BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486136 Length=2007 Score E Sequences producing significant alignments: (Bits) Value AT3G56930.1 | Symbols: | DHHC-type zinc finger family protein ... 2898 0.0 > AT3G56930.1 | Symbols: | DHHC-type zinc finger family protein | chr3:21073495-21076314 FORWARD LENGTH=2073 Length=2073 Score = 2898 bits (1569), Expect = 0.0 Identities = 1903/2050 (93%), Gaps = 80/2050 (4%) Strand=Plus/Plus Query 25 TTCGAGTGAGAGAGACGACAGCTTCCATT-TTCCTTGTCTCTCTCCCTCTCGAACTACAA 83 ||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||| Sbjct 37 TTCGAGTGAGAGAGACGACAGCTTCCATTATCCCCTGTCTCTCTCCCTCTCGAACTACAA 96 Query 84 ATCAAATCCGAGTG-TTTGAAATTGTTAAtc----t-tt------------agattttgt 125 ||||||| |||||| ||| | |||||||||| | || ||||||||| Sbjct 97 ATCAAATTCGAGTGTTTTCATATTGTTAATCTTTTTCTTCAAGGAAAGAAGAGATTTTGT 156 Query 126 tttccgtttctgggggtttttcttgattttgatctctgatctgatctgatCATCATTGTC 185 |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| Sbjct 157 TTTCCGTTTCTGGGGGTTTTTCTTGATTCTGATCTCTGATCTGATCTCATCATCATTGTC 216 Query 186 CATGGATTCTCCGATGGGTTTCTGATTCTGGGTTCTTCCAAATTTCTTCACTTCTGGAG- 244 | ||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||| Sbjct 217 CGTGGATTCTCCGATGGGTTTCTGATTGTGGGTTCTTTCAAATTTCTTCACTTTTGGAGC 276 Query 245 -------CT-T-T-TC-------TT-CCTCAGCTATGGCTTGGAATGAGACCAAACTCAA 286 || | | || || |||||||||||||||||||||||||||||||||| Sbjct 277 TTTTCTTCTCTCTGTCTTTTGTTTTCCCTCAGCTATGGCTTGGAATGAGACCAAACTCAA 336 Query 287 GAGGCTCTATCAAGTTTGGAGGGGAAGCAATAAATTTCTATGTGGCGGGAGGTTAATCTT 346 ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| || Sbjct 337 GAGGCTCTATCAAGTTTGGAGAGGAAGCAATAAATTTCTATGTGGCGGGAGGCTAATATT 396 Query 347 TGGTCCAGATGCATCATCTCTATATCTATCAACCATCTTGATCCTTGGTCCGGCCGTAAT 406 |||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 397 TGGTCCTGATGCATCATCTCTATATCTATCAACCATCTTGATCCTTGGTCCTGCTGTAAT 456 Query 407 GTTCTTTGTCAAAATGTACACTAAAATGGCTGATCCTCGTACCAAGAATCCAAATCTCTG 466 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 457 GTTCTTTGTCAAAATGTACACTAAAATGGCTGATCCTCGTACCAAGAATCCAAATCTATG 516 Query 467 TATTCCAATTCTCTGTGTGTCTTGGATACTCACCATTTTGGATATATTTTTCCTCTTAAT 526 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 517 TATTCCAATTCTCTGTGTGTCTTGGATACTCACAATTTTGGATATATTTTTCCTCTTAAT 576 Query 527 GACATCTAGTAGAGATCCCGGGATTGTGCCAAGAAGTTTAAGGCCTCCGGAAACAGATGA 586 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 577 GACATCTAGTAGAGATCCCGGGATTGTGCCAAGAAGTTTTAGGCCTCCGGAAACCGATGA 636 Query 587 TGCACCGGATTCAACTACTCCGTCGTTGGAATGGGTTAGCGGTAGAACCCCAAATATAAG 646 ||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||| Sbjct 637 TGCACCGGATTCAACTACTCCATCGATGGAATGGGTTAGCGGTAGAACCCCTAATATAAG 696 Query 647 AATACCGA-GGGTTAAAGATGTAACCGTTAATGGACATACCGTAAAAGTGAAATTCTGTG 705 |||||| | |||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 697 AATACC-ACGGGTCAAAGATGTAACTGTTAATGGACATACCGTAAAAGTGAAATTCTGTG 755 Query 706 ATACTTGTTTGCTTTACCGTCCTCCTAGAGCTTCTCATTGTTCCATATGCAACAACTGTG 765 | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 756 ACACTTGTTTGCTTTACCGTCCACCTAGAGCTTCTCATTGTTCCATATGCAACAACTGTG 815 Query 766 TCCAGAGATTCGATCATCACTGCCCTTGGGTTGGCCAGTGTATTGGAGTGCGAAATTACC 825 |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 816 TCCAGAGATTTGATCATCACTGCCCTTGGGTTGGCCAGTGCATTGGAGTGCGAAATTACC 875 Query 826 GGTTCTTCTTCATGTTCATATCAACATCTACCACTTTGTGCATATATGTGTTTGCTTTTT 885 |||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||| Sbjct 876 GGTTCTTCTTCATGTTCATATCAACATCAACCACTCTGTGCATATATGTGTTTGCCTTTT 935 Query 886 CTTGGTTGAACATATTTCAAAGACATATGGATGAAAAGATTAGCATCTGGAAAGCTATAT 945 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 936 CTTGGTTGAACATATTTCAAAGACATATGGATGAAAAGATTAGCATCTGGAAAGCTATAT 995 Query 946 CCAAAGATGTTCTATCGGATATTCTCATAGTTTACTGCTTCATTACTGTTTGGTTTGTTG 1005 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 996 CCAAAGATGTTCTATCGGATATTCTCATAGTTTACTGCTTCATTACTGTTTGGTTTGTTG 1055 Query 1006 GAGGACTCACTATATTTCATTCCTATCTCATCTGCACTAACCAGGTGACCACTTATGAGA 1065 |||||||||| ||||||||||||||||||||||| ||||||||| || |||||||||| Sbjct 1056 GAGGACTCACAATATTTCATTCCTATCTCATCTGTACTAACCAG---ACGACTTATGAGA 1112 Query 1066 ATTTCCGATACCGTTATGATAAGAAGGAGAATCCATACAACAAGGGAATTTTAGGGAACA 1125 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 1113 ATTTCCGATACCGTTATGATAAGAAGGAGAATCCATACAACAAAGGAATTTTGGGGAACA 1172 Query 1126 TATGGGAGATATTTCTGTCTAAGATTCCTCCATCAATGAACAAGTTTAGATCATTTGTGA 1185 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1173 TATGGGAAATATTTCTGTCTAAGATTCCTCCATCAATGAACAAGTTTAGATCATTTGTCA 1232 Query 1186 AGGAAGAGGATTATATGATGATG--G-TTGAAACTCCTACTTCAAATCTAGGTGAAAGTC 1242 ||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct 1233 AGGAAGAAGATTATATGATGATGATGGTTGAAACTCCTACTTCAAATCTAGGTGAAAGTC 1292 Query 1243 TAGTCAGCTCGAAAGAGAAGATCGATATCGAAATGGGAGGAGGAAGGATTGTTGATGAGA 1302 |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1293 TAGTTAGCTCGAAAGAGAAGATTGATATCGAAATGGGAGGAGGAAGGATTGTTGATGAGA 1352 Query 1303 GTGGAAAGAGCTACTCTCTGCCTGAGATCCTCCGGAATCTAAACTATGAAGATCTCGAGG 1362 ||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct 1353 GTGGAAAGAGCTACTCTCTACCTGAGATTCTCCGGAATCTAAACTATGAAGATCTTGAGG 1412 Query 1363 ATGATTGTGAGGAAGATGACTTGAAGGCTAAGGATCATCACCACCATCATCACCATCAAC 1422 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1413 ATGATTGTGAGGAAGATGACTTGAAGGCTAAGGATCATCACCACCACCATCACCATCAAC 1472 Query 1423 AT-AA--T---GAGGGAATCATCCCTCCTTTTGACCCtttttttACCAATGAGAATGGTA 1476 || || | ||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1473 ATCAACATAATGAGGGAATCATCCCTCCTTTTGACCCTTTTTTTACCAATGAGATTGGTA 1532 Query 1477 GTAACAAAGATGAGAGAAATGCAGAAGAATCAGGAGGATCTTCAAGTGATGATGAAGATG 1536 ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| || Sbjct 1533 GTAACAAAGATGAGAGAAATGGAGAAGAATCAGGAGGATCTTCAAGTGATGGTGAAAATA 1592 Query 1537 CAGGGAAACGCGTTCGGGT-T--GA--A-GATGAAGAGAAAGTGGAAGGGTATGAACGAA 1590 ||||||||||||||||||| | || | |||||||||||||| |||||||||||||||| Sbjct 1593 CAGGGAAACGCGTTCGGGTCTCAGATGAAGATGAAGAGAAAGTTGAAGGGTATGAACGAA 1652 Query 1591 ATTGGAATACAGATAAAGGTATGAATATAAACGCAGGATCTGAAGATGGAACAAGCTCTC 1650 |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1653 ATTGGAGTACAGATAAAGGTATGAATATAAACGCAGGATCTGAAGATGGAGCAAGCTCTC 1712 Query 1651 CTGTATCCACTTCACCAATGCTTCGTAAATAGAGAGAAGGAAGGACTTGAAGCTGGAGAA 1710 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1713 CTGTATCCACTTCACCAATGCTTCGTAAATAGAGAGAAGGAAGGACTTGAAGCTGGAGAA 1772 Query 1711 ATGGAGTTTGTGCTTTATCATTCTTTTAATTGTGTTTCATATAATTGTGG-aaaaaaaaT 1769 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| Sbjct 1773 ATGGAGTTTGTGCTTTATCATTCTTTTAATTCTGTTTCATATAATTGTGGGAAAAAAAAT 1832 Query 1770 CCGAGAAATAACAATCAT-TTAGGAC-TTCGATGGGTTTGAGCACTAGAttttttttttt 1827 |||| ||||||||||||| |||| | || | || ||||||||||||||||||||| ||| Sbjct 1833 CCGAAAAATAACAATCATCTTAGAAAATT-G-TGAGTTTGAGCACTAGATTTTTTTATTT 1890 Query 1828 tttt--ttAATCCTTTTTAGTTGTATTTATATATACCAGAATGGCTCATCTGGATATCAC 1885 || || |||||||||||||||||||||||||||||||||| || | ||||||||| Sbjct 1891 TTAAAATTC-TCCTTTTTAGTTGTATTTATATATACCAGAATGG-TC-T--GGATATCAC 1945 Query 1886 CAGCATCACATATTTTATCTTCtttttt-tttttcccttttttGTTATAAAAAA-GATTT 1943 |||||||||||||||| ||| ||||||| ||||||| ||||||||||||||||| ||||| Sbjct 1946 CAGCATCACATATTTTCTCT-CTTTTTTATTTTTCC-TTTTTTGTTATAAAAAAAGATTT 2003 Query 1944 GGACCACGAATT-GTAACGTATA--CTGTTGTCGAAATTATTTCTC-TTATT--ATTGGT 1997 |||||||||||| |||||||||| ||||||||| |||||||| || ||||| |||||| Sbjct 2004 GGACCACGAATTTGTAACGTATATACTGTTGTCGGAATTATTTTTCCTTATTTTATTGGT 2063 Query 1998 TGATTTTCAT 2007 |||||||||| Sbjct 2064 TGATTTTCAT 2073 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 99447279645 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5