BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486150
Length=1627
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57050.1 | Symbols: CBL | cystathionine beta-lyase | chr3:21... 2039 0.0
> AT3G57050.1 | Symbols: CBL | cystathionine beta-lyase | chr3:21111700-21114662
REVERSE LENGTH=1775
Length=1775
Score = 2039 bits (1104), Expect = 0.0
Identities = 1232/1295 (95%), Gaps = 4/1295 (0%)
Strand=Plus/Plus
Query 311 CTATGAATATCAAAGAAGAAGCTAGTGTCTCTACATTATTGGTTAACGTGGATAATAAAT 370
||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||
Sbjct 374 CTATGAATATCAAAGAAGAAGCTAGCGTCTCTACATTATTGGTGAACTTGGATAATAAAT 433
Query 371 TTGATCCCTTTGAAGCAATGAGCACTCCACTTTACCAAACAGCTACATTTAAGCAGCCTT 430
||||||||||||| |||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct 434 TTGATCCCTTTGATGCAATGAGCACTCCGCTTTACCAAACTGCTACTTTTAAGCAGCCTT 493
Query 431 CTGCTATTGAAAATGGACCTTATGATTATACAAGAAGTGGAAATCCTACACGGGATGCAT 490
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 494 CTGCTATTGAAAATGGACCTTATGATTATACAAGAAGTGGCAATCCTACACGGGATGCAT 553
Query 491 TGGAAAGCCTCCTTGCAAAGCTTGACAAGGCAGATAGAGCATTTTGCTTTACTAGTGGAA 550
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 554 TGGAAAGCCTCCTTGCGAAGCTTGACAAGGCAGATAGAGCATTTTGCTTTACTAGCGGAA 613
Query 551 TGGCTGCTCTTAGTGCTGTTACACACCTTATCAAAAATGGCGAAGAAATTGTTGCTGGAG 610
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 614 TGGCTGCTCTTAGTGCTGTTACACATCTTATCAAAAATGGCGAAGAAATTGTTGCTGGAG 673
Query 611 ATGATGTATATGGTGGCTCAGACAGATTACTATCCCAAGTTGTTCCAAGATCCGGCGTTG 670
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 674 ATGATGTATATGGTGGCTCTGACAGATTACTATCCCAAGTTGTTCCAAGATCTGGCGTTG 733
Query 671 TGGTAAAACGAGTAAACACAACTAATTTAAACGAGGTTGCTGCTGCGATTGGTCCCCGGA 730
||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||| |
Sbjct 734 TGGTAAAACGAGTAAACACAACTAAGTTAGACGAGGTTGCTGCTGCAATTGGTCCCCAAA 793
Query 731 CAAAGCTTGTGTGGCTTGAGTCTCCAACAAACCCCAGACAACAAATTTCTGATATACGAA 790
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 794 CAAAGCTTGTGTGGCTTGAGTCTCCAACAAACCCAAGACAACAAATTTCTGATATACGAA 853
Query 791 AAATAGCTGAGATGGCTCATACTCAAGGTGCGCTTGTGTTGGTGGACAACAGTATTATGT 850
||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 854 AAATATCTGAGATGGCTCATGCTCAAGGTGCTCTTGTGTTGGTGGACAACAGTATTATGT 913
Query 851 CACCAGTGCTCTCTCGGCCATTAGAACTTGGAGCTGACATCGTGATGCACTCAGCTACTA 910
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 914 CACCAGTGCTCTCTCGGCCATTAGAACTTGGAGCTGACATCGTGATGCACTCGGCTACTA 973
Query 911 AGTTTATAGCTGGGCACAGTGATGTGATGGCGGGTGTGCTTGCTGTCAAAGGCGAAAAAT 970
|||||||||| || |||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 974 AGTTTATAGCCGGACACAGTGACGTGATGGCAGGTGTGCTTGCTGTAAAAGGCGAAAAAT 1033
Query 971 TGGCAAAGGAGGTGTATTTCCTCCAAAACTCAGAAGGTTCTGGATTAGCTCCTTTCGACT 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1034 TGGCAAAGGAGGTGTATTTCCTCCAAAACTCAGAAGGTTCTGGATTAGCTCCTTTCGACT 1093
Query 1031 GTTGGCTTTGCCTACGAGGAATCAAGACAATGGCTTTACGGATAGAAAAGCAACAGGAAA 1090
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1094 GTTGGCTTTGCCTTCGAGGAATCAAGACAATGGCTTTACGGATAGAAAAGCAACAGGAAA 1153
Query 1091 ACGCACGGAAGATTGCAATGTACTTGTCTTCTCATCCAAGAGTGAAGAAAGTGTACTATG 1150
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1154 ACGCACGGAAAATTGCAATGTACTTGTCTTCTCATCCAAGAGTAAAGAAAGTGTACTATG 1213
Query 1151 CTGGTCTACCAGATCATCCTGGTCACCATCTCCACTTCTCTCAGGCTAAGGGTGCAGGAT 1210
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1214 CTGGTCTACCAGATCATCCTGGTCACCATCTCCACTTCTCTCAGGCGAAGGGTGCAGGAT 1273
Query 1211 CAGTTTTTAGCTTTATAACTGGATCGGTTGCGCTATCAAAGCATCTTGTAGAAACCACCA 1270
||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct 1274 CAGTTTTTAGCTTTATAACTGGATCAGTTGCGCTTTCAAAGCATCTCGTAGAAACCACCA 1333
Query 1271 AATACTTCAGCATTGCAGTCAGTTTTGGGAGTGTTAAGTCACTTATAAGCATGCCATGCT 1330
||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1334 AATACTTCAGCATAGCTGTCAGTTTTGGGAGTGTTAAGTCACTGATAAGCATGCCATGCT 1393
Query 1331 TCATGTCACATGCAAGCATACCTGCAGAAGTTCGTGAGGCCAGAGGCTTGACGGAAGATC 1390
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1394 TCATGTCACATGCAAGCATACCTGCAGAAGTTCGTGAGGCCAGAGGTTTGACGGAAGATC 1453
Query 1391 TTGTCCGTATATCTGCTGGCATCGAAGATGCGGATGATTTGATCTCGGATCTTGACATTG 1450
|||||||||||||||| || || ||||||| ||||||||||| || |||||||||||||
Sbjct 1454 TTGTCCGTATATCTGCAGGAATTGAAGATGTTGATGATTTGATATCTGATCTTGACATTG 1513
Query 1451 CCTTTAATACCTGTCC-TCTCTAGCTTCCATTTGTTCTTGTCTCAACTTTTGTAGTTTCA 1509
|||| || |||| ||| ||||||| || ||||||||||||||| ||||||||||||||
Sbjct 1514 CCTTCAAAACCT-TCCCTCTCTAGTTTTGGTTTGTTCTTGTCTCAGCTTTTGTAGTTTCA 1572
Query 1510 TAGGTTCTTGAAGTAAGAATCTAAT-TAACAAACCATAATACATAATTTGGTGTTTGAAA 1568
|||||||||||| |||| ||||| | ||||||||||||| ||||||||||||||||||||
Sbjct 1573 TAGGTTCTTGAAATAAGGATCTA-TGTAACAAACCATAAAACATAATTTGGTGTTTGAAA 1631
Query 1569 AGAGATCAAGCAATAAATTCATCATTGTTAGATTT 1603
| | |||||||||||||||||| ||||||||||||
Sbjct 1632 ACACATCAAGCAATAAATTCATTATTGTTAGATTT 1666
Score = 444 bits (240), Expect = 1e-123
Identities = 282/302 (93%), Gaps = 3/302 (1%)
Strand=Plus/Plus
Query 10 CTCACTTGAGCACGAGAACTGCCTCCGTCGCCGACT-TTATCTCGTCGGCTAATATCTCA 68
||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||
Sbjct 29 CTCACTTGAGCACGAGAACTGTCTCCGTCGCCG-TTATTATCTCGTCGGCTAATATCTCA 87
Query 69 GACGAGAAATCGACGCCGGAGAAGAAGCTTTTTTAATTCTCTTTCATCAACCAGAATGGC 128
||||||||||||||||||||||| |||| ||| | |||||||||||| |||| |||| |
Sbjct 88 GACGAGAAATCGACGCCGGAGAAAAAGCAATTT-AGTTCTCTTTCATCTACCAAAATGAC 146
Query 129 ATCTTCTCTGTCACTTCATTCCTCCTTCGTACCTTCCTTCGCTGATCTCCCCGACCGAGG 188
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 147 ATCTTCTCTGTCACTTCACTCCTCCTTCGTACCTTCCTTCGCTGATCTCTCCGACCGAGG 206
Query 189 TTTGGTCAATAAGAACTCTCCGACCAGTGTTTCCATTTCCAAGGTTCCAACCTGGGAGAA 248
|||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 207 TTTGATCAGTAAGAACTCTCCGACCAGTGTTTCCATTTCCAAGGTTCCAACTTGGGAGAA 266
Query 249 GAAGCAGATCTCGAATCGCAACTTTTTCAAGCTGAATTGCGTGATGGAGAAAAGTGTCGA 308
|||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 267 GAAGCAGATCTCAAATCGGAACTCTTTCAAGCTGAATTGCGTGATGGAGAAAAGTGTCGA 326
Query 309 TG 310
||
Sbjct 327 TG 328
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80371072545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5