BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486142
Length=2347
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56990.1 | Symbols: EDA7 | embryo sac development arrest 7 |... 3406 0.0
> AT3G56990.1 | Symbols: EDA7 | embryo sac development arrest 7
| chr3:21088257-21092061 REVERSE LENGTH=2322
Length=2322
Score = 3406 bits (1844), Expect = 0.0
Identities = 2105/2229 (94%), Gaps = 25/2229 (1%)
Strand=Plus/Plus
Query 1 TTTTGACTTCAAATTTTGCGTTTCCTCTGCAACTCGCCGTCAAGGGTGGAAGAATTAGGG 60
||||| |||||| |||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 2 TTTTGGCTTCAATTTTTGCGTTTTCTCTGCAACTCGCCGTCAAGGGTAGAAGAATTAGGG 61
Query 61 TTTCCTGTTCTATCTAACCTGCTTGTAGATGGCGTCTTATGGAGACAGACTGAAGTCGAC 120
||||||||| | ||| ||||||| ||||| ||||||||||||| ||||||||||||||
Sbjct 62 GTTCCTGTTC--T-TAA-CTGCTTGAAGATGACGTCTTATGGAGATAGACTGAAGTCGAC 117
Query 121 CTCCATTAATGGAGTTAAGTTATACCATGTTTCTTCTGCTCCCAATGTTGCGACTTGGCT 180
||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||
Sbjct 118 CTCCATTAATGGAGTTAAGTTATACAATGTTTCTTCTGCTCCCAATGTTCCTACTTGGCT 177
Query 181 TAATCCTAAGAAGCAACGAGCTCTCCGCAAAAACCCTCATTATATGCAAAGAGTGGAGCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TAATCCTAAGAAGCAACGAGCTCTCCGCAAAAACCCTCATTATATGCAAAGAGTGGAGCT 237
Query 241 GATTCAGGAGTTGAAGTTTGAGACTGCCACTACTAGAATCAAAGCGACTCCAGACGGAGA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GATTCAGGAGTTGAAGTTTGAGACTGCCACTACTAGAATCAAAGCGACTCCAGACGGAGA 297
Query 301 GTATCTGATTGCTTCAGGCATATATCCACCTCAGGTCAAAGTTTATGAGCTAGGTCAGCT 360
|||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||
Sbjct 298 GTATCTGATTGCTTCAGGCATATATCCACCACAGGTAAAAGTTTATGAGCTAAATCAGCT 357
Query 361 TGCTTTGAAGTTTGAGAGGCATTTGGACTCGGAGATAGTTGATTTCGAGATATTGGATGA 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 358 TGCTTTGAAGTTTGAGAGGCATTTGGACTCGGAAATAGTTGATTTCGAGATATTGGATGA 417
Query 421 TGACTTCTCAAAGCTTGCCTTCTTATGTGCTGATCGTTCTATTCAACT-ACACGCCAAAT 479
||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||
Sbjct 418 TGACTTCTCAAAGCTTGCCTTCTTATGTGCTGATCGTTCTATT-AATTTACACGCCAAAT 476
Query 480 ACGGGAAACACCACACTTTACGAATTCCAAGGATGGGGAGAGATATGACATATGATCCCT 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 477 ACGGGAAACACCACACTTTACGAATTCCAAGGATGGGGAGAGATATGACATATGATTCCT 536
Query 540 GGTCTTGTGATCTTCTTTGCGCTGCTTCCTCACCTGATCTATACAGAATCAATTTGGAGC 599
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 537 GGTCTTGTGATCTTCTTTGCGCTGCTTCCTCACCTGATCTATATAGAATCAATTTGGAGC 596
Query 600 AGGGAAGATTTCTCTCTCCTCTCAGCACTCAATCCCCAGCCCTTAATGTTGTTTCTCGAA 659
||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 597 AGGGAAGATTTCTTTCTCCTCTCAGCACTCAATCCCCAGCGCTTAATGTCGTTTCTCGAA 656
Query 660 GCAACCTCCATGGATTAGTTGCTTGTGGTGGTGAGGATGGTGCTGTGGAATTTTTTGATA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GCAACCTCCATGGATTAGTTGCTTGTGGTGGTGAGGATGGTGCTGTGGAATTTTTTGATA 716
Query 720 TGAGAATGAAATCATCTGCTGCTAGAATTAACGCGGTCACACATGGTGGTGATGCTGCTG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TGAGAATGAAATCATCTGCTGCTAGAATTAACGCGGTCACACATGGTGGTGATGCTGCTG 776
Query 780 CGGAGGTTACTGCTATCGAGTTTGATGACAGTGAAGGTCTTCAAGTAGCTGTCGGGAGTA 839
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 CGGAGGTTACTGCTATAGAGTTTGATGACAGTGAAGGTCTTCAAGTAGCTGTCGGGAGTA 836
Query 840 GTGCGGGAAAGGTATTCATATACGACTTGCGTACTTCAACTCCAATAAGAGTGAAGGATC 899
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 837 GCGCGGGAAAGGTATTCATATACGACTTGCGTACTTCAACTCCCATAAGAGTGAAGGATC 896
Query 900 ATATGTACGAGAGCCCGATTTTGAGTATAAAGTGGCAACGAACTCTTAATACTCAACAAC 959
| |||||||||||||| ||||||| ||| ||||||||||| |||||||||||||||||||
Sbjct 897 ACATGTACGAGAGCCCAATTTTGAATATTAAGTGGCAACGGACTCTTAATACTCAACAAC 956
Query 960 CTAAGTTGATTACTACCGACAAACACATTGTTAGAATATGGGATCCAAACACGGGAGAAG 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 CTAAGTTGATTACTACCGACAAACACATTGTTAGAATATGGGATCCAAACACGGGAGAAG 1016
Query 1020 GTATGACCAGCATTGAACCGACTCAAGGAGGAATAAACGACATTTGTGTGTTCCGTGGAA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GTATGACCAGCATTGAACCGACTCAAGGAGGAATAAACGACATTTGTGTGTTCCGTGGAA 1076
Query 1080 GCGGACTTATGCTTCTTGCTTTAGACTCTAGCCTAATTCCATCTTACTTCATACCTGAAC 1139
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1077 GCGGACTTATGCTTCTTGCTTTAGACTCTAGCCTAATCCCATCTTACTTCATACCTGAAC 1136
Query 1140 TCGGTCCTGCCCCCAAATGGTGTTCTCCTCTTGAAAATCTAACGGAAGAGTTGGAGGAAA 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TCGGTCCTGCCCCCAAATGGTGTTCTCCTCTTGAAAATCTAACGGAAGAGTTGGAGGAAA 1196
Query 1200 GTGGACAGACAACTATTTATGATAATTACAAATTCGTGACAAAGGAAGATCTGGAGAAGT 1259
||| |||||||||||||||||||||||||||||| || ||| |||||||||||||||||
Sbjct 1197 GTGCACAGACAACTATTTATGATAATTACAAATTTTTGGCAATGGAAGATCTGGAGAAGT 1256
Query 1260 TGCAGCTAACTCATTTGATTGGAACAGATCTTTTGAAAGCA-CAAATGCATGGATATTTT 1318
||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct 1257 TGCAGCTAACTCATTTGATTGGAACAGATCTTTTGAAAGCATCTA-TGCATGGATATTTT 1315
Query 1319 ATGAATCACCATTTGTACAAAAAGGCTTTAGCAGTGGCTGAACCTTTTGCATATGATGCT 1378
|| ||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 1316 ATTAATTACCATTTGTACAAAAAGGCTTTAGCAGTGATTGAACCTTTTGCATTTGATGAT 1375
Query 1379 TACTTAGAACGTAAGAAGCAAGAGAAGTTAGAAGCGAACCGTACACAGAGAATCACAAAG 1438
||||||||||||| |||||||||||||||||||| | | ||||| ||||||||||||||
Sbjct 1376 TACTTAGAACGTAGGAAGCAAGAGAAGTTAGAAGAGCAGCGTACGCAGAGAATCACAAAA 1435
Query 1439 AAGAGAAGGTTGCCAAAGGTTAACCGAGAACTCGCAGCAAGGCTTCATGGGGACGATTCG 1498
|||||| |||||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 1436 AAGAGACGGTTGCCAAAGGTTAACCGAGACCTTGCAGCAAGGCTTCATGGGGACGAATCA 1495
Query 1499 GAGGAGGAGAATAAAACTGCCGAGGATGAGGAGGCCGCCAAGAAAGTG-TCGAAAAAGAA 1557
|||||||| ||||||||||||||||||| ||||||| ||||||||||| | |||||||||
Sbjct 1496 GAGGAGGAAAATAAAACTGCCGAGGATGGGGAGGCCACCAAGAAAGTGCT-GAAAAAGAA 1554
Query 1558 GAAACCGATACTTAGTGGCGAGAATTTCGCAGATGGTCGGTTTAGTTCGATGTTCCAAAA 1617
|||||| ||||||| || |||| |||||| ||||||||||||| ||||||||||||||||
Sbjct 1555 GAAACCCATACTTACTGACGAGCATTTCGTAGATGGTCGGTTTGGTTCGATGTTCCAAAA 1614
Query 1618 TCCGGACTACCAAATTGATCCAGAA-TCATATGAATATGGTGTCCTACACCCTGTTGCTT 1676
|||||||| |||||||||| || | ||||||||||||||||||||||||||||||||||
Sbjct 1615 TCCGGACTTCCAAATTGATA-AGGACTCATATGAATATGGTGTCCTACACCCTGTTGCTT 1673
Query 1677 CTTCGAAGAAGCAACCTTCTTTGTTAGATGAACACTTTGAAGCTGTATCGGATGATGATG 1736
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
Sbjct 1674 CTTCGAAGAAGCAACCTTCTCTGTTAGATGAACACTTTGAAGCTGTATCAGATGATGACG 1733
Query 1737 AGAACAGTGATTCTGATGCATCACTGGCTTCAGATGACGAGGCCGACGATGGAGACGCAA 1796
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1734 AGAACAGTGATTCTGATGCATCACAGCCTTCAGATGACGAGGCCGACGATGGAGACGCAA 1793
Query 1797 CTAGGCCAAGCAAGAAAGCAAGAATTCCGAAGTTGTTTGAAGTGAAAGATGAGCGCCATG 1856
||||||||||||||||||| |||| ||||||||||| |||||||||||||||||| ||||
Sbjct 1794 CTAGGCCAAGCAAGAAAGCGAGAACTCCGAAGTTGTATGAAGTGAAAGATGAGCGGCATG 1853
Query 1857 CCGCAGCTTTTTACAACCGCACTTCACTGGCTAAAGAAGATAGTCTTCCTATGGGCGAGC 1916
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1854 CCGCAGCTTATCACAACCGCACTTCACTGGCTAAAGAAGATAGTCTTCCTATGGGCGAGC 1913
Query 1917 GTGTCAAGGCTATAGAGAACCGGCGTGGCAACTTTGGAGGCTCGAAAGATATCAAATTCG 1976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1914 GTGTCAAGGCTATAGAGAACCGGCGTGGCAACTTTGGAGGCTCGAAAGATATCAAATTCG 1973
Query 1977 GTCCTGGAGGGTCTCGGGAGATTTCCTTCAAGGCGAGAAGCTCATCGAAA-TACAAAGAA 2035
|||||||||| || |||||| |||| |||||||||||| | ||||| ||| |||||||||
Sbjct 1974 GTCCTGGAGGATCACGGGAGTTTTCTTTCAAGGCGAGAGGGTCATC-AAAGTACAAAGAA 2032
Query 2036 GACAGAGGAGATAGAGACGATGAGGATGAAGATGGGCAAAGAAACAGGAGGAGAGGAGTT 2095
|| ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 2033 GA---------TAGAGACGATGAGTATGAAGATGGGCAAAGAAACAAGAGGAGAGGAGTT 2083
Query 2096 CAGTCTCTTGGACTGAAATCAGATAA-Tgttagaggcggttttagagggagaggaggcgg 2154
||||||||||||||||||||| | || | ||||||||||||| ||||| |||||||| ||
Sbjct 2084 CAGTCTCTTGGACTGAAATCA-ACAAATATTAGAGGCGGTTTCAGAGGTAGAGGAGGTGG 2142
Query 2155 cggttttagagggagaggaggcggcggttcccggggaagaggaggTGGTGGTGGTTCCCG 2214
||||||||||||||||||||||||||||||||||||| ||| || |||||||| ||
Sbjct 2143 TGGTTTTAGAGGGAGAGGAGGCGGCGGTTCCCGGGGAAAAGGTGGCCGTGGTGGTGGGCG 2202
Query 2215 GGGAAGAGG 2223
||||||||
Sbjct 2203 TGGAAGAGG 2211
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116515464945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5