BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486155
Length=1496
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57120.1 | Symbols: | Protein kinase superfamily protein | ... 2204 0.0
> AT3G57120.1 | Symbols: | Protein kinase superfamily protein
| chr3:21138905-21140610 FORWARD LENGTH=1706
Length=1706
Score = 2204 bits (1193), Expect = 0.0
Identities = 1416/1520 (93%), Gaps = 30/1520 (2%)
Strand=Plus/Plus
Query 1 ACAAAAGAAGAGTAGACTTTCCATCA----CCGCTATAATGCGCCGA-TCTCCGCGTTCT 55
||||||||||||||||||| |||||| ||||||||||||||| | |||||||||| |
Sbjct 66 ACAAAAGAAGAGTAGACTTCCCATCATCCTCCGCTATAATGCGCC-ACTCTCCGCGTTAT 124
Query 56 CTATAAGACGCCAGTA-TCCGTGCCCGCTATAATGCGCTGGTCTCCGTGTCCGCCTCTCT 114
|||||| |||| |||| ||||||||||||||||||||| |||||||| || ||||||||
Sbjct 125 CTATAATACGCTAGTATTCCGTGCCCGCTATAATGCGCAAGTCTCCGTCTCAGCCTCTCT 184
Query 115 CCGCCGTCTAATGTCTGATCTTCTAGGTCTCCTCCACAGATTCGAACAAGAATTTGTCTT 174
|||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 185 TCGCCGTCTGATGTCTGATCTTCTAGGTCACCTCCACAAATTCGAACAAGAATTTGTCTT 244
Query 175 AATGTGCAAAACCAAAATGGGAGTCAATGCTTCAGAGCCAAAACGAACACGATCGCGACC 234
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 TATGTGCAAAACCAAAATGGGAGTCAATGCTTCAGAGCCAAAACGAACACGATCGCGACC 304
Query 235 GAGTCAATCGCAAGAGAGGCATCCGTCGACGAGACGATCTCCGTCAACGAGCACCACCGG 294
||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 305 AAGTCAATCGCAGGGGAGGCATCCGTCGACGAGACGATCTCCGTCAACGAGCAACACCGG 364
Query 295 --C-ACAACAACCACGACGACATCGAATTCTAACAAAACTGGTGCCTCCTCCTCCTCCTC 351
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 365 CACAACAACAACCACGACGACATCGAATTCTAACAAAACTGGTGCCTCCTCTTCCTCCTC 424
Query 352 AGGT---GCTTCTTCTTCAGTCGCTAGTCGAACATCTCTCGCTAGTCTCCGAGAATCCTT 408
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 CGGTGCGGCTTCTTCCTCAGTCGCTAGTCGAACATCTCTCGCTAGTCTCCGAGAATCCTT 484
Query 409 ACCGGAGAACCCTCACATATACAACGTCTCCGAGATTCGTGCCGCCACCAACAATTTCCT 468
|||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 485 ACCGGAAAATCCTCACATATACAACGTCTCCGAGATTCGTGCCGCTACCAACAATTTCCT 544
Query 469 CGCTAATCGCTTATCTTCCTCTTCCTCTAAAGCCTCGTGGCGTTGCAATTTGAGAGGGAA 528
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 545 CGCTAATCGCTTATCTTCCTCTTCCTCTAAAGCCTCCTGGCGTTGCAATTTAAGAGGGAA 604
Query 529 AGAAGTCGTTGTCTTTCAGAGAAAGTTTAGACGAAGAATCGCCATGGATGAGCTTAGAGA 588
|||||||||||| ||||||||||||||||| ||||| |||| || |||||||||||||||
Sbjct 605 AGAAGTCGTTGTGTTTCAGAGAAAGTTTAGGCGAAGGATCGACACGGATGAGCTTAGAGA 664
Query 589 TCGTCTTTCAGATATTTGCCGGAGCCACCACGGAAGCATCACAAATCTACTCGGCGCTTC 648
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 665 TCGTCTTTCAGATATTTGCCGGAGCCACCACGGAAGCATCATTAATCTACTCGGCGCTTC 724
Query 649 TGTTTCCGGCGGT----G-G-A--A-gaggaggaggaggaggaggCGATCACATCTACCT 699
||||||||||||| | | | | ||||||||||||||||||| |||||||||||| |
Sbjct 725 TGTTTCCGGCGGTGGAAGAGTAGGAGGAGGAGGAGGAGGAGGAGGTGATCACATCTACTT 784
Query 700 AGTCTACGCATACGTCAACGGAGCATCTCTCGCTGAGTGCTTGAGAAACCCTAAGAACCC 759
||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 785 GGTCTACGAATACGTCAACGGAGCATCTCTAGCTGATTGCTTGAGAAACCCTAAGAACCC 844
Query 760 T-AATTTCACAGTTTTATCGAATTGGACATCACGGATTCAAATTGCAACAGATCTAGCTC 818
| ||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 845 TAAATTT-ACAGTTCTATCGAATTGGACTTCACGGATTCAAATTGCAACAGATCTAGCTC 903
Query 819 ATGGACTCGATTACATCCACAACAAGACTGGATTAAAGATCGAAAATCTCGTTCACAATC 878
||||||||||||||||||||||||| || ||||||||||||||||| || ||||||||||
Sbjct 904 ATGGACTCGATTACATCCACAACAAAACCGGATTAAAGATCGAAAACCTAGTTCACAATC 963
Query 879 ACATCAAGAGCTCGGCGGTGATCGTGACGGAGCCTGATTTCAACGCTAAGATCTGTCACT 938
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 964 ACATCAAGAGCTCGGCGGTGATCGTGACGGAGCCAGATTTCAACGCTAAGATCTGTCACT 1023
Query 939 TCGGAACTGCGCAGCTTTGCGGTGAAACAGATGAAATGTCACCGGAGATAGACGAATCGA 998
|||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||
Sbjct 1024 TCGGAACTGCGCAGCTTTGCGGCGAAACAGATGAAATGTCACTGGAGAGAGACGAATCGA 1083
Query 999 GAAATTCCCGGCGATCTGATAGCAGAGCGATCAGATTCGAAGGAGTTAGAGGTTACATGT 1058
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 GAAATTCAAGGCGATCTGATAGCAGAGCGATCAGATTCGAAGGAGTTAGAGGTTACATGT 1143
Query 1059 CGCCGGAATTTCAATCATC-GGGAATCGCGACTCAGAAATCAGACGTTTACGCTTTCGGA 1117
|||||||||||||| || ||||||||| ||||||||||| || |||||||||||||||
Sbjct 1144 CGCCGGAATTTCAAA-ATTTGGGAATCGCTACTCAGAAATCGGATGTTTACGCTTTCGGA 1202
Query 1118 GTTATGATGTTGGAGCTTCTCTCAGGCGAGGAGCCGTTGAAGTACAGATATGATAAATCC 1177
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1203 GTTATGATGTTGGAGCTTCTCTCAGGCGAGGAGCCGTTGAAGTACAGGTATGATAAAGCC 1262
Query 1178 ACCGGAGATTTCGAGCGGACGTCGGTGATTGAAACGGCGGGAGCGGCGATCGA-GTACGG 1236
|| |||||||||||||||||||||||||||||||||||| ||||||||||||| | | ||
Sbjct 1263 ACAGGAGATTTCGAGCGGACGTCGGTGATTGAAACGGCGAGAGCGGCGATCGAAG-ATGG 1321
Query 1237 AGATGGTGATAAAGAGGGAAGATTGAGGAGGTGGATGGATCGGAGATTAGG-GGATTCGT 1295
||||||||||| ||| |||||| ||||||||||||||||||||||||| || ||||||||
Sbjct 1322 AGATGGTGATAGAGATGGAAGACTGAGGAGGTGGATGGATCGGAGATT-GGAGGATTCGT 1380
Query 1296 TTCCTGTGACGGTGGTGGAGAAATTAACGAGGCTGGCGTTGGATTGCGTTCAGGATGATC 1355
|||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct 1381 TTCCTGTGACGGTGGTGGAGAAGTTAACGAGGCTAGCGTTGGATTGTGTTCAGGATGATC 1440
Query 1356 CGGTGAATAGGCCGGAGATGGGAAGAGTCGCCGGGAAAATATCTCAATTGTATTTGGAAT 1415
| |||||||||||||||||||||||||||||||| |||||||| ||| ||||||| ||||
Sbjct 1441 CAGTGAATAGGCCGGAGATGGGAAGAGTCGCCGGAAAAATATCACAACTGTATTTAGAAT 1500
Query 1416 CGGAAAAATGGTCGGCGAATATGAAACGGCCAACGGATATCACCGTCTCCTTCGCTCCCA 1475
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1501 CGGAAAAATGGTCGGCGAATATGAAACGGCCAACGGATATCACCGTCTCTTTCGCTCCCA 1560
Query 1476 GATGAGGGAATATTCCTATT 1495
||||||||||| ||| ||||
Sbjct 1561 GATGAGGGAATCTTCTTATT 1580
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73794801150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5