BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486129
Length=956
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56880.1 | Symbols: | VQ motif-containing protein | chr3:21... 1107 0.0
> AT3G56880.1 | Symbols: | VQ motif-containing protein | chr3:21059915-21060965
FORWARD LENGTH=1051
Length=1051
Score = 1107 bits (599), Expect = 0.0
Identities = 871/988 (88%), Gaps = 76/988 (8%)
Strand=Plus/Plus
Query 26 TGATCCACTAAAAAAGATTCCCtttt-t-ttCTTCTCCGATTTAGAATTACTTACTTAAC 83
|||||||||||||||||||| ||||| | |||||||||| | || |||||||||||||
Sbjct 69 TGATCCACTAAAAAAGATTCTCTTTTCTCTTCTTCTCCG--GT-GATTTACTTACTTAAC 125
Query 84 CATCATGGCTTCGTCGGAGGGATTAGCAAGCGTTGATCCTTGGTCCTTCCGTCAAAACTT 143
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 126 AATCATGGCGTCGTCGGAGGGATTAGCAAGCGTTGATCCTTGGTCATTCCGTCAAAACTT 185
Query 144 CAACATCGATTCATGGCTAATCTCTGATTCCTTCTCTCACGATAGTGATTTACTCGCTAA 203
|||||||||||| |||||| |||||||||||||||| ||||| |||||| ||||||||||
Sbjct 186 CAACATCGATTCGTGGCTACTCTCTGATTCCTTCTCACACGACAGTGATATACTCGCTAA 245
Query 204 AGCTCTTCACAGATCCATCTCCACTTCCACCGAATCATCTCCTCTTTCTCCTTCATCTTT 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 AGCTCTTCACAGATCCATCTCCACTTCCACCGAATCATCTCCTCTTTCTCCTTCATCTTT 305
Query 264 CTTCGACTCTTCAACCGCCGCCGCCTTAGTCTCCGATTT-TTCTCCTCAAACTCTCTCTA 322
||||||||||||||||||||||| | | | | ||| | |||||||||||||||| |
Sbjct 306 CTTCGACTCTTCAACCGCCGCCGTC-GA-T-T----TTTCTCCTCCTCAAACTCTCTCCA 358
Query 323 ACGTCTCTTTCGGCTCAGATCCAGAAAT------C-C-----C-C---G---C--GAAAC 361
|||||||||||||||||||||||||||| | | | | | | |||||
Sbjct 359 ACGTCTCTTTCGGCTCAGATCCAGAAATCCCCGCCGCTAGTGCTCTTGGTCTCGGGAAAC 418
Query 362 GAAAACGTGGTCCTGGTTTTTCCGGTGGTAAACCAACGAAACGCCGATCTCGAGTTTCTA 421
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 419 GAAAACGTGGTCCTGGTGTTTCCGGTGGTAAACAAACGAAACGCCGATCTCGAGTTTCTA 478
Query 422 ATAAGAAATCTCAAACCACGTTTATAACGGCGGACGCTGCTAATTTCCGGCAGATGGTTC 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 ATAAGAAATCTCAAACCACGTTTATAACGGCGGACGCTGCTAATTTCCGGCAGATGGTTC 538
Query 482 AGCAAGTCACCGGAGCTAAGTTCCTCGGTTCTTCCAACAGCATTTTCGCACCGATTGTGA 541
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 AACAAGTCACCGGAGCTAAGTTCCTCGGTTCTTCCAACAGCATTTTCGCACCGATTGTGA 598
Query 542 AGCCGGAGCCGCATCGACTCGCTAGTAGACTACCACCGTCGTGCGGGAACTTGGATCGAT 601
|||||||||| || || |||||||||||| |||||||||||||||| |||||||| ||||
Sbjct 599 AGCCGGAGCCACACCGTCTCGCTAGTAGATTACCACCGTCGTGCGGAAACTTGGACCGAT 658
Query 602 CTTCGGCTGTTCCGACGCTAGATACGTCGTCGTTTTTGTCTAACCATCACCAAGAGAACA 661
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CTTCAGCTGTTCCAACGCTAGATACGTCGTCGTTTTTGTCTAACCATCACCAAGAGAACA 718
Query 662 TTATCACAGATTTGGGCTCTGTTTCAGCTCCTATCGGTTCGTTTCATCATCAGTCAAGTG 721
|||||||||||||||| |||||| | |||||||||||||||||| || ||||
Sbjct 719 TTATCACAGATTTGGG---------AGCTCCGACCGGTTCGTTTCATCATCAATCCAGTG 769
Query 722 CTGCTACAACGACGGCGAACGTTGGTGGTGG---CTCCGCCGTGGAATTGGATAGTTACC 778
| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 770 CAGGTACAACGACGGCGAACGTTGGTGGTGGTAGCTCCGCCGTGGAATTGGATAGTTACC 829
Query 779 CGAGCTTCCCAACACTTGAATCATGGAAAGTTATGTGATCGATCT-A------GAT--GT 829
|||||||||||||||| |||||||||||||||||||||||||||| | ||| ||
Sbjct 830 CGAGCTTCCCAACACTCGAATCATGGAAAGTTATGTGATCGATCTGATTTTAAGATTAGT 889
Query 830 A---ATCt-----t-t--t---ttttcttttt--c-tt-gtatttctc-ttttgttatga 870
|| | | | | |||| ||||| | || || |||||| |||||||||||
Sbjct 890 GTTTATGTAGAGATGTAATCCCTTTTGTTTTTTTCCTTTGTGTTTCTCATTTTGTTATGA 949
Query 871 agaatcttgttttcgtcctta-gcttttgCGGCTATGGAGTCTCTTGTTCATACTTTTGG 929
||||||||||||| ||||||| |||| ||| |||||||||||||||||||||||||||||
Sbjct 950 AGAATCTTGTTTTAGTCCTTAAGCTTATGCAGCTATGGAGTCTCTTGTTCATACTTTTGG 1009
Query 930 GGAAATCAAATGGTTAAT-GGaaaaaaa 956
||||||||||||||| || |||||||||
Sbjct 1010 GGAAATCAAATGGTTTATTGGAAAAAAA 1037
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46767990857
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5