BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486131
Length=1598
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56900.1 | Symbols: | Transducin/WD40 repeat-like superfami... 2449 0.0
AT3G56910.1 | Symbols: PSRP5 | plastid-specific 50S ribosomal p... 87.9 3e-16
> AT3G56900.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr3:21066124-21069483 FORWARD LENGTH=1690
Length=1690
Score = 2449 bits (1326), Expect = 0.0
Identities = 1442/1495 (96%), Gaps = 20/1495 (1%)
Strand=Plus/Plus
Query 123 AAAAGGGACAATGGCATCTTTTCCTCATCCCGGTTCCGTCACCGTCTGCGAGATCAACAG 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 197 AAAAGGGACAATGGCATCTTTTCCTCATCCCGGTTCCGTCACCGTCTGCGAGATCAACAG 256
Query 183 AGACTTGATTACGGCTCAGAACTTGTCTGATGAGCGAGCTCTGGAGACATATGGAAAAGT 242
|||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||
Sbjct 257 AGACTTGATTACGGCTCAGAACTTATCTGATGAGCGAGCTCAGGAGACTTATGGAAAAGT 316
Query 243 TCTTGGAATGGTGTTTAGCCCTGTTTCGTTCGACTCTACACCTAGCTCTCTTCAGGAAAA 302
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 317 TCTTGGAATGGTGTTTAGCCCTGTTTCGTTCGACTCTACTCCTAGCTCTCTTCAGGAAAA 376
Query 303 TGAAGGACAAGAGAATGGAGATAAGGCAAGTGTTGAGAGTAAAGGACTGGTGGCAACACT 362
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 377 TGAAGGACAAGAGAATGGAGATAAGGCAAGTGGTGAGAGTAAAGGACTGGTTGCAACACT 436
Query 363 TCAGATGAAGGTTTCAGACAT-TCTTAAACAGATTTTACAACCCACCGATGTAACTCTCC 421
|||||||||||| ||||| | |||||||||||||||||||||||||||||||||||| |
Sbjct 437 GCAGATGAAGGTTGCAGAC-TCTCTTAAACAGATTTTACAACCCACCGATGTAACTCTAC 495
Query 422 TCTCAGAGATTGATCTTCAAGGAGTGAGTTGGCATCAAGGGAAGCATATTATTGCCTTTA 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 TCTCAGAGATTGATCTTCAAGGAGTGAGTTGGCATCAAGGGAAGCATATTATTGCCTTTA 555
Query 482 TATCTGGTGCAAATCAAGTTACAATTCGTGATTATGACGACAAAGATGAGAAGGAACCTT 541
|||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 556 TATCCGGTGCAAATCAAGTTACAATTCGTGATTATGAGGACAAAGATGAGAAAGAACCTT 615
Query 542 GCATTTTGACAAGTGATTCACAGAGAAGTGTTAAAGCCCTTGAGTGGAGACCAAATGGTG 601
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 616 GCATTTTGACAAGTGATTCACAAAGAAATGTTAAAGCCCTTGAGTGGAGACCAAATGGTG 675
Query 602 GAAAATCCCTATCCGTAGCCTGTCGGGGAGGAATATGCATATGGGCTGCTTCCTATCCAG 661
|||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 676 GAAAATCCCTATCCATTGCCTGTCGGGGAGGAATATGCATATGGGCTGCTTCATATCCGG 735
Query 662 GTAACATGGCATTGGTTAGATCCGGTGGTTCCGCGTTGAGGGGAAGTCTCTCTCGAGGAT 721
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 736 GTAACATGGCATTGGTTAGATCTGGTGGTTCCGCATTGAGGGGAAGTCTCTCTCGAGGAT 795
Query 722 CTGGAACTCGCTGGATTTTGGTTGACTTTCTTCGGTGTCAAAATGATGAGCAAATTAGTG 781
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 796 CTGGAACTCGTTGGATTTTGGTGGACTTTCTTCGGTGTCAAAATGATGAGCAAATTAGTG 855
Query 782 CTCTCTCATGGAGCCCCTGTGGAAGATATTTAGCATCAGCCTCATATGACAGCTCATCTT 841
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 856 CTCTCTCATGGAGCCCCTGTGGAAGGTATTTAGCATCAGCCTCATATGACAGTTCATCTT 915
Query 842 TCACCATATGGGATGTTTCTCAAGGGGCGGGGACACCTATTAGACGGGGACTAGGTGGAA 901
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 916 TCACCATATGGGATGTTTCTCAAGGGGCAGGGACACCTATTAGACGGGGACTAGGTGGAA 975
Query 902 TATCAATGCTTAAATGGTCACCTACAGGAGACTACTTCTTTGCAGCAAGATTTGATGGGA 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 TATCAATGCTTAAATGGTCACCTACAGGAGACTACTTCTTTGCAGCAAGATTTGATGGGA 1035
Query 962 CTTTTTGTCTTTGGGAAACAAACACATGGACATCTGAGCCCTGGTCTTTGTCTAGTGGAT 1021
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1036 CTTTTTGTCTTTGGGAAACAAACACATGGACATCTGAACCCTGGTCTTTGTCTAGTGGAT 1095
Query 1022 CTGGATCTGTCACGGGAGCGATATGGGATCCCGAAGGACGGTTTATCTTGATTTCGTTTT 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 CTGGATCTGTCACGGGAGCGATATGGGATCCCGAAGGACGGTTTATCTTGATTTCGTTTT 1155
Query 1082 CGAAATCTTCAACACTGGGCTCTGTTCATTTCTCATCCAAGCCACCATCCTTGGATGCCC 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1156 CGAAATCTTCAACACTGGGCTCTGTTCATTTCTCATCCAAGCCACCATCCTTGGATGCCC 1215
Query 1142 ATCTATTACCAGTTGAATTGCCAGAGATTGCTTCTCTGACTGGCAGTGAGGGCATCGAGA 1201
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1216 ATCTATTACCAGTTGAATTGCCAGAGATTGCTTCTCTAACTGGCTGTGAGGGCATCGAGA 1275
Query 1202 AGATAGCATGGGATGCATCTGGAGAACGATTGGCTGTGTCATACAAAGGAGGCGATGAAA 1261
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1276 AGATAGCATGGGATGCATCTGGAGAACGATTGGCTGTGTCGTACAAAGGAGGCGATGAAA 1335
Query 1262 ATTACAAAGGATTGATTGCCATCTACGACACACGAAGGACACCTATTGTATCAGCATCAC 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1336 ATTACAAAGGATTGATTGCCATCTACGACACACGAAGGACACCTATTGTATCAGCATCAC 1395
Query 1322 TAGTCGGTTTCATCAGAGGACCTGGAGAAAACCCGAAAGCTCTCTCCTTTTCATTCCATG 1381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1396 TAGTCGGTTTCATCAGAGGACCTGGAGAAAACCCGAAAGCTCTCTCCTTTTCATTCCATG 1455
Query 1382 ACAAGTTCAAGCAAGGTCCACTCCTTTCCGTGTGTTGGAGCACCGGATTCTGTTGCACCT 1441
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1456 ACAAGTTCAAGCAAGGTCCACTCCTTTCTGTGTGTTGGAGCACCGGATTCTGTTGCACCT 1515
Query 1442 ATCCTCTCATCTTCCGCTCACATGTTCTTCCTTAATAGCCAAATGGTTCAAATTCAATGC 1501
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1516 ATCCTCTCATCTTCCGCTCACATGTTCTTCCTTAATAGCCAAATGGTTCAAATTTAATGC 1575
Query 1502 AAGTTTCAAACTTTTGGGTTCTATTTTGTAGACTGCTCACTCTTT-T-TA-AA--G---- 1552
||||||||||||||| ||||||||||||||||||||||||||||| | || || |
Sbjct 1576 AAGTTTCAAACTTTTTGGTTCTATTTTGTAGACTGCTCACTCTTTGTATACAAATGGTTT 1635
Query 1553 ----AA----CTCAGATT-GAAGTTAAATCCAAAAACAATGGTTGCATTTGAAGT 1598
|| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1636 CTTTAAAGAACTCAGCTTTGAAGTTAAATCCAAAAACAATGGTTGCATTTGAAGT 1690
Score = 159 bits (86), Expect = 6e-38
Identities = 110/122 (90%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 1 CATTGTTCAAAATCAAAACCCCTAAACTCAAATCCTCTCTCCGTTTTTCCGGCGAAAATC 60
||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 7 CATCGTTCAAAATCAAAACCCCTAAACTCAAATTCTCTCTCCGTTTTTCCGGTGAAAATC 66
Query 61 CGTCGCCGTTCTCCGGTCACTGTCTACTCTCACCGTGTGATTTATAGTCTAATCAAACCT 120
||||||||||||||| ||| |||||| || ||||||| |||| ||||| |||||||||
Sbjct 67 AGTCGCCGTTCTCCGGCCACAGTCTACACTAACCGTGTCATTTCGAGTCTCATCAAACCT 126
Query 121 TT 122
||
Sbjct 127 TT 128
> AT3G56910.1 | Symbols: PSRP5 | plastid-specific 50S ribosomal
protein 5 | chr3:21069411-21070356 REVERSE LENGTH=693
Length=693
Score = 87.9 bits (47), Expect = 3e-16
Identities = 52/54 (96%), Gaps = 1/54 (2%)
Strand=Plus/Minus
Query 1546 TTTAAAGAACTCAG-ATTGAAGTTAAATCCAAAAACAATGGTTGCATTTGAAGT 1598
|||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 674 TTTAAAGAACTCAGCTTTGAAGTTAAATCCAAAAACAATGGTTGCATTTGAAGT 621
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78915256740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5