BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486132
Length=657
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56910.1 | Symbols: PSRP5 | plastid-specific 50S ribosomal p... 959 0.0
AT3G56900.1 | Symbols: | Transducin/WD40 repeat-like superfami... 71.3 1e-11
> AT3G56910.1 | Symbols: PSRP5 | plastid-specific 50S ribosomal
protein 5 | chr3:21069411-21070356 REVERSE LENGTH=693
Length=693
Score = 959 bits (519), Expect = 0.0
Identities = 621/667 (93%), Gaps = 19/667 (3%)
Strand=Plus/Plus
Query 1 AATCCGTTCGTTAAGAAGACACAGACA-AG-G-A-GA-AAAAAGCTTATCCACTA-GAGA 54
||||||||||||||||||||||||||| || | | || ||||||||||||||||| | |
Sbjct 1 AATCCGTTCGTTAAGAAGACACAGACAGAGAGAAGGAGAAAAAGCTTATCCACTATCAAA 60
Query 55 -CACAG--AGAAGACGAATTCTTCCATTAGAAGAAGAAGATGGctcttctctgcttcaat 111
| || |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGAAAGTCTGAAGACAAATTCTTCCATTAGAAGAAGAAGATGGCTCTTCTCTGCTTCAAT 120
Query 112 tctctcccttctctttcttctctctcttcttcatcttcgtcgcgccttcttcaaccttcg 171
|||||||||||||| |||||||| |||||||| ||||| ||||||||||||||| || ||
Sbjct 121 TCTCTCCCTTCTCTCTCTTCTCTTTCTTCTTCTTCTTCCTCGCGCCTTCTTCAATCTCCG 180
Query 172 tctttcgcttctcCAGTTTGGAGCCTTAAACCCAACGCTGTTGAGTCAAAGAACAGAGTC 231
||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||
Sbjct 181 TCTTTCGCTTCTCCAGTTTTGAGCCTTAAACCCAACGCTGTCGAGTCCAAGAACAGAGTC 240
Query 232 TCTCTCAGTGCTTACAGCTTGAACTCTAGCCATGGAAGGGCGGTAGCAATTGTGGTGAAG 291
||||||||||||||||||||||||||||||||||| | || |||||||||||||
Sbjct 241 TCTCTCAGTGCTTACAGCTTGAACTCTAGCCATGG-A-------AG-AATTGTGGTGAAG 291
Query 292 GCGGCTGCTTCTGGCGTGGACGGGGCTGAGCCCGAGAGCAATGAGGAACCAAATACTGTT 351
|||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 292 GCGGCTGCTTCTGGCGTGGACGGGGCTGAGCCTGAGAGCAAGGAGGAACCAAAGACTGTT 351
Query 352 GTTGCTGCTGTTCCAGTGGATAAACTACCATTGGAATCAAAAGAAGCTAAAGAGAAACTG 411
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 352 GTTGCTGCTGTTCCAGTGGATAAACTACCGTTGGAATCGAAAGAAGCTAAAGAGAAACTG 411
Query 412 CTCTTGGAACTGAGGCTGAAGATGAAGCTGGCCAAGAAGATTAGGCTACGCAGGAAACGT 471
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 412 CTCTTGGAATTGAGGCTGAAGATGAAGCTGGCCAAAAAGATTAGGCTACGCAGGAAACGT 471
Query 472 CTGGTTCGTAAGCGTAGGATGAGGAAGAAGGGTCGATGGCCACCTTCCAAGATGAAGAAA 531
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 CTGGTTCGTAAGCGTAAGATGAGGAAGAAGGGTCGATGGCCACCTTCCAAGATGAAGAAA 531
Query 532 AACAAGAATGTCTAAGTGACTGAACTGTTTGCTGCTTTTCATATTCGTTTTT-GTAATGT 590
||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||
Sbjct 532 AACAAGAATGTCTAAGTGACTCAACTGTTTGCTGCTTTTCGTATTCGTTTTTTGTAATGT 591
Query 591 TCTTTTTGGTGTTCAAGGACCCTTAATGTACTTCAAATGCAACCATTGTTTTTGGATTTA 650
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 592 TCTTTTTGGTGTTCAAAGACCATTAATGTACTTCAAATGCAACCATTGTTTTTGGATTTA 651
Query 651 ACTTCAA 657
|||||||
Sbjct 652 ACTTCAA 658
> AT3G56900.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr3:21066124-21069483 FORWARD LENGTH=1690
Length=1690
Score = 71.3 bits (38), Expect = 1e-11
Identities = 38/38 (100%), Gaps = 0/38 (0%)
Strand=Plus/Minus
Query 620 ACTTCAAATGCAACCATTGTTTTTGGATTTAACTTCAA 657
||||||||||||||||||||||||||||||||||||||
Sbjct 1690 ACTTCAAATGCAACCATTGTTTTTGGATTTAACTTCAA 1653
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31747980904
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5