BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486140
Length=861
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56970.1 | Symbols: BHLH038, ORG2 | basic helix-loop-helix (... 1153 0.0
AT3G56980.1 | Symbols: BHLH039, ORG3 | basic helix-loop-helix (... 721 0.0
> AT3G56970.1 | Symbols: BHLH038, ORG2 | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein | chr3:21084110-21085150
REVERSE LENGTH=912
Length=912
Score = 1153 bits (624), Expect = 0.0
Identities = 738/793 (93%), Gaps = 8/793 (1%)
Strand=Plus/Plus
Query 22 CTTGTCCTTGATTAAGGAAAAAATGTGTGCATTAGTCCCTCCATTGTTCCCAAACTTCGG 81
|||||||||||||||| ||||||||||||||||||||||| |||| ||| ||||||||||
Sbjct 35 CTTGTCCTTGATTAAGCAAAAAATGTGTGCATTAGTCCCTTCATTTTTCACAAACTTCGG 94
Query 82 TTGGCCGTTGACGGGA-CAGTGCGAAAGCTATTACGGTGGCGGAGATAACCTTAATAACG 140
|||||||| || | | || | ||||||||||||||||| |||||||||||| |||||||
Sbjct 95 TTGGCCGTCAAC-GAATCAATACGAAAGCTATTACGGTGCCGGAGATAACCTAAATAACG 153
Query 141 GCACATTTCTTGATTTTCCGGTACCACCGACTTATGGAGTACTGACTCATCATCAGAACA 200
||||||||||||| || ||||||||| ||||||| || | |||||||||||||||| |
Sbjct 154 GCACATTTCTTGAATTGACGGTACCACAGACTTAT-GA--AGTGACTCATCATCAGAATA 210
Query 201 GCTTGGAAGTATCTGTTTCGTCAGAAGGAAATGAGATAGCCAACAATCCGGTCGTGGCCA 260
|||||| |||||||||||||||||||||||||||||||| |||||||||||| |||| ||
Sbjct 211 GCTTGGGAGTATCTGTTTCGTCAGAAGGAAATGAGATAGACAACAATCCGGTTGTGGTCA 270
Query 261 AGAAGCTTAATCACAATGCTAGTGAACGTGACCGTCGCAAGAAGATCAACTCTTTGTTCT 320
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 271 AGAAGCTTAATCACAATGCTAGTGAACGTGACCGACGCAAGAAGATCAACACTTTGTTCT 330
Query 321 CATCTCTCCGTTCATGTCTTCCAGTTTCCGATCAATCGAAGAAGCTAAGTATTCCTGAAA 380
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 331 CATCTCTCCGTTCATGTCTTCCAGCTTCTGATCAATCGAAGAAGCTAAGTATTCCTGAAA 390
Query 381 CGGTTTCGAAGAGCTTAAAGTACATACCAGAGCTGCAACAGCAAGTGAAGAAGCTACTAC 440
||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 391 CGGTTTCAAAGAGCTTAAAGTACATACCAGAGCTGCAACAGCAAGTGAAGAGGCTAATAC 450
Query 441 AAAAGAAGGAAGAACTTTTGGTTCGAGTGTCAGGTCATCGAGACTTTGAAATTTACGATA 500
|||||||||||||| ||||||| ||||| || ||||| |||||||||| |||||||||
Sbjct 451 AAAAGAAGGAAGAAATTTTGGTACGAGTATCGGGTCAAAGAGACTTTGAGCTTTACGATA 510
Query 501 AGCAGCAATCAAAGGCGGTCGCTAGTTATCTCTCAACAGTTTCTGCCACTAGGCTTGGTG 560
|||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 511 AGCAGCAACCAAAGGCGGTCGCGAGTTATCTCTCAACGGTTTCTGCCACTAGGCTTGGTG 570
Query 561 ACAACGAAGTGATGGTCCAAATCTCATCGTCCAAGATTCATAACTTTTCGATATCAAATG 620
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 571 ACAACGAAGTGATGGTCCAAGTCTCATCGTCCAAGATTCATAACTTTTCGATATCAAATG 630
Query 621 TGTTGGGTGGTATAGAGGAAGATGGGGTTGTTCTTGTGGATGTTTCATCTTCAAGATCTC 680
|||||||||| ||||| ||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 631 TGTTGGGTGGGATAGAAGAAGATGGGTTTGTTCTTGTGGATGTTTCATCATCAAGATCTC 690
Query 681 AAGGAGAGAGGCTCTTCTACACTTTGCATCTTCAAGTAGAGAATATGGATGACTATTACA 740
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 691 AAGGAGAGAGGCTCTTCTACACTTTGCATCTTCAAGTGGAGAATATGGATG---ATTACA 747
Query 741 AGATTAATTGTGAAGAGTTAAGTGAAAGGATGTTGTACTTGTACGAGAAATGTGAAAACT 800
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 748 AGATTAATTGCGAAGAATTAAGTGAAAGGATGTTGTACTTGTACGAGAAATGTGAAAACT 807
Query 801 CGTTTAACTAGGT 813
|||||||||||||
Sbjct 808 CGTTTAACTAGGT 820
> AT3G56980.1 | Symbols: BHLH039, ORG3 | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein | chr3:21086546-21087494
REVERSE LENGTH=843
Length=843
Score = 721 bits (390), Expect = 0.0
Identities = 653/777 (84%), Gaps = 29/777 (4%)
Strand=Plus/Plus
Query 44 ATGTGTGCATTAGTCCCTCCATTGTTCCCAAACTTCGGTTGGCCGTTGACGGGACAGTGC 103
|||||||||||||| ||||||||||| |||||||| || ||||| | |||||| ||| |
Sbjct 1 ATGTGTGCATTAGTACCTCCATTGTTTCCAAACTTTGGGTGGCCATCAACGGGAGAGTAC 60
Query 104 GAAAGCTATTACGGT-GGCGGAGATAACCTTAATAACGGCACATTTCTTGATTTTCCGGT 162
|| ||||| ||| | | |||||||| ||| || |||||| |||||||||||||||||
Sbjct 61 GACAGCTACTAC-CTCGCCGGAGATATCCTCAACAACGGCGGGTTTCTTGATTTTCCGGT 119
Query 163 ACC--A-CCGACTTATGGA---G-T--A-C--TGACTCATCATCAGAACAGC-TTGGAAG 209
||| | |||||||||| | | | | ||||||| |||||||| ||| |||| |
Sbjct 120 ACCGGAGGAGACTTATGGAGCTGTTACAGCGGTGACTCAACATCAGAATAGCTTTGG-TG 178
Query 210 TATCTGTTTCGTCAGAAGGAAATGAGATAGCCAACAATCCGGTCGTGGCCAAGAAGCTTA 269
| ||||||||||| || |||||||| |||| |||||||||||| || | |||||||||||
Sbjct 179 TTTCTGTTTCGTCGGAGGGAAATGAAATAGACAACAATCCGGTGGTCGTCAAGAAGCTTA 238
Query 270 ATCACAATGCTAGTGAACGTGACCGTCGCAAGAAGATCAACTCTTTGTTCTCATCTCTCC 329
|||||||||||||||| ||||||||||||| ||| || ||||||||||||||||||||||
Sbjct 239 ATCACAATGCTAGTGAGCGTGACCGTCGCAGGAAAATTAACTCTTTGTTCTCATCTCTCC 298
Query 330 GTTCATGTCTTCCAGTTTCCGATCAATCGAAGAAGCTAAGTATTCCTGAAACGG-TT-TC 387
||||||||||||| | || | ||||||||||||||||| ||||||| |||| || ||
Sbjct 299 GTTCATGTCTTCCTGCCTCTGGCCAATCGAAGAAGCTAAGCATTCCTGCGACGGTTTCTC 358
Query 388 GAAGAGCTTAAAGTACATACCAGAGCTGCAACAGCAAGTGAAGAAGCTACTACAAAAGAA 447
| | ||||| ||||||||||||||||||||| ||||||||||||||||| || |||||||
Sbjct 359 G-A-AGCTTGAAGTACATACCAGAGCTGCAAGAGCAAGTGAAGAAGCTAATAAAAAAGAA 416
Query 448 GGAAGAACTTTTGGTTCGAGTGTCAGGTCATCGAGACTTTGAAAT-TTACGATAAGCAGC 506
|||||| || ||||| | | | |||||||| || || || ||| ||||| ||||||||
Sbjct 417 GGAAGAGCTCTTGGTGCAAATTTCAGGTCAAAGAAACACTG-AATGTTACGTTAAGCAGC 475
Query 507 AATCAAAGGCGGTCGCTAGTTATCTCTCAACAGTTTCTGCCACTAGGCTTGGTGACAACG 566
| ||||||| ||||| | |||| |||| || |||||||| |||||||||||||||||||
Sbjct 476 CACCAAAGGCCGTCGCGAATTATATCTCGACCGTTTCTGCGACTAGGCTTGGTGACAACG 535
Query 567 AAGTGATGGTCCAAATCTCATCGTCCAAGATTCATAACTTTTCGATATCAAATGTGTTGG 626
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 536 AAGTGATGGTCCAAATCTCATCGTCCAAGATTCATAACTTTTCGATATCTAATGTTTTAA 595
Query 627 GTGG-TATAGAGGAAGATGGGGTTGTTCTTGTGGATGTTTCATCTTCAAGATCTCAAGGA 685
|||| | |||| |||||| || ||||||||||||| | ||||||||||| |||||||||
Sbjct 596 GTGGGT-TAGAAGAAGATAGGTTTGTTCTTGTGGACATGTCATCTTCAAGGTCTCAAGGA 654
Query 686 GAGAGGCTCTTCTACACTTTGCATCTT-CAAGTAGAGAATATGGATGACTATTACAAGAT 744
|| ||||| ||||||||||||||| || ||||| ||||| || || | |||||||| |
Sbjct 655 GAAAGGCTTTTCTACACTTTGCAT-TTACAAGTGGAGAAGATTGAA-A--ATTACAAGCT 710
Query 745 TAATTGTGAAGAGTTAAGTGAAAGGATGTTGTACTTGTACGAGAAATGTGAAAACTC 801
||||| |||||||||||| | ||||||||||||||||| ||| |||||| ||||||
Sbjct 711 GAATTGCGAAGAGTTAAGTCAGAGGATGTTGTACTTGTATGAGGAATGTGGAAACTC 767
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41995746892
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5