BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486143 Length=1135 Score E Sequences producing significant alignments: (Bits) Value AT3G57000.1 | Symbols: | nucleolar essential protein-related |... 1672 0.0 > AT3G57000.1 | Symbols: | nucleolar essential protein-related | chr3:21092268-21094297 FORWARD LENGTH=1201 Length=1201 Score = 1672 bits (905), Expect = 0.0 Identities = 1066/1141 (93%), Gaps = 21/1141 (2%) Strand=Plus/Plus Query 1 CTTTAACTTCGAATTAGGGTTTATCAGGATTCAGTCGCCTGCTCACTTGAATTTCTTCAC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 24 CTTTAACTTCGAATTAGGGTTTATCAGGATTCAGTCGCCTGCTCACTTGAATTTCTTCGC 83 Query 61 AAGCTCAAAAAGTTTAGCGAAATTTTTGAAGGAAGATGGTGAGGCCGTATGGGATTAAAG 120 |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 84 AAGCTCAAAAAG-TT-CCGAAATTTTTGAAGGAAGATGGTGAGGCCGTATGGGATTAAAG 141 Query 121 TGAACAAGAGAAAGGAGAGA-ACAGGGAGGTATGATAAGGAAGAAGAAGAAGTAGAGGAA 179 |||||||||||||||||||| | || ||||||||||||||||||||| ||||||||||| Sbjct 142 TGAACAAGAGAAAGGAGAGAGA-AGAGAGGTATGATAAGGAAGAAGATGAAGTAGAGGAG 200 Query 180 CGACcaaagtttgagcaaaaacaaaaggcaagagaaagttcgaagaaagctaaaaaagaa 239 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 201 CAACCAAAGTTTGAGCAAAAACAAAAGGCAAGAGAAAGTTCGAAGAAAGCTAAAAAAGAA 260 Query 240 aTCACTTCAAGAGCAGAGGAAGATAATGAAGAGGAGGAAATAACTGAAGAAGTAACAGCA 299 | ||||||||||||||||||||||||||| ||||||||| |||||| |||| ||| ||| Sbjct 261 AGCACTTCAAGAGCAGAGGAAGATAATGACGAGGAGGAAGTAACTGTGGAAGCAACTGCA 320 Query 300 GCAGCGGCAGAGGATATTGTGGGAGGGATACCTATTGTCCTTAGTGCTCCTAACAGGGAA 359 ||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 321 GCA---GCAGAGGATATTGTGGGAGGGATACCTATTGTCCTTAATGCTCCTAACAAGGAA 377 Query 360 AAGCCCGGTGTTGTTTTCGTGCTTGAGAAGGCCTCTCTTGAAGTTGCCAAAGTTGGAAAG 419 ||| | || |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 378 AAGTCTGGCATTGTATTCGTGCTTGAGAAGGCCTCTCTTGAAGTTGCCAAAGTTGGAAAG 437 Query 420 ACTTACCAGCTACTGAACTCGGATGATCATGCTAATTTCTTGAGAAAGAACAACAGAAAT 479 ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 438 ACTTACCAGCTACTGAACTCGGATGATCATGCTAATTTCTTGAAAAAGAATAACAGAAAT 497 Query 480 CCGGCTGATTACCGACCAGACATCACTCATCAGGCTCTTCTTATGATTTTGGATAGTCCG 539 ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 498 CCGGCTGATTACCGACCAGACATTACTCATCAGGCGCTTCTTATGATTTTGGATAGTCCG 557 Query 540 GTTAATAAGGCTGGGAGGTTGAAAGCGGTATATGTTAGAACAGAAAAAGGTGTCCTTTTT 599 |||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 558 GTTAATAAAGCTGGGAGGTTGAAAGCTGTTTATGTTAGAACAGAAAAAGGTGTCCTTTTT 617 Query 600 GAAGTTAAGCCACATGTTCGTATACCAAGAACTTTCAAACGATTTGCTGGAATCATGTTG 659 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 618 GAAGTTAAGCCACATGTTCGTATACCAAGAACTTTCAAACGATTTGCCGGAATCATGTTG 677 Query 660 CAATTGCTACAAAAGCTGAGCATTTCTGCAGTTGGCAGCGGTGAGAAACTTCTACGGTGT 719 ||| |||||||||||||||||||| |||||||| |||| ||||||| |||||||||||| Sbjct 678 CAACTGCTACAAAAGCTGAGCATTACTGCAGTTAACAGCCGTGAGAAGCTTCTACGGTGT 737 Query 720 GTCAAGAACCCTATCGAAGAATATCATCTACCGGTTAACTCCCACAGAATAGGCTTCTCG 779 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 738 GTCAAGAACCCTATCGAAGAACATCATCTACCGGTTAACTCCCACAGAATAGGCTTCTCG 797 Query 780 CATAGCTCTGAAAAACTCGTCAATATGCAGAAACACCTAGCTACTATATCTGATGAT-AC 838 ||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||| | Sbjct 798 CATAGCTCTGAGAAACTCGTCAATATGCAGAAACACCTAGCTACTGTATGTGATGATGAT 857 Query 839 AGA--CACAGTTTTTGTGGTCGGCGCAATGGCACACGGGAAAATAGAGTGCGACTATATC 896 ||| ||||||||||||||| |||||||||||||||||||||||||| ||| |||||||| Sbjct 858 AGAGACACAGTTTTTGTGGTAGGCGCAATGGCACACGGGAAAATAGACTGCAACTATATC 917 Query 897 GATGAGTTTTTGTCGATTTCAGGGTATCCATTGAGCGCAGCCTACTGTATCTCAAGAATC 956 ||||| ||| ||||| |||||| ||||||||||||||||||||||||||||||||||||| Sbjct 918 GATGAATTTGTGTCGGTTTCAGAGTATCCATTGAGCGCAGCCTACTGTATCTCAAGAATC 977 Query 957 TGCGAGGCATTAGCAACAAATTGGAATATCATATAAA-GAATTATTATAAGGTCCTCTGT 1015 ||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||| ||| Sbjct 978 TGCGAGGCATTAGCAACAAATTGGAATATTATATAAAAGAATGATTATAAGGTCCTTTGT 1037 Query 1016 TTTCCTCTCTACTGCTCTAATGAT-GGAACTACTTTAAGCTACAATGTTGTGATACACAT 1074 |||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||| Sbjct 1038 TTTCCTCTCTACTGCTCTAATGGTAGGAACTACTTTAAGCTATGTTGTTGTGATACACAT 1097 Query 1075 TGTTCATCTACTATCGAGTTTTAATAACTTATAACTTTTCGTTTGAAATTTTGACTCCAC 1134 |||| |||||||||||||||| | |||||| | | ||||||||||||||||||||| Sbjct 1098 TGTTTATCTACTATCGAGTTT-A-TAACTT-T---T---CGTTTGAAATTTTGACTCCAC 1148 Query 1135 T 1135 | Sbjct 1149 T 1149 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55672404405 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5