BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486134
Length=843
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27550.1 | Symbols: ATC | centroradialis | chr2:11773251-117... 1256 0.0
> AT2G27550.1 | Symbols: ATC | centroradialis | chr2:11773251-11774681
FORWARD LENGTH=866
Length=866
Score = 1256 bits (680), Expect = 0.0
Identities = 809/867 (93%), Gaps = 25/867 (3%)
Strand=Plus/Plus
Query 1 TCAAATCAACACAAACATATCCCCCAAAGCAGAACTAAAGCAAACCCAAGCTTGTCTCTC 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 TCAAATCAACACAAACATATCCCCCAAAGCAGAACTAAAGCAAGCCCAAGCTTGTCTCTC 60
Query 61 CCAACACCAACACACACATTCTC--ATCAAACTCAAATCACTATTTCCTTAATTTCTTT- 117
|| | |||||||||||||| || |||||||||||| |||||||||||||||||||||
Sbjct 61 CCCATTCCAACACACACATTTTCATATCAAACTCAAAACACTATTTCCTTAATTTCTTTC 120
Query 118 -C--A--CTTC--TTC-T--TCTAAATTCTTAACCAAGCAATCGAGATGGCCAGGATTTC 167
| | |||| ||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACTTATTCTTCATTTCTTCGTCTAAATTCTTAACCAAGCAATCGAGATGGCCAGGATTTC 180
Query 168 CTCAGACCCGCTTATGGTTGGGAGAGTGATCGGAGACGTTGTGGACAATTGTTTGCAGGC 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTCAGACCCGCTTATGGTTGGGAGAGTGATCGGAGACGTTGTGGACAATTGTTTGCAGGC 240
Query 228 AGTGAAAATGACTGTGACCTATAACTCTGACAAGCAAGTCTACAATGGACATGAACTTTT 287
|||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 241 AGTGAAAATGACGGTGACCTATAATTCTGACAAGCAAGTCTACAATGGCCATGAACTTTT 300
Query 288 TCCTTCTGCT-GTTACAAACAAACCTAAGGTTGAAGTTCATGGGGGTGACATGAGATCAT 346
||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CCCTTCTG-TAGTTACATACAAACCTAAGGTTGAAGTTCATGGGGGTGACATGAGATCAT 359
Query 347 TCTTCACTTTGGTCATGACTGATCCTGATGTTCCTGGACCTAGTGATCCTTATCTGAGAG 406
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCTTCACTTTGGTTATGACTGATCCTGATGTTCCTGGACCTAGTGATCCTTATCTGAGAG 419
Query 407 AGCACTTGCACTGGGTTGTTACCGATATCCCGGGGACGACCGATGTATCATTTGGAAAAG 466
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 420 AGCACTTGCACTGGATTGTTACCGATATCCCGGGGACGACTGATGTATCATTTGGTAAAG 479
Query 467 AGATAATCGGGTACGAGATGCCTCGGCCAAATATAGGGATCCACCGCTTTGTGTATTTGT 526
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 480 AGATAATCGGGTACGAGATGCCTCGGCCAAACATAGGGATCCACCGCTTTGTGTATTTGT 539
Query 527 TGTTCAAACAGAACCGTAGAGGAAGTGTGGTGTCTGTGCCATCGTACAGAGACCAATTCA 586
||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 540 TGTTCAAGCAGACCCGTAGAGGAAGTGTGGTGTCTGTGCCATCTTACAGAGACCAATTCA 599
Query 587 ACACTCGAGAATTTGCGCATGAGAACGATCTCGGCCTTCCCGTCGCGGCGGTTTTCTTCA 646
|||||||||| ||||| |||||||||||||| ||||| ||||||||||| ||||||||||
Sbjct 600 ACACTCGAGAGTTTGCTCATGAGAACGATCTTGGCCTCCCCGTCGCGGCTGTTTTCTTCA 659
Query 647 ACTGCCAGCGTGAGACCGCCGCTAGACGTCGTTGAATGAC-----AGC-C-GCCGC---T 696
|||||||||||||||||||||||||||| ||||||||||| | | | ||||| |
Sbjct 660 ACTGCCAGCGTGAGACCGCCGCTAGACGCCGTTGAATGACTTTCCACCGCTGCCGCAGCT 719
Query 697 GCCGTAACTGATTCTGGCTGTGCCCGGACAATATGTGTTGTTCCATGCATTCTATAATTT 756
||| ||||| | |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 720 GCCCTAACTAACTCTGGCTGTGCCCGGACAATATGTGTTGTTCCATGCATTCTATATTTT 779
Query 757 AGTTACGGGAAGCAGCTTTTCCTATCGTATTTATGTGTGTATTTGTTATGAACTCTTTGT 816
||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 780 AGTTACGGGAAACAGCTTTTCCTATCATATTTATGTGTGTATTTGTTATGAACTGTTTGT 839
Query 817 GATCTGAATAAACTTGGCTTATAATCT 843
|||||||||||||||||||||||||||
Sbjct 840 GATCTGAATAAACTTGGCTTATAATCT 866
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41091532246
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5