BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486136
Length=2007
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56930.1 | Symbols: | DHHC-type zinc finger family protein ... 2898 0.0
> AT3G56930.1 | Symbols: | DHHC-type zinc finger family protein
| chr3:21073495-21076314 FORWARD LENGTH=2073
Length=2073
Score = 2898 bits (1569), Expect = 0.0
Identities = 1903/2050 (93%), Gaps = 80/2050 (4%)
Strand=Plus/Plus
Query 25 TTCGAGTGAGAGAGACGACAGCTTCCATT-TTCCTTGTCTCTCTCCCTCTCGAACTACAA 83
||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||
Sbjct 37 TTCGAGTGAGAGAGACGACAGCTTCCATTATCCCCTGTCTCTCTCCCTCTCGAACTACAA 96
Query 84 ATCAAATCCGAGTG-TTTGAAATTGTTAAtc----t-tt------------agattttgt 125
||||||| |||||| ||| | |||||||||| | || |||||||||
Sbjct 97 ATCAAATTCGAGTGTTTTCATATTGTTAATCTTTTTCTTCAAGGAAAGAAGAGATTTTGT 156
Query 126 tttccgtttctgggggtttttcttgattttgatctctgatctgatctgatCATCATTGTC 185
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 157 TTTCCGTTTCTGGGGGTTTTTCTTGATTCTGATCTCTGATCTGATCTCATCATCATTGTC 216
Query 186 CATGGATTCTCCGATGGGTTTCTGATTCTGGGTTCTTCCAAATTTCTTCACTTCTGGAG- 244
| ||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||
Sbjct 217 CGTGGATTCTCCGATGGGTTTCTGATTGTGGGTTCTTTCAAATTTCTTCACTTTTGGAGC 276
Query 245 -------CT-T-T-TC-------TT-CCTCAGCTATGGCTTGGAATGAGACCAAACTCAA 286
|| | | || || ||||||||||||||||||||||||||||||||||
Sbjct 277 TTTTCTTCTCTCTGTCTTTTGTTTTCCCTCAGCTATGGCTTGGAATGAGACCAAACTCAA 336
Query 287 GAGGCTCTATCAAGTTTGGAGGGGAAGCAATAAATTTCTATGTGGCGGGAGGTTAATCTT 346
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||
Sbjct 337 GAGGCTCTATCAAGTTTGGAGAGGAAGCAATAAATTTCTATGTGGCGGGAGGCTAATATT 396
Query 347 TGGTCCAGATGCATCATCTCTATATCTATCAACCATCTTGATCCTTGGTCCGGCCGTAAT 406
|||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 397 TGGTCCTGATGCATCATCTCTATATCTATCAACCATCTTGATCCTTGGTCCTGCTGTAAT 456
Query 407 GTTCTTTGTCAAAATGTACACTAAAATGGCTGATCCTCGTACCAAGAATCCAAATCTCTG 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 457 GTTCTTTGTCAAAATGTACACTAAAATGGCTGATCCTCGTACCAAGAATCCAAATCTATG 516
Query 467 TATTCCAATTCTCTGTGTGTCTTGGATACTCACCATTTTGGATATATTTTTCCTCTTAAT 526
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 517 TATTCCAATTCTCTGTGTGTCTTGGATACTCACAATTTTGGATATATTTTTCCTCTTAAT 576
Query 527 GACATCTAGTAGAGATCCCGGGATTGTGCCAAGAAGTTTAAGGCCTCCGGAAACAGATGA 586
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 577 GACATCTAGTAGAGATCCCGGGATTGTGCCAAGAAGTTTTAGGCCTCCGGAAACCGATGA 636
Query 587 TGCACCGGATTCAACTACTCCGTCGTTGGAATGGGTTAGCGGTAGAACCCCAAATATAAG 646
||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||
Sbjct 637 TGCACCGGATTCAACTACTCCATCGATGGAATGGGTTAGCGGTAGAACCCCTAATATAAG 696
Query 647 AATACCGA-GGGTTAAAGATGTAACCGTTAATGGACATACCGTAAAAGTGAAATTCTGTG 705
|||||| | |||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 697 AATACC-ACGGGTCAAAGATGTAACTGTTAATGGACATACCGTAAAAGTGAAATTCTGTG 755
Query 706 ATACTTGTTTGCTTTACCGTCCTCCTAGAGCTTCTCATTGTTCCATATGCAACAACTGTG 765
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 756 ACACTTGTTTGCTTTACCGTCCACCTAGAGCTTCTCATTGTTCCATATGCAACAACTGTG 815
Query 766 TCCAGAGATTCGATCATCACTGCCCTTGGGTTGGCCAGTGTATTGGAGTGCGAAATTACC 825
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 816 TCCAGAGATTTGATCATCACTGCCCTTGGGTTGGCCAGTGCATTGGAGTGCGAAATTACC 875
Query 826 GGTTCTTCTTCATGTTCATATCAACATCTACCACTTTGTGCATATATGTGTTTGCTTTTT 885
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||
Sbjct 876 GGTTCTTCTTCATGTTCATATCAACATCAACCACTCTGTGCATATATGTGTTTGCCTTTT 935
Query 886 CTTGGTTGAACATATTTCAAAGACATATGGATGAAAAGATTAGCATCTGGAAAGCTATAT 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 936 CTTGGTTGAACATATTTCAAAGACATATGGATGAAAAGATTAGCATCTGGAAAGCTATAT 995
Query 946 CCAAAGATGTTCTATCGGATATTCTCATAGTTTACTGCTTCATTACTGTTTGGTTTGTTG 1005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 996 CCAAAGATGTTCTATCGGATATTCTCATAGTTTACTGCTTCATTACTGTTTGGTTTGTTG 1055
Query 1006 GAGGACTCACTATATTTCATTCCTATCTCATCTGCACTAACCAGGTGACCACTTATGAGA 1065
|||||||||| ||||||||||||||||||||||| ||||||||| || ||||||||||
Sbjct 1056 GAGGACTCACAATATTTCATTCCTATCTCATCTGTACTAACCAG---ACGACTTATGAGA 1112
Query 1066 ATTTCCGATACCGTTATGATAAGAAGGAGAATCCATACAACAAGGGAATTTTAGGGAACA 1125
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1113 ATTTCCGATACCGTTATGATAAGAAGGAGAATCCATACAACAAAGGAATTTTGGGGAACA 1172
Query 1126 TATGGGAGATATTTCTGTCTAAGATTCCTCCATCAATGAACAAGTTTAGATCATTTGTGA 1185
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1173 TATGGGAAATATTTCTGTCTAAGATTCCTCCATCAATGAACAAGTTTAGATCATTTGTCA 1232
Query 1186 AGGAAGAGGATTATATGATGATG--G-TTGAAACTCCTACTTCAAATCTAGGTGAAAGTC 1242
||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1233 AGGAAGAAGATTATATGATGATGATGGTTGAAACTCCTACTTCAAATCTAGGTGAAAGTC 1292
Query 1243 TAGTCAGCTCGAAAGAGAAGATCGATATCGAAATGGGAGGAGGAAGGATTGTTGATGAGA 1302
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1293 TAGTTAGCTCGAAAGAGAAGATTGATATCGAAATGGGAGGAGGAAGGATTGTTGATGAGA 1352
Query 1303 GTGGAAAGAGCTACTCTCTGCCTGAGATCCTCCGGAATCTAAACTATGAAGATCTCGAGG 1362
||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct 1353 GTGGAAAGAGCTACTCTCTACCTGAGATTCTCCGGAATCTAAACTATGAAGATCTTGAGG 1412
Query 1363 ATGATTGTGAGGAAGATGACTTGAAGGCTAAGGATCATCACCACCATCATCACCATCAAC 1422
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1413 ATGATTGTGAGGAAGATGACTTGAAGGCTAAGGATCATCACCACCACCATCACCATCAAC 1472
Query 1423 AT-AA--T---GAGGGAATCATCCCTCCTTTTGACCCtttttttACCAATGAGAATGGTA 1476
|| || | ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1473 ATCAACATAATGAGGGAATCATCCCTCCTTTTGACCCTTTTTTTACCAATGAGATTGGTA 1532
Query 1477 GTAACAAAGATGAGAGAAATGCAGAAGAATCAGGAGGATCTTCAAGTGATGATGAAGATG 1536
||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||
Sbjct 1533 GTAACAAAGATGAGAGAAATGGAGAAGAATCAGGAGGATCTTCAAGTGATGGTGAAAATA 1592
Query 1537 CAGGGAAACGCGTTCGGGT-T--GA--A-GATGAAGAGAAAGTGGAAGGGTATGAACGAA 1590
||||||||||||||||||| | || | |||||||||||||| ||||||||||||||||
Sbjct 1593 CAGGGAAACGCGTTCGGGTCTCAGATGAAGATGAAGAGAAAGTTGAAGGGTATGAACGAA 1652
Query 1591 ATTGGAATACAGATAAAGGTATGAATATAAACGCAGGATCTGAAGATGGAACAAGCTCTC 1650
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1653 ATTGGAGTACAGATAAAGGTATGAATATAAACGCAGGATCTGAAGATGGAGCAAGCTCTC 1712
Query 1651 CTGTATCCACTTCACCAATGCTTCGTAAATAGAGAGAAGGAAGGACTTGAAGCTGGAGAA 1710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1713 CTGTATCCACTTCACCAATGCTTCGTAAATAGAGAGAAGGAAGGACTTGAAGCTGGAGAA 1772
Query 1711 ATGGAGTTTGTGCTTTATCATTCTTTTAATTGTGTTTCATATAATTGTGG-aaaaaaaaT 1769
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 1773 ATGGAGTTTGTGCTTTATCATTCTTTTAATTCTGTTTCATATAATTGTGGGAAAAAAAAT 1832
Query 1770 CCGAGAAATAACAATCAT-TTAGGAC-TTCGATGGGTTTGAGCACTAGAttttttttttt 1827
|||| ||||||||||||| |||| | || | || ||||||||||||||||||||| |||
Sbjct 1833 CCGAAAAATAACAATCATCTTAGAAAATT-G-TGAGTTTGAGCACTAGATTTTTTTATTT 1890
Query 1828 tttt--ttAATCCTTTTTAGTTGTATTTATATATACCAGAATGGCTCATCTGGATATCAC 1885
|| || |||||||||||||||||||||||||||||||||| || | |||||||||
Sbjct 1891 TTAAAATTC-TCCTTTTTAGTTGTATTTATATATACCAGAATGG-TC-T--GGATATCAC 1945
Query 1886 CAGCATCACATATTTTATCTTCtttttt-tttttcccttttttGTTATAAAAAA-GATTT 1943
|||||||||||||||| ||| ||||||| ||||||| ||||||||||||||||| |||||
Sbjct 1946 CAGCATCACATATTTTCTCT-CTTTTTTATTTTTCC-TTTTTTGTTATAAAAAAAGATTT 2003
Query 1944 GGACCACGAATT-GTAACGTATA--CTGTTGTCGAAATTATTTCTC-TTATT--ATTGGT 1997
|||||||||||| |||||||||| ||||||||| |||||||| || ||||| ||||||
Sbjct 2004 GGACCACGAATTTGTAACGTATATACTGTTGTCGGAATTATTTTTCCTTATTTTATTGGT 2063
Query 1998 TGATTTTCAT 2007
||||||||||
Sbjct 2064 TGATTTTCAT 2073
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99447279645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5