BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486120
Length=915
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56820.1 | Symbols: | unknown protein; Has 34 Blast hits to... 1354 0.0
> AT3G56820.1 | Symbols: | unknown protein; Has 34 Blast hits
to 34 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes
- 7 (source: NCBI BLink). | chr3:21039803-21041760 REVERSE
LENGTH=970
Length=970
Score = 1354 bits (733), Expect = 0.0
Identities = 862/923 (93%), Gaps = 13/923 (1%)
Strand=Plus/Plus
Query 1 GAAAATGGCAAACCCTAGAAGAGTAGTGATCGATAACCAGAGATTGTCACCTATAATCAA 60
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 46 GAAAATGGCAAACCCTAGAAGAGTAGTGATCGAGAACCAGAGATTGTCACCTTTAATCAA 105
Query 61 CCTACTGAAGAAGCCTCAAGCGTTTCCTATTCTCCTCTCGTTCTTCCTCTTCCTCACATG 120
|||||||||||||||||||||| ||||| | || |||||||| |||||||| ||||||||
Sbjct 106 CCTACTGAAGAAGCCTCAAGCGATTCCTCTGCTTCTCTCGTTGTTCCTCTTGCTCACATG 165
Query 121 GATCTCCCTCAGGTTACAGCACTCTT--C--T--CACGTCTCTTCGTCCTCTTCACATCC 174
|||||||||||||||||| ||||||| | | ||||||||||||||||||||||||||
Sbjct 166 GATCTCCCTCAGGTTACAACACTCTTCACAATCACACGTCTCTTCGTCCTCTTCACATCC 225
Query 175 AAAATCGACGCTAAATAGTCATCCCGATTTGAAAGTCTT-CGACGACGACGATAAGGTTA 233
||||||||| ||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 226 GAAATCGACGGTAAATAGTCATCCCGATTTGAAAGT-TTACGACGACGACGATAAGGCTA 284
Query 234 ATCTAGTCCGGTTCGGTTTGGCGTCGCTTTCTCCTGTTCGGAAAGACGATCGTGGATGGT 293
|| | ||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||
Sbjct 285 ATTTGGTCCGGTTCGGTTTGGCGTCGCTTTCTCCTGCTCGGAAAGACGACCGTGGTTGGT 344
Query 294 TGCTTGATCCCGTTATACTTGCTCGTGATTCTCAGCTCAAAGGTGGAGCCGCCTCGTGTG 353
|||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 345 TGCTTGATCCCGTTATCCTTGCTCGTGATTCTGAGCTCAAAGGTGGAGCCGCATCGTGTG 404
Query 354 TTTCCATTCATGTTGGTGAAATACGGCCTGGTGGATTGAGGGGAAATCATAGACACCATA 413
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 405 TTTCCATTCATGTTGGTGAAATACGGCCTGGTGGATTGAGGGGAAACCATAGACACCATA 464
Query 414 CCTGTAATGAGACGTTTGTCATATGGGGAGCTAAGACAAGATTCAGGCTGGAAAACCACG 473
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 465 CCTGTAATGAGACGTTTGTCATATGGGGAGCCAAGACAAAATTCAGGCTGGAAAACCACG 524
Query 474 AAGTCGATAAAGGTTACGCCGAAGTGTTAATTGGAGAGGATGAAGTAGCTGTAGCAGTTA 533
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 525 AAGTCGATAAAGGTTACGCCGAAGTGTTAATTGGAGAGGATGAGGTAGCTGTAGCTGTTA 584
Query 534 GTCCGAGTGGCACGGCTCATGCTCTAGTAAATGTTGATCCTGTGCGTTCTACTTTCTTCA 593
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 585 GTCAGAGTGGCACGGCTCATGCTCTAGTAAATGTAGATCCTGTGCGTTCTACTTTCTTCA 644
Query 594 TAGGATGCCAAGACTATATACAGAACAACAGCTCAAATAGCGACTACAAAGTATGGAACG 653
|||| ||||||||| |||| |||||||||||||||| ||||||||||||||||||||| |
Sbjct 645 TAGGCTGCCAAGACCATATGCAGAACAACAGCTCAACTAGCGACTACAAAGTATGGAATG 704
Query 654 ATCTATAAACCAAAGTGGGTTAGTTTAGTTTCTCTCAATCGTTCAGATTTTCATTGGCTT 713
||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||
Sbjct 705 ATCTATAAACCAAAGTGGGTTAGTTTAGTTTCTCTTGTTCATTCAAATTTTCATTGGCTT 764
Query 714 TTCTTTCTTTTCGAGCTCTTATTTGTATAGAATAGGCTTTGTTATT-ACTTGTCAGTTAT 772
|||||||||| ||||| |||||||||||||| ||||||||||| || ||| |||||| ||
Sbjct 765 TTCTTTCTTT-CGAGCCCTTATTTGTATAGAGTAGGCTTTGTT-TTGACTGGTCAGTCAT 822
Query 773 ATTGTTACTGAGATTATAAAACTGAAACTTCCAATGTTTAGTGTTCATTGATATGATGAT 832
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
Sbjct 823 ATTGTTACTGAGATTATAAACCTGAAACTTCCAATGTT--GTGTTCATTGATATGATGGT 880
Query 833 AAGATTAGTCTGATCAGTGAGAATCAATTCGTATGTATAGTTTGTTGTTTCTTCACAGTT 892
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 881 AAGATTAGTCTGATCAGTGAGAATCAATTCGTATGTAGAGTTTGTTGTTTCTTCACAGCT 940
Query 893 GAATTTGCAATGCAAGTATTTCT 915
|||| ||||||||| || |||||
Sbjct 941 GAATGTGCAATGCATGTCTTTCT 963
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44708390830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5