BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486143
Length=1135
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57000.1 | Symbols: | nucleolar essential protein-related |... 1672 0.0
> AT3G57000.1 | Symbols: | nucleolar essential protein-related
| chr3:21092268-21094297 FORWARD LENGTH=1201
Length=1201
Score = 1672 bits (905), Expect = 0.0
Identities = 1066/1141 (93%), Gaps = 21/1141 (2%)
Strand=Plus/Plus
Query 1 CTTTAACTTCGAATTAGGGTTTATCAGGATTCAGTCGCCTGCTCACTTGAATTTCTTCAC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 24 CTTTAACTTCGAATTAGGGTTTATCAGGATTCAGTCGCCTGCTCACTTGAATTTCTTCGC 83
Query 61 AAGCTCAAAAAGTTTAGCGAAATTTTTGAAGGAAGATGGTGAGGCCGTATGGGATTAAAG 120
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 84 AAGCTCAAAAAG-TT-CCGAAATTTTTGAAGGAAGATGGTGAGGCCGTATGGGATTAAAG 141
Query 121 TGAACAAGAGAAAGGAGAGA-ACAGGGAGGTATGATAAGGAAGAAGAAGAAGTAGAGGAA 179
|||||||||||||||||||| | || ||||||||||||||||||||| |||||||||||
Sbjct 142 TGAACAAGAGAAAGGAGAGAGA-AGAGAGGTATGATAAGGAAGAAGATGAAGTAGAGGAG 200
Query 180 CGACcaaagtttgagcaaaaacaaaaggcaagagaaagttcgaagaaagctaaaaaagaa 239
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 CAACCAAAGTTTGAGCAAAAACAAAAGGCAAGAGAAAGTTCGAAGAAAGCTAAAAAAGAA 260
Query 240 aTCACTTCAAGAGCAGAGGAAGATAATGAAGAGGAGGAAATAACTGAAGAAGTAACAGCA 299
| ||||||||||||||||||||||||||| ||||||||| |||||| |||| ||| |||
Sbjct 261 AGCACTTCAAGAGCAGAGGAAGATAATGACGAGGAGGAAGTAACTGTGGAAGCAACTGCA 320
Query 300 GCAGCGGCAGAGGATATTGTGGGAGGGATACCTATTGTCCTTAGTGCTCCTAACAGGGAA 359
||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 321 GCA---GCAGAGGATATTGTGGGAGGGATACCTATTGTCCTTAATGCTCCTAACAAGGAA 377
Query 360 AAGCCCGGTGTTGTTTTCGTGCTTGAGAAGGCCTCTCTTGAAGTTGCCAAAGTTGGAAAG 419
||| | || |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 AAGTCTGGCATTGTATTCGTGCTTGAGAAGGCCTCTCTTGAAGTTGCCAAAGTTGGAAAG 437
Query 420 ACTTACCAGCTACTGAACTCGGATGATCATGCTAATTTCTTGAGAAAGAACAACAGAAAT 479
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 438 ACTTACCAGCTACTGAACTCGGATGATCATGCTAATTTCTTGAAAAAGAATAACAGAAAT 497
Query 480 CCGGCTGATTACCGACCAGACATCACTCATCAGGCTCTTCTTATGATTTTGGATAGTCCG 539
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 498 CCGGCTGATTACCGACCAGACATTACTCATCAGGCGCTTCTTATGATTTTGGATAGTCCG 557
Query 540 GTTAATAAGGCTGGGAGGTTGAAAGCGGTATATGTTAGAACAGAAAAAGGTGTCCTTTTT 599
|||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 558 GTTAATAAAGCTGGGAGGTTGAAAGCTGTTTATGTTAGAACAGAAAAAGGTGTCCTTTTT 617
Query 600 GAAGTTAAGCCACATGTTCGTATACCAAGAACTTTCAAACGATTTGCTGGAATCATGTTG 659
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 618 GAAGTTAAGCCACATGTTCGTATACCAAGAACTTTCAAACGATTTGCCGGAATCATGTTG 677
Query 660 CAATTGCTACAAAAGCTGAGCATTTCTGCAGTTGGCAGCGGTGAGAAACTTCTACGGTGT 719
||| |||||||||||||||||||| |||||||| |||| ||||||| ||||||||||||
Sbjct 678 CAACTGCTACAAAAGCTGAGCATTACTGCAGTTAACAGCCGTGAGAAGCTTCTACGGTGT 737
Query 720 GTCAAGAACCCTATCGAAGAATATCATCTACCGGTTAACTCCCACAGAATAGGCTTCTCG 779
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 738 GTCAAGAACCCTATCGAAGAACATCATCTACCGGTTAACTCCCACAGAATAGGCTTCTCG 797
Query 780 CATAGCTCTGAAAAACTCGTCAATATGCAGAAACACCTAGCTACTATATCTGATGAT-AC 838
||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||| |
Sbjct 798 CATAGCTCTGAGAAACTCGTCAATATGCAGAAACACCTAGCTACTGTATGTGATGATGAT 857
Query 839 AGA--CACAGTTTTTGTGGTCGGCGCAATGGCACACGGGAAAATAGAGTGCGACTATATC 896
||| ||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||
Sbjct 858 AGAGACACAGTTTTTGTGGTAGGCGCAATGGCACACGGGAAAATAGACTGCAACTATATC 917
Query 897 GATGAGTTTTTGTCGATTTCAGGGTATCCATTGAGCGCAGCCTACTGTATCTCAAGAATC 956
||||| ||| ||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 918 GATGAATTTGTGTCGGTTTCAGAGTATCCATTGAGCGCAGCCTACTGTATCTCAAGAATC 977
Query 957 TGCGAGGCATTAGCAACAAATTGGAATATCATATAAA-GAATTATTATAAGGTCCTCTGT 1015
||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||| |||
Sbjct 978 TGCGAGGCATTAGCAACAAATTGGAATATTATATAAAAGAATGATTATAAGGTCCTTTGT 1037
Query 1016 TTTCCTCTCTACTGCTCTAATGAT-GGAACTACTTTAAGCTACAATGTTGTGATACACAT 1074
|||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||
Sbjct 1038 TTTCCTCTCTACTGCTCTAATGGTAGGAACTACTTTAAGCTATGTTGTTGTGATACACAT 1097
Query 1075 TGTTCATCTACTATCGAGTTTTAATAACTTATAACTTTTCGTTTGAAATTTTGACTCCAC 1134
|||| |||||||||||||||| | |||||| | | |||||||||||||||||||||
Sbjct 1098 TGTTTATCTACTATCGAGTTT-A-TAACTT-T---T---CGTTTGAAATTTTGACTCCAC 1148
Query 1135 T 1135
|
Sbjct 1149 T 1149
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55672404405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5