BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486123
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56830.1 | Symbols: | Protein of unknown function (DUF565) ... 977 0.0
> AT3G56830.1 | Symbols: | Protein of unknown function (DUF565)
| chr3:21042445-21044318 REVERSE LENGTH=1481
Length=1481
Score = 977 bits (529), Expect = 0.0
Identities = 587/615 (95%), Gaps = 4/615 (1%)
Strand=Plus/Plus
Query 68 AGGAATTAGTTACATCTGGGTCAGAAGACCAACATTTCTTCTAGCTGTTTCATGGGATTT 127
||||| ||| | |||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 428 AGGAAGTAGCTGCATCTGGGTCGGAAGACCAACATTTATTCTAGCTGTTTCATGGGATTT 487
Query 128 GCCATCACGGTGACATTACCTAAGTGTGGAAGTAAGTTCTTGCC-AAAGAGGAGTCTCAG 186
||||||||||||||||||||||| |||||||||||||||||||| ||| |||||| ||||
Sbjct 488 GCCATCACGGTGACATTACCTAATTGTGGAAGTAAGTTCTTGCCTAAA-AGGAGTTTCAG 546
Query 187 AGACAAAGGTGCTTTGTCTCTTGCCATTTGTTCCCTCTGTCATTT-CTTGCATCCTGCAC 245
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 547 AGACAAAGGTGCTTTGTCTCTTGCCATTTGTTCCCTCTGTCATTTCCTT-CATCCTGCAC 605
Query 246 AGCCTCTGTTGGTTAGACATCAAAGGAGGATGTCGTGGACAACAATTAGAAGCTCGGTTG 305
||||||||||||| |||||||||||||||||||| |||||||| || | |||||||||||
Sbjct 606 AGCCTCTGTTGGTCAGACATCAAAGGAGGATGTCATGGACAACTATCAAAAGCTCGGTTG 665
Query 306 GTGGGGACAGATTTGATCCAGCATCCGGTTCTTCAAGTAATAATAGCTCCAGAGGTCTAC 365
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 666 GTGGGGACAGATTCGATCCAGCATCTGGTTCTTCAAGTAATAATAGCTCCAGAGGTCTAC 725
Query 366 GGCTAATCAAAGCCTTACAAGTTCTCAGAACTAAGCTTCTGGTGAAATTTCAGGAGATAA 425
|||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 726 GGCTAATCAAAGCCATACAAGTTCTCAGAAGTAAGCTTCTGGTGAAAATTCAGGAGATAA 785
Query 426 AGAAAGATCTCCCCAAGAAACTGTTCTTTCTGTTGGTGGGATTCTACTCTGCAACTGCTT 485
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 786 AGAAAGATCTCCCCAAGAAACTGTTCTTTCTCTTGGTGGGATTCTACTCTGCAACTGCTT 845
Query 486 TCTCTACATTCATAGGACAAACAGGAGACTGGGATGTTCTGTCTGCTGGATTGGCTGTGC 545
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 846 TCTCTACATTCATAGGACAAACAGGAGACTGGGATGTTCTATCTGCTGGATTGGCTGTGC 905
Query 546 TTGTAGTTGAATGCATTGGAGCTTTAATGTACAGAGCCTCTGTTCCATTAATCAACAAGA 605
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 906 TTGTAGTTGAATGCATTGGAGCTTTAATGTACAGAGCTTCTATTCCATTAATCAACAAGA 965
Query 606 TGCGGGGCACGATCACTATGTTTAACTATTGGAAGACTGGACTCGCCCTCGGACTGTTCC 665
||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 966 TGCGGAGCACGATCACCATGTTTAACTATTGGAAGACTGGACTCGCCCTGGGACTGTTCC 1025
Query 666 TAGACTCATTCAAGT 680
|||||||||||||||
Sbjct 1026 TAGACTCATTCAAGT 1040
Score = 237 bits (128), Expect = 1e-61
Identities = 168/187 (90%), Gaps = 4/187 (2%)
Strand=Plus/Plus
Query 679 GTTTTAGCTTGGACCTCGTAAGAAAGACCGCGAAACCTGGCTCAAGAATGGACATTTATC 738
|||||||||||||||||| | |||| | ||| ||||||||||||||||||| | | ||
Sbjct 1139 GTTTTAGCTTGGACCTCG-GA-AAAGGCAGCGTAACCTGGCTCAAGAATGGAGAGTGGTC 1196
Query 739 AGCAAAATTTTGACATGCTGTGTCCCCTTTATGCCTGAAACCAATACATGAGGCTTGTGA 798
|||||| |||||| | ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1197 AGCAAATTTTTGAAAAGCTGTGTCCCCTTTATGCCTGAAACCAATACATGAGGGTTGTGA 1256
Query 799 AGACTTTAACGTTC-ATTGAAGACAAAGCTTAGGTTTCAGCGTTTCAAATCACAAGCTAG 857
|||||||||||||| || ||||||||| |||| ||||||||||||||||||||||| |||
Sbjct 1257 AGACTTTAACGTTCGAT-GAAGACAAATCTTATGTTTCAGCGTTTCAAATCACAAGGTAG 1315
Query 858 AAGACAT 864
|||||||
Sbjct 1316 AAGACAT 1322
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42146449333
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5