BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486148
Length=1307
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57040.1 | Symbols: ARR9, ATRR4 | response regulator 9 | chr... 1720 0.0
AT2G41310.1 | Symbols: ATRR3, ARR8, RR3 | response regulator 3 ... 488 5e-137
AT2G07440.1 | Symbols: | two-component responsive regulator-re... 200 3e-50
> AT3G57040.1 | Symbols: ARR9, ATRR4 | response regulator 9 | chr3:21109614-21111432
FORWARD LENGTH=1354
Length=1354
Score = 1720 bits (931), Expect = 0.0
Identities = 1236/1369 (90%), Gaps = 77/1369 (6%)
Strand=Plus/Plus
Query 1 AAAAATCCTCCAAAAGatttgttttgattattttattttatttta-gaaactttgtcttt 59
||||||||| ||||||||||||||| |||||||||||||| |||| ||||||||||| ||
Sbjct 1 AAAAATCCTGCAAAAGATTTGTTTTCATTATTTTATTTTA-TTTAGGAAACTTTGTC-TT 58
Query 60 ttttCCTTCCTCTGCGCTGTCTTCTT-----aa-aaaa-a------------CTCTATTA 100
|||||||||||||||||||||||||| || |||| | |||||||
Sbjct 59 TTTTCCTTCCTCTGCGCTGTCTTCTTCAAAAAACAAAATATTTTGTTTTTTGTTCTATTA 118
Query 101 GTAATTTTGCTTTCTCCACAATTCAAAGCTAAATTAGTTTTATTCATTTTTCCCTCTCTC 160
|||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 119 GTAACTTTGCTTTCTCCACAATTCAAAGCTAATTTAGTTCTATTCATTTTTCCCTCTCTC 178
Query 161 TTTTGCAAAGATTTGGTAG-a-aa-aaaaa-aaaaaGAGTTATAATC-A-GAGATCTTGT 214
||||||||||||||||||| | || ||||| |||||||||||||||| | |||||||||
Sbjct 179 TTTTGCAAAGATTTGGTAGAAGAAGAAAAATAAAAAGAGTTATAATCAATCAGATCTTGT 238
Query 215 TTTAAGTGCAAACTCTTTTATTTCTCTTCCTCACCTAAGCTTCAGCATCGTAAA-TTAAA 273
|||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 239 TTTAAGTGCAGACTC-TTTATTTCTCTTCCTCACCTAAGCTTCAGCATCGTAAATTTAAA 297
Query 274 GATTAAAATCGCATCAAATCCCAGAGa-a--aaa-aaaa-aaTTGATTCTTTTTAGTGAA 328
| ||||||||||||||||||| |||| | ||| |||| |||||||| ||| |||||||
Sbjct 298 -ACTAAAATCGCATCAAATCCCGGAGATAGGAAAGAAAATAATTGATTGTTTCTAGTGAA 356
Query 329 GAAC--aaaaaaaaaaGTCGAAGACTTTACATCTGGGTTCATCGATTTGAGATTTGATCT 386
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 357 GAACAAAAAAAAAAAAGTCGAAGACTTTACATCTGGGTTCATCGATTTGAGATAAGATCT 416
Query 387 TCTTTGAGATTTCTTTTTCTATCTTCAAGTTT-TGCAATGGGTATGGCAGCAGAATCGCA 445
||||| | ||| | ||||||||||||| |||||||||||||||||||||||||||
Sbjct 417 TCTTT---A----TTTGT-TATCTTCAAGTTTCTGCAATGGGTATGGCAGCAGAATCGCA 468
Query 446 GTTTCATGTTTTAGCTGTTGATGATAGTTTATTTGATCGGAAA-TATATAGAGAGATTGC 504
||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||
Sbjct 469 GTTTCATGTTTTAGCTGTTGATGATAGTTTATTTGATCGGAAACT-TATTGAGAGATTGC 527
Query 505 TTCAGAAGTCTTCGTGTCAAGTAACTACTGTTGATTCTGGGTCAAAGGCTTTGGAGTTTC 564
|||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 528 TTCAAAAGTCTTCGTGTCAAGTAACAACTGTTGATTCTGGCTCAAAGGCTTTGGAGTTTC 587
Query 565 TGGGTTTAAGACAAGGTATTGATAGTAACGACCCAAATGCGCTTTCTAAGTCTCCGGTTA 624
|||||||||||||| ||| |||||||||||||||||||||| |||||||| |||| ||||
Sbjct 588 TGGGTTTAAGACAAAGTACTGATAGTAACGACCCAAATGCGTTTTCTAAGGCTCCTGTTA 647
Query 625 CTCAACAGGTAGTTGAAGTGAATCTTATAATTACAGATTATTGTATGCCTGGTATGACTG 684
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 648 ATCACCAGGTAGTTGAAGTGAATCTTATAATTACAGATTATTGTATGCCTGGCATGACTG 707
Query 685 GTTATGATTTGCTCAAGAAAGTCAAGGAATCATCAGCTTTTAGAGACATACCAGTAGTTA 744
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 708 GTTATGATTTGCTCAAGAAAGTCAAGGAATCATCAGCTTTTAGAGATATACCAGTAGTTA 767
Query 745 TCATGTCCTCTGAGAACGTTCCTGCAAGAATCAGCAGATGTTTAGAAGAAGGAGCTGAAG 804
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 TCATGTCCTCAGAGAACGTTCCTGCAAGAATCAGCAGATGTTTAGAAGAAGGAGCTGAAG 827
Query 805 AGTTTTTCTTGAAACCAGTAAGATTGGCTGATCTTAACAAGTTGAAACCTCATATGATGA 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 AGTTTTTCTTGAAACCAGTAAGATTGGCTGATCTTAACAAGTTGAAACCTCATATGATGA 887
Query 865 AAACAAAGTTGAAGAACCAGAAGCTGGAGGAGATTGAGAAAACTTCAAAAGTCGAAAACG 924
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 888 AAACAAAGTTGAAGAACCAGAAGCTGGAGGAGATTGAGACAACTTCAAAAGTCGAAAATG 947
Query 925 GAATTGT-AGCAGCAGTAGTTGAACCAGAGATTAAAGATTCAACACA-AGTTGAAATCGA 982
|| | | | ||||||| ||| ||||||||||||||||||||| | | ||||||| ||
Sbjct 948 GAGTCCCCA-CTGCAGTAGCTGATCCAGAGATTAAAGATTCAACAAACA-TTGAAATTGA 1005
Query 983 AATCTTGCCTCTGCAACAAGATCTGCTATTAGTACAACAAGAGGAGCAAACATTGAGTAC 1042
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1006 AATCTTGCCTCTGCAACAAGATCTGCTATTAGTTCAACAAGAGGAGCAAACATTGAGTAT 1065
Query 1043 CAACAACAAGAGGAAGTCAATGGAAGAAGGGATTTCAACAGATAGAGCACGTCCTAGATT 1102
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1066 CAACAACAAGAGGAAGTCAGTGGAAGAAGGGATTTCAACTGATAGAGCACGTCCTAGATT 1125
Query 1103 TGACGGTATCGCAACCACTGTCTGATCTACC-GCAATGATGCTTCTTTTTCCGGTTTCTG 1161
||||||||||||||| |||||||||||||| || ||||| ||||||||| |||||||||
Sbjct 1126 CGACGGTATCGCAACCGCTGTCTGATCTACCAGCTATGATACTTCTTTTTTCGGTTTCTG 1185
Query 1162 ATTTAGAGTTTTGTAGATTTTCGTAGGAATGCTTCTACTGGTACAATACATGGTTTCAGT 1221
||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 1186 ATTTAGATTTTTGTAGATTTTCTTAGGAATGCTTCTACTGGTACAGTACATGGTTTCAGT 1245
Query 1222 AGAGAATGCAGAGAGGG---T--G--G--G--G----AT------A-A-TGTTTATAAGT 1258
|| |||||||||||||| | | | | | || | | |||||||||||
Sbjct 1246 AGGGAATGCAGAGAGGGGAATATGATGATGATGTTGTATGTGGGGATAATGTTTATAAGT 1305
Query 1259 ACATCAGTAAATCTTACATGGTGAATAATCCAATTCCCAGTTTTGTTTC 1307
|||||||||||||||||||||| ||||| ||| ||||||||||||||||
Sbjct 1306 ACATCAGTAAATCTTACATGGTTAATAACCCAGTTCCCAGTTTTGTTTC 1354
> AT2G41310.1 | Symbols: ATRR3, ARR8, RR3 | response regulator
3 | chr2:17221933-17224427 FORWARD LENGTH=1824
Length=1824
Score = 488 bits (264), Expect = 5e-137
Identities = 467/560 (83%), Gaps = 33/560 (6%)
Strand=Plus/Plus
Query 330 AACaaaaaaaaaaGTCGAAGACTTTACATCTGGGTTCATCGATTTGAGATTTGATCTTCT 389
||||||| | ||||| ||| ||||| |||||||||| || |||| ||| || | ||
Sbjct 264 AACAAAACACAAAGTTGAAAACTTTGCATCTGGGTTTGTCTATTTTAGA-TTCA-GATC- 320
Query 390 TTGAGATTTCTTTTTCTATCTTCAAGT-TTTGCAATGGGT-ATGGCAGCAGAATCGCAGT 447
|| || || |||||| | || || | | | |||| ||| |||| | |||| || |||
Sbjct 321 TT-AG--TT-TTTTTCGA--TTGAA-TATCTACAAT-GGTAATGGAAACAGAGTCAAAGT 372
Query 448 TTCATGTTTTAGCTGTTGATGATAGT-TTATTTGATCGGAAATAT-ATAGAGAGATTGCT 505
| |||||||||||||||||||||||| || |||||||||||| || || |||||||||||
Sbjct 373 TCCATGTTTTAGCTGTTGATGATAGTCTT-TTTGATCGGAAA-ATGATTGAGAGATTGCT 430
Query 506 TCAGAAGTCTTCGTGTCAAGTAACTACTGTTGATTCTGGGTC-AAAGGCTTTGGAGTTTC 564
||| |||||||| |||||||||||||| |||||||| || || ||| ||| |||| ||||
Sbjct 431 TCAAAAGTCTTCATGTCAAGTAACTACAGTTGATTCAGGCTCTAAA-GCTCTGGAATTTC 489
Query 565 TGGGTTTAAGACAAGGTATTGATAG-TAACGACCCAAATGCGCTTTCTA-AGTCTCCGGT 622
|||||||||| | ||| ||| | |||||||||||||| || |||| | || ||
Sbjct 490 TGGGTTTAAG---A-GTA--GAT-GACAACGACCCAAATGCACTCTCTACA-TCGCCACA 541
Query 623 TACTCAACAGGTAGTTGAAGTGAATCTTATAATTACAGATTATTGTATGCCTGGTATGAC 682
| ||| |||| ||||||| | ||||| |||||||||||||| ||||||||||| |||||
Sbjct 542 AATTCATCAGGAAGTTGAAATAAATCTAATAATTACAGATTACTGTATGCCTGGCATGAC 601
Query 683 TGGTTATGATTTGCTCAAGAAAGTCAAGGAATCATCAGCTTTTAG-AGACATACCAGTAG 741
|||||||||||||||||||||||| ||||||||| | || ||||| || ||||| ||||
Sbjct 602 TGGTTATGATTTGCTCAAGAAAGTTAAGGAATCAGCGGCGTTTAGAAG-TATACCTGTAG 660
Query 742 TTATCATGTCCTCTGAGAACGTTCCTGCAAGAATCAGCAGATGTTTAGAAGAAGGAGCTG 801
|||| ||||| |||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 661 TTATAATGTCATCTGAGAACGTTCCTGCAAGAATCTCCAGATGTTTGGAAGAAGGAGCTG 720
Query 802 AAGAGTTTTTCTTGAAACCAGT-AAGATTGGCTGATCTTAACAAGTTGAAACCTCATATG 860
|||||||||||||||||||||| ||| || |||||||||| |||||||||||||||||||
Sbjct 721 AAGAGTTTTTCTTGAAACCAGTGAAG-TTAGCTGATCTTACCAAGTTGAAACCTCATATG 779
Query 861 ATGAAAACAAAGTTGAAGAA 880
|||||||| |||||||||||
Sbjct 780 ATGAAAACGAAGTTGAAGAA 799
> AT2G07440.1 | Symbols: | two-component responsive regulator-related
/ response regulator protein-related | chr2:3093821-3094750
REVERSE LENGTH=411
Length=411
Score = 200 bits (108), Expect = 3e-50
Identities = 153/174 (88%), Gaps = 6/174 (3%)
Strand=Plus/Plus
Query 710 GGAATCATCAGCTTTTAG-AGACATACCA-GTAGTTATCATGTCCTCTGAGAACGTTCCT 767
||||||| |||| ||||| || ||| || |||||||| ||||| |||||||||||||||
Sbjct 24 GGAATCAGCAGCATTTAGAAG-TATA-CATGTAGTTATAATGTCATCTGAGAACGTTCCT 81
Query 768 GCAAGAATCAGCAGATGTTTAGAAGAAGGAGCTGAAGAGTTTTTCTTGAAACCAGT-AAG 826
|||||||| ||||||||| ||| ||||||||||||||||||||||||||||||| |||
Sbjct 82 ACAAGAATCTCCAGATGTTTGGAAAAAGGAGCTGAAGAGTTTTTCTTGAAACCAGTAAAG 141
Query 827 ATTGGCTGATCTTAACAAGTTGAAACCTCATATGATGAAAACAAAGTTGAAGAA 880
|| | ||||| || ||||||||||||||||||||||||||||||||| |||||
Sbjct 142 -TTAGTTGATCATACCAAGTTGAAACCTCATATGATGAAAACAAAGTTAAAGAA 194
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64306898145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5