BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486162
Length=2051
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57180.1 | Symbols: BPG2 | P-loop containing nucleoside trip... 2344 0.0
> AT3G57180.1 | Symbols: BPG2 | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:21163545-21166138
REVERSE LENGTH=2233
Length=2233
Score = 2344 bits (1269), Expect = 0.0
Identities = 1389/1446 (96%), Gaps = 12/1446 (1%)
Strand=Plus/Plus
Query 616 AAGAAGAAACGGGTTTCGAAAACAGAGAGGAAGAAGATAGCTAGGGAAGAGGCAAAGAAA 675
||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct 772 AAGAAGAAACGGGTTTCCAAAACAGAGAGGAAGAAGATAGCTAGAGAGGAGGCAAAGAAA 831
Query 676 GACAATTATGATGATGTGACGGTGTGTGCTCGTTGCCATTCTCTGAGGAATTATGGCCAG 735
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 832 GACAATTATGATGATGTGACTGTGTGTGCTCGTTGCCATTCTCTGAGGAATTATGGCCAG 891
Query 736 GTGAAGAATCAGGCTGCAGAGAACCTCTTACCAGATTTTGATTTTGATAGGTTGATATCA 795
||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||
Sbjct 892 GTGAAGAATCAGGCTGCAGAGAATCTCTTACCCGATTTTGATTTCGATAGGTTGATCTCA 951
Query 796 ACTAGACTGATCAAACCAATGAGTAATTCCAGCACTACAGTTGTAGTCATGGTTGTTGAT 855
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 952 ACTAGACTGATCAAACCGATGAGTAACTCCAGCACTACAGTTGTAGTCATGGTTGTTGAT 1011
Query 856 TGTGTCGACTTTGATGGTTCGTTTCCCAAACGAGCAGCCAAGTCTCTGTTTCAAGTGCTT 915
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1012 TGTGTAGACTTTGATGGTTCGTTTCCCAAACGAGCTGCCAAGTCTCTGTTTCAAGTGCTT 1071
Query 916 CAAAAAGCTGAAAATGATCCTAAGGGTAGCAAAAACCTCCCAAAACTTGTGCTTGTTGCA 975
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1072 CAAAAAGCTGAAAATGATCCTAAGGGTAGCAAAAACCTCCCAAAACTTGTACTTGTTGCA 1131
Query 976 ACAAAAGTAGACTTACTTCCTACACAGATTTCACCAGCTCGGTTAGACCGATGGGTGCGC 1035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 ACAAAAGTAGACTTACTTCCTACACAGATTTCACCAGCTCGGTTAGACCGATGGGTGCGC 1191
Query 1036 CACCGTGCCAAGGCTGGAGGAGCTCCTAAGCTAAGTGGGGTTTATATGGTTAGTGCTCGC 1095
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1192 CACCGTGCCAAGGCTGGAGGAGCACCTAAGCTAAGTGGGGTTTATATGGTTAGTGCTCGC 1251
Query 1096 AAAGATCTTGGTGTTAAGAATCTGTTAGCGTACATTAAAGAGTTGGCTGGTCCAAGAGGA 1155
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1252 AAAGATATTGGTGTTAAGAATCTGTTAGCTTACATTAAAGAGTTGGCTGGTCCAAGAGGA 1311
Query 1156 AACGTGTGGGTTATTGGATCTCAGAACGCCGGGAAATCTACTTTGATTAATGCCTTATCC 1215
|| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1312 AATGTGTGGGTTATTGGAGCTCAGAACGCGGGGAAATCTACTTTGATTAATGCCTTATCC 1371
Query 1216 AAGAAAGATGGTGCAAAGGTCACGAGGCTCACGGAAGCTCCGGTTCCTGGAACAACTCTT 1275
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1372 AAGAAAGATGGTGCAAAGGTCACGAGGCTCACGGAAGCTCCAGTTCCTGGAACAACTCTT 1431
Query 1276 GGAATATTGAGAATTGGAGGAATATTGTCTGCAAAGGCGAAGATGTATGACACTCCAGGC 1335
|||||||||| |||||| |||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1432 GGAATATTGAAAATTGGCGGAATATTGTCTGCAAAGGCTAAGATGTATGACACTCCCGGC 1491
Query 1336 CTTTTGCATCCCTACCTTATGTCCCTGAGATTGAATCCAGAGGAGCGGAAAATGGTAGAA 1395
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1492 CTTTTGCATCCCTACCTTATGTCCCTGAGATTGAATTCAGAGGAGCGGAAAATGGTAGAG 1551
Query 1396 ATAAGGAAGG-AGCTTCAACCTCGGAGTTAC--AG---A-GCAGGACAGTCTGTTCACAT 1448
|||||||||| || ||||||||||||||||| || | ||||||||||||||||||||
Sbjct 1552 ATAAGGAAGGAAG-TTCAACCTCGGAGTTACAGAGTCAAGGCAGGACAGTCTGTTCACAT 1610
Query 1449 TGGTGGCCTGGTCAGGCTAGACCTCGTTTCTGCTTCAGTTGAAACAATATACATTACAAT 1508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1611 TGGTGGCCTGGTCAGGCTAGACCTCGTTTCTGCTTCAGTTGAAACAATATACATTACAAT 1670
Query 1509 ATGGGCATCACATAGTGTTTCATTGCATCTAGGAAAAACAGAGAATGCCGAAGAAATATT 1568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1671 ATGGGCATCACATAGTGTTTCATTGCATCTAGGAAAAACAGAGAATGCCGAAGAAATATT 1730
Query 1569 CAAGGGCCATTCAGGTTTACGCCTTCAGCCACCGATTGGAGAGAACAGAGCGTCTGAATT 1628
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1731 CAAGGGCCATTCCGGTTTACGCCTTCAGCCACCAATTGGAGAGAACAGAGCGTCTGAATT 1790
Query 1629 GGGAACATGGGAAGAGAAGGAGATTCAGGTGTCGGGAAATAGCTGGGACGTGAAAAGCAT 1688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1791 GGGAACATGGGAAGAGAAGGAGATTCAGGTGTCGGGAAATAGCTGGGACGTGAAAAGCAT 1850
Query 1689 AGACATTTCAGTGGCTGGTCTTGGCTGGTTATCCCTTGGTCTCAAAGGTGCAGCAACACT 1748
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1851 AGACATTTCAGTGGCTGGTCTTGGCTGGTTATCCCTGGGCCTCAAAGGTGCAGCAACACT 1910
Query 1749 AGCATTATGGACTTATCAGGGGATTGATGTAACCTTGAGAGAACCGTTGGTTATTGACCG 1808
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1911 AGCATTGTGGACTTATCAGGGGATTGATGTAACCTTGAGAGAACCATTGGTTATTGACCG 1970
Query 1809 CGCACCATTTCTTGAGCGGCCTGGCTTCTGGTTGCCAAAAGCCATCACCGAAGTGCTTGG 1868
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1971 CGCACCATATCTTGAGCGGCCTGGCTTCTGGTTGCCAAAAGCCATCACCGAAGTGCTTGG 2030
Query 1869 AACGCATTCTAGTAAGCTTGATGATGCTCGTAGGAGGAAGAAGCAACAAGACAGCACAGA 1928
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2031 AACACATTCTAGTAAGCTTGTTGATGCTCGTAGGAGGAAGAAGCAACAAGACAGCACAGA 2090
Query 1929 TTTTCTCTCTGATATTGTTTCATAGTA-A-CCTGTATGGACTTATAATTAGCTTTCATCA 1986
|||||||||||||| |||| | ||||| | ||||||| ||||||| ||||||||||||||
Sbjct 2091 TTTTCTCTCTGATAGTGTTGCTTAGTATAACCTGTATCGACTTATTATTAGCTTTCATCA 2150
Query 1987 TTGTAGTCATTTTGGAAAGTTTATATTGGCTTGA-GTATTTTAAACCATTTTTAAAGCCA 2045
|||||||||||||||||||||||||||| || | |||||||||| || ||||||| |||
Sbjct 2151 GTGTAGTCATTTTGGAAAGTTTATATTGGTTT-ATGTATTTTAAAACAATTTTAAATCCA 2209
Query 2046 CATCGA 2051
||||||
Sbjct 2210 CATCGA 2215
Score = 900 bits (487), Expect = 0.0
Identities = 576/618 (93%), Gaps = 10/618 (2%)
Strand=Plus/Plus
Query 1 AGAAGTGACACACTCTCAAACGAAATGGTGGTTTTGATTTCAAGTACAGTGACGATTTGC 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 109 AGAAGTGACACGCTCTCAAACGAAATGGTGGTTTTGATTTCAAGTACAGTGACGATTTGC 168
Query 61 AGA-GTAAAACCAAAGCTTGAAGACGGAAGCTTTCGCGTTAGCCGTTTGATACCCAGACC 119
| | || |||||||||||||||||||||| ||||||||||||||| ||||||| ||||||
Sbjct 169 A-ATGTTAAACCAAAGCTTGAAGACGGAAACTTTCGCGTTAGCCGGTTGATACACAGACC 227
Query 120 CGAAGTTCCATTTTTCTCTGGATTGAGTGATGAGAAGAAGAAGAAGAAATGTGCAGTTTT 179
||| |||||||||||||| ||||||||| || | ||||||||||||||||||||||||
Sbjct 228 CGAGGTTCCATTTTTCTCAGGATTGAGTAAT--G-AGAAGAAGAAGAAATGTGCAGTTTC 284
Query 180 GGTTACGTATTTAGCTGTGAAGAAAGAACAAGTTGTTCAAAGCGTGGAGAGTGTTAAAGG 239
||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 285 GGTTATGTGTTTAGCTGTGAAGAAAGAACAAGTTGTTCAAAGCGTGGAGAGTGTTAACGG 344
Query 240 GACGATTTTTCCGAAGAAATCAAAAAATCTTATCATGAGCGAAGGAAGAGATGAAGATGA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 GACGATTTTTCCGAAGAAATCAAAAAATCTTATCATGAGCGAAGGAAGAGATGAAGATGA 404
Query 300 GGAGTATGGGAAGATTATTTGTCCAGGCTGTGGGATTTTTATGCAGGACAATGATCCAGA 359
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 405 GGACTATGGGAAGATTATTTGTCCAGGTTGTGGGATTTTTATGCAGGACAATGATCCAGA 464
Query 360 TTTGCCTGGATTTTATCAGAAGAGAAAGGTCATTGCAAAGAACTTGGAAGTTGATGAAGA 419
||| || |||| |||||||||||||||||||||||| || |||||||||| ||||||| |
Sbjct 465 TTTACCCGGATATTATCAGAAGAGAAAGGTCATTGCGAATAACTTGGAAGGTGATGAACA 524
Query 420 GGAGGAAGATGATGAGCTTGATGGGTttgaaatggttgttgatgatg-ag-t-tggagga 476
| |||| |||||||||||| ||||||||||||||||| |||||||| | | ||||||
Sbjct 525 TGTGGAAAATGATGAGCTTGCTGGGTTTGAAATGGTTGATGATGATGCTGATGAGGAGGA 584
Query 477 gg-aggaggaagatgatgaaatggatgatgagatCAAGAATGCAATAGAAGGTAGCAACT 535
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 GGAAGG-GGAAGATGATGAAATGGATGATGAGATCAAGAATGCAATAGAAGGTAGCAACT 643
Query 536 CTGAAAGTGAGAGTGAGTTTGACTGGGAATCAGATGAGTGGGAAGACAAGGAGGAAGTGA 595
||||||||||||||| |||||| ||||||||||||||||||||||| ||| |||||||||
Sbjct 644 CTGAAAGTGAGAGTGGGTTTGAATGGGAATCAGATGAGTGGGAAGAAAAGAAGGAAGTGA 703
Query 596 ATGATGTTGAATTGGATG 613
||||||||||||||||||
Sbjct 704 ATGATGTTGAATTGGATG 721
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101656103625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5