BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486125
Length=2242
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A | chr... 2292 0.0
AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 702 0.0
> AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A | chr3:21048745-21052286
REVERSE LENGTH=2614
Length=2614
Score = 2292 bits (1241), Expect = 0.0
Identities = 1495/1611 (93%), Gaps = 43/1611 (3%)
Strand=Plus/Plus
Query 1 GGGAAAAATCAGCTTTTTGGAGAAGAAACCAAAGAAATAAACATTCGAAACCCTAAAACT 60
||| |||||||||||||||||||||||||||||| | |||||||||||||||||||| |
Sbjct 69 GGGGAAAATCAGCTTTTTGGAGAAGAAACCAAAG--A-AAACATTCGAAACCCTAAAA-T 124
Query 61 C-CCATTAGAATTCGACAATGACAAAGAAGAGAAAGCTCGAA-G-G-AGAATCTAACGAA 116
| |||||||||||||| ||||||||||||||||||||||||| | | |||||||||||||
Sbjct 125 CTCCATTAGAATTCGAAAATGACAAAGAAGAGAAAGCTCGAAGGAGAAGAATCTAACGAA 184
Query 117 GCGGAAGAACCGTCGCAGAAGCTGAAGCAGACGCCGGAGGAGGAGCAGCAGCAGCTCGTT 176
|| |||||||||||||||||||||||||||||||||||||| | | |||||||||| ||
Sbjct 185 GCTGAAGAACCGTCGCAGAAGCTGAAGCAGACGCCGGAGGA-G-G-AGCAGCAGCTTGTA 241
Query 177 ATT-AAAA-C-------TCAAGCAGACGTCgaagaagttgaatacgaggaagtagaggaa 227
||| |||| | ||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 242 ATTAAAAATCAGGATAATCAAGGAGACGTTGAAGAAGTTGAATACGAGGAAGTAGAGGAA 301
Query 228 gagcaagaagaagaagtagaagatgatgacgaagaCGACGATGACGATGGCG-ATGATAA 286
|||||||||||||||||||||||||||||||| || || |||| ||| | | |||| |
Sbjct 302 GAGCAAGAAGAAGAAGTAGAAGATGATGACGATGAAGATGATGGTGAT-GAGAATGAGGA 360
Query 287 TCAGACGGCTGCTAATCGTATTGAGGCGGCGGCGACGTCTGGATCTGGGAATCAAGGGGA 346
|||||||| || |||||||| |||||||||||||||||||||||||| |||| | |
Sbjct 361 TCAGACGGATGGGAATCGTATAGAGGCGGCGGCGACGTCTGGATCTGGCAATC-A----A 415
Query 347 TGTAAATGATGATGATGACGATGAGCCAATTCAGGATCTGTTGGAACCGTTTTCAAAGGA 406
| | | |||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 416 -G---A--A-GATGATGACGATGAACCAATTCAGGATCTGTTGGAACCATTTTCAAAGGA 468
Query 407 ACAACTTTTGAGTCTTCTTAAAGAAGCAGCGGAGAAGCATCTTGATGTAGCCAATCGAAT 466
||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 469 GCAAGTTTTGAGTCTTCTTAAGGAAGCAGCGGAGAAGCATGTTGATGTAGCCAATCGAAT 528
Query 467 CCGGGAAGTAGCTGATGAGGACCCTGTTCACCGGAAGATCTTCGTGCACGGTCTTGGTTG 526
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 529 TAGGGAAGTAGCTGATGAGGACCCTGTTCATCGGAAGATCTTTGTGCACGGTCTTGGTTG 588
Query 527 GGATACCAAAACAGAGACGCTTATCGAAGCTTTTAAGCAGTACGGAGAGATCGAAGATTG 586
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 589 GGATACGAAAACAGAGACGCTTATTGAAGCTTTTAAGCAGTACGGAGAGATCGAAGATTG 648
Query 587 CAAGGCTGTGTTTGATAAGATCTCAGGGAAATCTAAAGGTTATGGCTTTATTTTGTTCAA 646
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 649 CAAGGCTGTGTTTGATAAGATCTCAGGGAAATCTAAAGGTTATGGCTTTATTCTGTACAA 708
Query 647 GTCTCGGTCAGGTGCTCGCAATGCACTTAAGCAGCCTCAGAAGAAGATTGGTAGTCGTAT 706
|||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 709 GTCTCGTTCAGGTGCTCGCAACGCACTCAAGCAGCCTCAGAAGAAGATTGGTAGTCGTAT 768
Query 707 GACGGCATGTCAATTGGCTTCTAAAGGACCTGTCTTTGGTGGAGCTCCTATCGCTGCTGC 766
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 GACGGCATGCCAATTGGCTTCTAAAGGACCTGTCTTTGGTGGAGCTCCTATCGCTGCTGC 828
Query 767 AGCTGTCTCAGCGCCTGCTCAGCATTCGAACTCTGAGCACACGCAGAAAAAGATTTATGT 826
|||||| |||||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 829 AGCTGTTTCAGCGCCTGCTCAGCATTCGAACTCGGAGCATACTCAGAAAAAGATTTATGT 888
Query 827 TAGTAATGTTGGAGCAGAGCTTGATCCACAGAAGTTACTTGG-GTTCTTCTCAAAGTTTG 885
||||||||| |||||||||||||||||||||||||| || | ||| |||||||||||||
Sbjct 889 TAGTAATGTCGGAGCAGAGCTTGATCCACAGAAGTTGCT-GATGTTTTTCTCAAAGTTTG 947
Query 886 GAGAGATTGAAGAAGGTCCTTTGGGTCTTGATAAGTTTACTGGGAGACCTAAAGGTTTCT 945
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 948 GAGAAATTGAAGAAGGTCCTTTGGGTCTTGATAAGTATACTGGGAGACCTAAAGGTTTCT 1007
Query 946 GTCTCTTTGTTTATAAGTCGGCTGAAAGCGCCAAGAGGGCTTTGGAGGAGCCACACAAGA 1005
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1008 GTCTCTTTGTTTATAAGTCGTCTGAAAGCGCCAAGAGGGCTTTGGAGGAGCCACACAAGA 1067
Query 1006 CTTTTGAAGGTCATATCTTGCATTGCCAGAAAGCTATCGATGGTCCCAAACCGGGCAAGC 1065
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 CTTTTGAAGGCCATATCTTGCATTGCCAGAAAGCTATCGATGGTCCCAAACCGGGCAAGC 1127
Query 1066 AGCAGCA---TCACCATAACCCACACGCCCACAACAATCCTCGTTACCAAAGGAATGATA 1122
||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1128 AGCAGCAGCATCACCATAACCCACACGCCTATAACAATCCTCGTTACCAAAGGAATGATA 1187
Query 1123 ACAATGGTTATGGTCCGCCTGGAGGTCATGGACATCTCATGGCTGGTAACCCAGCTGGAA 1182
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1188 ACAATGGTTATGGTCCGCCTGGAGGTCATGGACATCTCATGGCTGGTAACCCAGCTGGGA 1247
Query 1183 TGGGTGGTCCAGCGACACAGGCGATAAACCCGGCCATTGGACAGGCCTTGACAGCTATAC 1242
||||||||||| || |||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 1248 TGGGTGGTCCAACGGCACAGGTGATAAACCCGGCCATTGGACAGGCCTTGACAGCTTTAT 1307
Query 1243 TGGCATCTCAGGGAGCTGGTTTGGCTTTTAATCCGGCGATTGGACAGGCTTTGTTGGGTT 1302
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1308 TGGCATCTCAGGGAGCTGGTTTGGCTTTTAATCCGGCAATTGGACAGGCTTTGTTGGGTT 1367
Query 1303 CCTTGGGGACAGCTACAGGCGTAAACCC-G--AATGGAGTTGGAATGCCAACTGGTTATG 1359
|||||||||||||| | || |||||||| | |||||||||||||||||||||||||| |
Sbjct 1368 CCTTGGGGACAGCTGCTGGTGTAAACCCAGGGAATGGAGTTGGAATGCCAACTGGTTACG 1427
Query 1360 GTACTCAAGCTATGGCACCGGGGACAATGCCTGGGTACGGTACACAACCTGCGTTGCAAG 1419
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1428 GTACTCAAGCTATGGCACCGGGGACAATGCCTGGGTACGGTACACAACCTGGGTTGCAAG 1487
Query 1420 GTGGTTATCAGACTCCACAACCTGGTCAAGGCGGTACAAGCAGAGGGCAACATGGTGTCG 1479
| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1488 GCGGTTATCAGACTCCGCAACCTGGTCAAGGCGGTACAAGTAGAGGGCAACATGGTGTCG 1547
Query 1480 GGCCATACGGTGCTCCCTACATGGGCCACTAAATGTATCATGTATCCACCCACTCAGTCA 1539
||||||||||| |||| |||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1548 GGCCATACGGTACTCCTTACATGGGTCACTAAATGTATCATGTATCCATCCACTCAGTCA 1607
Query 1540 AACTTGGCGG-AAGTGGTGCAAGCTTCTCAATGACACAGCTGAAGAATGAT 1589
||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 1608 AACTTGGTGGGAAGTGGTGCAAGCTTCTCAACGACACAGCTGAAGAATGAT 1658
Score = 420 bits (227), Expect = 3e-116
Identities = 371/435 (85%), Gaps = 32/435 (7%)
Strand=Plus/Plus
Query 1597 GAAGAGAGTTTCTCGACAACAGGCAGTTAAGTCTTTGGATCTCCACAACATGCAT-C--C 1653
||| ||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 1702 GAATAGAGTTTCTCGACAACAGGCAGTTAAGTCTTTGGATCTCCACAACATGCTTGCAAC 1761
Query 1654 ----AGCT-A----AAAG-G-T-A--A-GTTCTTTGGCTATATACAACGTGCTTTGCAGT 1698
|| | | |||| | | | | ||||||||||||||||||||||| || || |
Sbjct 1762 TAAAAGGTAAGTTCAAAGTGTTGAGTATCTTCTTTGGCTATATACAACGTGC-TTCCAAT 1820
Query 1699 TGAAGGGTAAGTAATCAAAAGTGTTTGAAGTATATCTCTCAGCACGAATCTCTTGCCTAT 1758
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1821 TGAAGGGTAAGTAATCAAAAGTGTTAAAAGTATATCTCTCAGTGCGAATCTCTTGCCTAT 1880
Query 1759 ATATGTTCTTGTTAATTGGTCCTA-TCCCCTCTTTGAAGTGTTAAAAGTTGATTTTGGTC 1817
||||||||||||| |||||||||| |||| ||||||||||| ||||||||| ||||||||
Sbjct 1881 ATATGTTCTTGTTTATTGGTCCTAGTCCC-TCTTTGAAGTGATAAAAGTTGGTTTTGGTC 1939
Query 1818 TAAAAAGCATGTACCTTCAAGTCCTTGTGCACAAGGTTCAGGGATTAACAGAAA-GTCAC 1876
|| | |||||||||||||| ||||||||||||||||||||||||||| ||||| |||||
Sbjct 1940 TAGAGAGCATGTACCTTCAGGTCCTTGTGCACAAGGTTCAGGGATTATTAGAAAAGTCAC 1999
Query 1877 AAGAGTATTAAGTGATAGATTGTTCCCCTTGATGTTTTC-GAGGAGTTTAGAGAGGCGTG 1935
||||||| | |||||| ||| || ||||| |||||| | |||||||||| | |||||||
Sbjct 2000 AAGAGTACGAGGTGATATATTATTTCCCTTAATGTTT-CAGAGGAGTTTATAAAGGCGTG 2058
Query 1936 AGTGCATGAAGTTTGTTGGTGAATGGTGATGATTACTTTGATGGTGGAGTCTTCTTTT-G 1994
| ||||| |||||| || | ||||||||||| ||||||||||| | ||| ||||| |
Sbjct 2059 AATGCATAAAGTTT-TT--T---TGGTGATGATTGCTTTGATGGTGAAATCT-CTTTTTG 2111
Query 1995 GAAAAGTGCAGCTTT 2009
|||||||||||||||
Sbjct 2112 GAAAAGTGCAGCTTT 2126
Score = 134 bits (72), Expect = 5e-30
Identities = 88/95 (93%), Gaps = 3/95 (3%)
Strand=Plus/Plus
Query 2010 AGCTGAAGTGGAA--GTGGGAAGTAAGTAGTAGAGTTTTGTGTCTTTGATCTCAATTCT- 2066
||||||||||||| | |||||||||||||||||||||||||| ||||||||||| ||
Sbjct 2197 AGCTGAAGTGGAATTGGGGGAAGTAAGTAGTAGAGTTTTGTGTATTTGATCTCAAGTCAA 2256
Query 2067 CAATCTCTCAATTGTTATGTCAAGTTTCGAAAAGG 2101
|||||||||||||||||||||||||||||||||||
Sbjct 2257 CAATCTCTCAATTGTTATGTCAAGTTTCGAAAAGG 2291
> AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17126989-17129563 FORWARD LENGTH=1787
Length=1787
Score = 702 bits (380), Expect = 0.0
Identities = 959/1223 (78%), Gaps = 102/1223 (8%)
Strand=Plus/Plus
Query 312 GCGGCGGCGACGTCTGGATCTGGGAATCAAGGGGATGTAAATGATGATGATGACGATGAG 371
|||| | || |||| ||||||||||||||||| ||| | |||||||| || || ||
Sbjct 348 GCGGAGACGTCGTCCGGATCTGGGAATCAAGGAAATG---AGGATGATGACGAAGAAGAA 404
Query 372 CCAATTCAGGATCTGTTGGAACCGTTTTCAAAGGAACAACTTTTGAGTCTTCTTAAAGAA 431
|| ||| ||||||| |||||||||||||||||||| |||||||||| |||||| || |||
Sbjct 405 CCTATTGAGGATCTATTGGAACCGTTTTCAAAGGATCAACTTTTGATTCTTCTCAAGGAA 464
Query 432 GCAGCGGAGAAG-CATCTTGATGTAGCCAATCGAATCCGGGA-AGTAGCTGATGAGGACC 489
|| || ||| || |||| |||||||| |||||||||| ||| || || ||||| || |
Sbjct 465 GCTGCAGAG-AGACATCGCGATGTAGCTAATCGAATCC-GGATTGTGGCGGATGAAGATC 522
Query 490 CTGTTCACCGGAAGATCTTCGTGCACGGTCTTGGTTGGGATACCAAAACAGAGACGCTTA 549
|||||| || ||||||||||| ||||| ||||| |||||||| ||| | || | ||||
Sbjct 523 TTGTTCATCGTAAGATCTTCGTTCACGGGCTTGGATGGGATACTAAAGCTGATTCACTTA 582
Query 550 TCGAAGCTTTTAAGCAGTACGGAGAGATCGAAGATTGC-AAGGCTGTGTTTGATAAGATC 608
|||| |||||||| |||||||||||||| ||||||||| || | |||| |||||||| |
Sbjct 583 TCGACGCTTTTAAACAGTACGGAGAGATTGAAGATTGCAAATG-TGTGGTTGATAAGGTA 641
Query 609 TCAGGGAAATCTAAAGGTTATGGCTTTATTTTGTTCAAGTCTCGGTCAGGTGCTCGCAAT 668
|| ||| |||||||||||||||||||||| | || ||||| |||| |||||||| ||
Sbjct 642 TCTGGGCAATCTAAAGGTTATGGCTTTATCCTCTTTAAGTCAAGGTCTGGTGCTCGTAAC 701
Query 669 GCACTTAAGCAGCCTCAGAAGAAGATTGGTAGTCGTATGACGGCATGTCAATTGGCTTCT 728
|| |||||||||||||||||||||||||| | ||||||||| || || || |||| |||
Sbjct 702 GCTCTTAAGCAGCCTCAGAAGAAGATTGGAACTCGTATGACTGCGTGCCAGCTGGCGTCT 761
Query 729 AAAGGACCTGTCTTTGGTGGAGCTCCTATCGCTGCTGCAGCTGTCTCAGCGCCTGCTCAG 788
| ||||||||| | || ||| | || | | | | | || || |||||||||
Sbjct 762 ATAGGACCTGT-TCAGG-GGAAC-CC--T-G-T--T---G-TG-----GCTCCTGCTCAG 803
Query 789 CA-TTCGAACT-CTGAGCACACG--CAGAAAAAGATTTATGTTAGTAATGTTGGAGCAGA 844
|| ||| || | ||||| | | | |||| ||||||||||| ||||| ||| | |||||
Sbjct 804 CATTTC-AA-TCCTGAG-A-ATGTTCAGAGGAAGATTTATGTCAGTAACGTTAGTGCAGA 859
Query 845 GC-TTGATCCACAGAAGTTACTTGG-GTTCTTCTCAAAGTTTGGAGAGATTGAAGAAGGT 902
| ||||||| |||||||| | ||| ||| ||||||| |||||| ||||| |||||||||
Sbjct 860 -CATTGATCCGCAGAAGTTGC-TGGAGTTTTTCTCAAGGTTTGGGGAGATAGAAGAAGGT 917
Query 903 CCTTTGGGTCTTGAT-AAGTTTACTGGGAGACCTAAAGGTTTCTG-TCTCTTTGTTTATA 960
|||||||| |||||| ||| |||||||||||||||||||||| | | | ||||| |||
Sbjct 918 CCTTTGGGGCTTGATAAAG-CTACTGGGAGACCTAAAGGTTTC-GCTTTGTTTGTCTAT- 974
Query 961 AG-TCGGCT-GAAAGCGCCAAGAGGGCTTTGGAGGAGCCACACAAGACTTTTGAAGGTCA 1018
|| || || ||||| ||||||| ||| ||||||||||||||||||||||||||||| ||
Sbjct 975 AGATC-CCTAGAAAGTGCCAAGAAGGCATTGGAGGAGCCACACAAGACTTTTGAAGGCCA 1033
Query 1019 TATCTTGCATTGCCAGAAAGCTA-TCGATGGTCCCAAACCGGGCAAGCAGCAGCATCACC 1077
| ||||||||||||| ||||| | | ||||| || |||| || ||||| | ||||| |
Sbjct 1034 TGTCTTGCATTGCCACAAAGCAAAT-GATGGGCCAAAACAGGTTAAGCA--A-CATCAAC 1089
Query 1078 ATAACCCACA-CGCCCACAA-CAA--T-CCTCGTTACCAAAGGAATGATAACAATGGTTA 1132
|||||| | | | | ||||| ||| | || |||||||||||||| || |||||||||||
Sbjct 1090 ATAACC-ATAACTCTCACAATCAAAATTCC-CGTTACCAAAGGAACGACAACAATGGTTA 1147
Query 1133 TGGT-CCGCCTGGAGGTCATGGACATCTCATGGCTGGTAACCCAGCTGGAATGGGTGGTC 1191
|||| || |||||||| ||||||||| |||| |||||||| | | || | || |
Sbjct 1148 TGGTGCC-CCTGGAGGCCATGGACATTTCATAGCTGGTAATA-ACC---AA-GC-TG-T- 1198
Query 1192 CAGCGACACAGGCGATAAACCCGGCCATTGGACAGGCCTTGACAGCTATACTGGCATCTC 1251
|| | |||| | || ||||||||||| |||||| | |||||| | ||||||||||
Sbjct 1199 --GC-A----GGCGTTTAATCCGGCCATTGGCCAGGCCCTCACAGCTTTGCTGGCATCTC 1251
Query 1252 AGGGAGCTGGTTTGGCTTTTAATCCG-GCGATT-GGACAGGCTTTGTTGGGTTCCTTGGG 1309
|||| ||||| |||| ||| || || || ||| || |||||||||||||| | || ||
Sbjct 1252 AGGGTGCTGGGTTGGGTTTAAA-CCAAGC-ATTTGGGCAGGCTTTGTTGGGGACATTAGG 1309
Query 1310 GACAGCTACAGGCGTAA-ACCCGAATGGAGTTGGAATGCCAACTGGTTATGGTACTCAAG 1368
|||||||| | | | | | | | || | |||||||||| ||| |||||||||||||
Sbjct 1310 GACAGCTA--GCCC-AGGAGCTGTA-GG--T-GGAATGCCAAGTGGCTATGGTACTCAAG 1362
Query 1369 C---TATGGCACC-GGGGACAATGCCTGGGTACGGTACACAA-CCTGCGTTGCAAGGTGG 1423
| ||| |||| |||| | || |||||||||||| | ||| || | || || || ||
Sbjct 1363 CAAATATCTCACCTGGGGTCTAT-CCTGGGTACGGTGCTCAAGCCGG-GTACCAGGGCGG 1420
Query 1424 TTATCAGACTCCA-CAACCTGGTCAAGGCGGTACAAGCAGAGGGCAACATGGTG-TCGGG 1481
||||||||||| | ||||||||||| |||||| | | |||||||| ||||||| | |||
Sbjct 1421 TTATCAGACTC-AGCAACCTGGTCAGGGCGGTGCGGGAAGAGGGCAGCATGGTGCT-GGG 1478
Query 1482 CCATACGGTGCTCCCTACATGGG 1504
|| |||| ||| ||||||||
Sbjct 1479 T-AT--GGTGGTCCTTACATGGG 1498
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111244407720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5