BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486168
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57260.1 | Symbols: BGL2, PR2, BG2, PR-2 | beta-1,3-glucanas... 1543 0.0
> AT3G57260.1 | Symbols: BGL2, PR2, BG2, PR-2 | beta-1,3-glucanase
2 | chr3:21188517-21189859 REVERSE LENGTH=1249
Length=1249
Score = 1543 bits (835), Expect = 0.0
Identities = 991/1065 (93%), Gaps = 15/1065 (1%)
Strand=Plus/Plus
Query 1 TTTCAGAGTATCATAGAAAAATCAAGAAAATGTCTGAATCAAGGATCTTAGGATCACCAC 60
||||| || |||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 9 TTTCACAGAATCATAGAAAAATCAAGAAAATGTCTGAATCAAGGAGCTTAGCCTCACCAC 68
Query 61 CAATGCTT-ATGATTCTTCTCAGCATTGTGATAGCTTCCTTCTTCAA-CACAACAGCTGG 118
||||| || ||||||||||||||| |||| ||||||||||||||||| ||| ||||||||
Sbjct 69 CAATG-TTGATGATTCTTCTCAGCCTTGTAATAGCTTCCTTCTTCAACCAC-ACAGCTGG 126
Query 119 ACAAATCGGAGTATGCTACGGGATGCTAGGCGAAACATTGCCAAGTCCATCAGACGTTGT 178
||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 127 ACAAATCGGAGTATGCTACGGGATGCTAGGCGATACCTTGCCAAGTCCATCGGACGTTGT 186
Query 179 GGCTCTTTACAAGA-AACAGAACATTCAGCGAATGCGGCTCTACGGCCCTGACCCAGACG 237
|||||||||||| | |||| ||||| ||||||||||||||||||||||||||||||| ||
Sbjct 187 GGCTCTTTACAA-ACAACAAAACATCCAGCGAATGCGGCTCTACGGCCCTGACCCAGGCG 245
Query 238 CTCTTGCCGCTCTCCGTGACTCTAACATAGAGCTCATCCTCGACGTTCCCAGTTCAGATC 297
|||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||
Sbjct 246 CTCTTGCCGCTCTCCGTGGCTCTGACATCGAGCTCATCCTCGACGTTCCCAGTTCAGATC 305
Query 298 TTGAACGTCTCGCCTCCAGCCAAACGGAGGCCGACAAGTGGGTTCAAGAAAACGTTCAGA 357
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 306 TTGAACGTCTCGCCTCCAGTCAAACGGAGGCCGACAAGTGGGTTCAAGAAAACGTTCAGA 365
Query 358 GCTACACCGACGGTGTCAGATTCCGGTACATCAACGTCGGAAATGAGGTGAAACCCTCAG 417
|||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 366 GCTACAGAGATGGTGTCAGATTCCGGTACATCAACGTTGGAAATGAGGTGAAACCCTCAG 425
Query 418 CT-GGGGGTGTTCTCTTACAAGCAATGCAAAACATCGAGAAAGCAGTTTCTGGAGCAGGG 476
| |||||| ||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 426 TTGGGGGGT-TTCTCTTACAAGCAATGCAGAACATCGAGAACGCGGTTTCTGGAGCAGGG 484
Query 477 CTTGGAGTCAAGGTCTCTACGGCTATAGCCACTGACACCACTACAGATACATTTCCTCCG 536
|||| |||||||||||| || |||||||||||||||||||| || ||||| | |||||||
Sbjct 485 CTTGAAGTCAAGGTCTCAACAGCTATAGCCACTGACACCACCACTGATACGTCTCCTCCG 544
Query 537 TCTCAGGGAAGGTTCACGGATGAGTATAAGAGCTTTCTCGAACCAGTGATAGGTTTCTTG 596
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 TCTCAAGGAAGGTTCAGGGATGAGTATAAGAGCTTTCTCGAACCAGTGATAGGTTTCTTG 604
Query 597 ATGAGCAAGCAATCTCCTTTGCTCGTGAATCTCTATCCTTACTTCAGCTACATGGGAGAC 656
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 605 GCAAGCAAGCAATCTCCCTTGCTCGTGAATCTCTACCCTTACTTCAGCTACATGGGAGAC 664
Query 657 ACGGCCAAGGTCCCTCTAGACTACGCTCTGTTCACCGCTCAGTCCACTGTTGCTGACGAT 716
|||||||| ||| |||||||||||||||||||||||| ||||||||||||| | |||||
Sbjct 665 ACGGCCAACATCCATCTAGACTACGCTCTGTTCACCGCCCAGTCCACTGTTGATAACGAT 724
Query 717 CC---GTACTCATACCAAAACCTATTTGACGCAAATCTCGACTCGGTTTATGCAGCATTG 773
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 725 CCAGGGTACTCATACCAAAACCTATTCGACGCAAATCTCGACTCGGTTTATGCAGCATTG 784
Query 774 GAGAAATC-GGGTGGAGGATCGTTAGAAATCGTGGTGTCGGAGAGCGGTTGGCCCACAGA 832
|||||||| ||| || |||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 785 GAGAAATCAGGG-GGCGGATCGTTGGAAATCGTGGTGTCGGAGACCGGTTGGCCCACAGA 843
Query 833 GGGAGGAGTCGGGACGAGTGTGGAAAACGCAAAGACTTATGTTAACAATTTGATACAACA 892
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 GGGAGCAGTCGGGACGAGTGTGGAAAACGCAAAGACTTATGTTAACAATTTGATACAACA 903
Query 893 TGTGAAGAATGGATCACCGAGAAGGCCAGGGAAAGCTATAGAAACTTATATATTCGCTAT 952
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 904 TGTGAAGAATGGATCACCGAGAAGGCCAGGGAAAGCTATAGAGACTTATATATTCGCTAT 963
Query 953 GCTT-GATGAGAATAAGAAGGAACCTGCGTTTGAGAAGTTTTGGGGACTTTTTCATCCGG 1011
| || |||||||||||||||||||| ||| |||||||||||||||||| |||||||| |
Sbjct 964 G-TTCGATGAGAATAAGAAGGAACCAACGTATGAGAAGTTTTGGGGACTGTTTCATCCAG 1022
Query 1012 ATCGACAGCCTAAGTATGAAGTTAATTTCAACTAATCTTTGGAGA 1056
|||||||| |||||||||||||||||||||||||||| || ||||
Sbjct 1023 ATCGACAGTCTAAGTATGAAGTTAATTTCAACTAATCCTTAGAGA 1067
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51791405557
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5