATGAACCATCACGAATATTGCTGCAAAGACAACAAACCCTACAAAGTCAACAAT 614
Query 597 ATAAATCTAATCACCAGACCCGATCATTACGCCATTCATGACGTCATTTCCAAGAGAGCA 656
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 615 ATAAATCTAATCACTAGACCCGATCATTACTCCATTCATGACGTCATTTCCAAGAGATCA 674
Query 657 ACGTCAACGACGACAACAGAGTCATGTGGCACGTTGCCCCTTGTGGTGCGGAGGGTAAGA 716
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 ACGTCAACGACGACGACAGAGTCATGTGGCACGTTGCCCCTTGTGGTGCGGAGGGTAAGA 734
Query 717 CGGAGCTTGATGGAGAGCGTGAACCAGGTTTGTGATGATGTGGCATCTGGTCAACGAAGA 776
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 735 CGGAGCTTGATGGAGAGCGTGAACCAAGTTTGTGATGACGTGGCATCTGGTCAACGAAGA 794
Query 777 GAGGTCGCTAAAATCGGTTTGGCTCTTCATGATCACATCTGTCGCGACTTGATCGCAGAG 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 GAGGTCGCTAAAATCGGTTTGGCTCTTCATGATCACATCTGTCGCGACTTGATCGCAGAG 854
Query 837 ACCGTTCGAGAGCTCTCCTTCTCCGACTACGATGACGACGAGTTTTATAAATCGCCGGTA 896
||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||
Sbjct 855 ACCGTTCGAGAGCTCTCCTTCTCTGACTACGACGACGACGAGTTTTATCAATCGCCGGTG 914
Query 897 GATTCTTCTGTTT-TTAACGGTGGAGGAGGTAAACGCCGACACATCCGACGTGGTAGCAG 955
||||||||||||| ||| ||| |||||||||||| ||| ||||||||||||||| |||||
Sbjct 915 GATTCTTCTGTTTGTTA-CGGCGGAGGAGGTAAAGGCCAACACATCCGACGTGGCAGCAG 973
Query 956 CAACTCTCTCCCACTCGACGCGTGTCGAAGAAGATTAGTGTTTTGATGTGATTGATCTCT 1015
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 974 CAACTCTCTCCCATTCGACGCGTGTCGAAGAAGATTAGTGTTTTGATGCGATTGATATCT 1033
Query 1016 T-AGGTTCTTTGTGACGGATATGGAAGTCATAGTTGCGACAGTTTTCACCTATGACACTT 1074
| |||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1034 TTAGGTTCGTTGTGACGGTTATGGAAGTCATAGTTGCGACAATTTTCACCTATGACACTT 1093
Query 1075 GTT-T--AATTTACTTTATTATTTTCTTAGCTTATTAAGAATTTAAGACA 1121
||| | || ||| ||||| |||||||||||||||| |||||||||||||
Sbjct 1094 GTTGTTTAAATTATTTTATAATTTTCTTAGCTTATTCAGAATTTAAGACA 1143
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54969596775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5