BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg486166

Length=822
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G57230.1 | Symbols: AGL16 | AGAMOUS-like 16 | chr3:21177423-...  1312    0.0  
  AT4G24415.1 | Symbols: MIR824A | MIR824a; miRNA | chr4:12623536...  67.6    2e-10


> AT3G57230.1 | Symbols: AGL16 | AGAMOUS-like 16 | chr3:21177423-21180932 
FORWARD LENGTH=1180
Length=1180

 Score = 1312 bits (710),  Expect = 0.0
 Identities = 769/797 (96%), Gaps = 5/797 (1%)
 Strand=Plus/Plus

Query  1    ATGGGAAGGGGAAAGATCGCGATTAAGAGGATCAATAACTCTACGAGCCGTCAGGTTACG  60
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  197  ATGGGAAGGGGCAAGATCGCGATTAAGAGGATCAATAACTCTACGAGCCGTCAGGTTACG  256

Query  61   TTCTCTAAGCGAAGGAATGGACTGTTGAAGAAAGCTAAGGAGCTTGCGATTCTCTGCGAT  120
            ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  257  TTCTCGAAGCGAAGGAATGGATTGTTGAAGAAAGCTAAGGAGCTTGCGATTCTCTGCGAT  316

Query  121  GCTGAGGTTGGTGTTATCATCTTCTCCAGCACCGGTAGGCTCTACGATTTCTCCAGCTCC  180
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  317  GCTGAGGTTGGTGTCATCATCTTCTCCAGCACCGGTAGGCTCTACGATTTCTCCAGCTCC  376

Query  181  AGCATGAAATCGGTCATAGAGAGATACAGCGATGCCAAAGGGGAAACCAGTTCAGAAAAT  240
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  377  AGCATGAAATCGGTCATAGAGAGATACAGCGATGCCAAAGGAGAAACCAGTTCAGAAAAT  436

Query  241  GATCCCGCTTCAGAAATTCAGTTCTGGCAAAAGGAGGCTGCGATTCTAAAGCGACAGCTA  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  437  GATCCCGCTTCAGAAATTCAGTTCTGGCAAAAGGAGGCTGCGATTCTAAAGCGTCAGCTA  496

Query  301  CATAACTTGCAAGAAAACCACCGGCAAATGATGGGGGAGGAGCTCTCTGGACTAAGTGTA  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  497  CATAACTTGCAAGAAAACCACCGGCAAATGATGGGGGAGGAGCTCTCTGGACTAAGTGTA  556

Query  361  GGAGCTTTACAGAATTTGGAAAATCAGCTTGAATTGAGCCTTCGTGGCGTTCGAATGAAA  420
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  557  GAAGCTTTACAGAATTTGGAAAATCAGCTTGAATTGAGCCTTCGTGGCGTTCGAATGAAA  616

Query  421  AAGGATCAAATGTTAATCGAAGAAATACAAGTACTCAACCGAGAGGGGAATCTCGTGCAC  480
            ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct  617  AAGGATCAAATGTTAATCGAAGAAATACAAGTACTTAACCGAGAGGGGAATCTCGTTCAC  676

Query  481  CAAGAGAATTTAGACCTCCACAAGAAAGTAAACCTAATGCACCAACAGAACAAGGAACTA  540
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  677  CAAGAGAATTTAGACCTCCACAAGAAAGTAAACCTAATGCACCAACAGAACATGGAACTA  736

Query  541  CATGAAAAGGTTTCAGAGGTTGAGGGTGTGAAAATCACAAACAAGAATTCTCTTCTCACA  600
            |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct  737  CATGAAAAGGTTTCAGAGGTCGAGGGTGTGAAAATCGCAAACAAGAATTCTCTTCTCACA  796

Query  601  AATGGTCTAGACATGAGAGATAACTCGAGCGAACATGTCCATCTTCAGCTCAGCCAACCG  660
            |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct  797  AATGGTCTAGACATGAGAGATACCTCGAACGAACATGTCCATCTTCAGCTCAGCCAACCG  856

Query  661  CAGCATGAT---GAGACGCATGCAAAAGCTATCCAACTCAACTATTTTTCTTTCATTGCA  717
            |||||||||   ||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct  857  CAGCATGATCATGAGACGCATTCAAAAGCTATCCAACTCAACTATTTTTCCTTCATTGCA  916

Query  718  TGATGATATATTCGGTGTGCCGACACACTTATGTTGACCTCATCGGAATCATATCTCAAT  777
            | || ||| |||||||||||| ||||||||||||||||||| ||||||||||||| ||||
Sbjct  917  TAAT-ATA-ATTCGGTGTGCCAACACACTTATGTTGACCTCGTCGGAATCATATCACAAT  974

Query  778  TAACTGTATCAGTTTGC  794
            | ||||| |||| ||||
Sbjct  975  TCACTGTGTCAGCTTGC  991


> AT4G24415.1 | Symbols: MIR824A | MIR824a; miRNA | chr4:12623536-12626432 
FORWARD LENGTH=1485
Length=1485

 Score = 67.6 bits (36),  Expect = 2e-10
 Identities = 44/48 (92%), Gaps = 0/48 (0%)
 Strand=Plus/Minus

Query  579  AAACAAGAATTCTCTTCTCACAAATGGTCTAGACATGAGAGATAACTC  626
            |||||| || || ||||||||||||||||||||||||||||| |||||
Sbjct  363  AAACAAAAACTCCCTTCTCACAAATGGTCTAGACATGAGAGACAACTC  316



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 40036615159


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5