BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486169
Length=1079
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57270.1 | Symbols: BG1 | beta-1,3-glucanase 1 | chr3:211912... 1535 0.0
> AT3G57270.1 | Symbols: BG1 | beta-1,3-glucanase 1 | chr3:21191237-21193189
REVERSE LENGTH=1193
Length=1193
Score = 1535 bits (831), Expect = 0.0
Identities = 1002/1085 (92%), Gaps = 9/1085 (1%)
Strand=Plus/Plus
Query 1 CATCTCTTTCTTAACCT-A--ACGATGGATCTCCGATTCTTGGCGTCCTTGACCTTTCTT 57
|||||||||||| |||| | ||||||||||||||||||||||||||||||||| |||||
Sbjct 48 CATCTCTTTCTTCACCTAACGACGATGGATCTCCGATTCTTGGCGTCCTTGACCCTTCTT 107
Query 58 CTCGGTCTATTCTTCGCCAATACAATTCCAGCAGTTCGACAAGTCGGGGTTTGCTACGGA 117
|||||||||||||||| |||||||| |||| ||| | |||||||||| |||||||| |||
Sbjct 108 CTCGGTCTATTCTTCGTCAATACAAATCCAACAGGTGGACAAGTCGGCGTTTGCTATGGA 167
Query 118 AGAAACGGCGACAACCTCCCTTCGGCGGCAGAAACCGTCGAGCTCTTCAAGCAGAGAAAC 177
||||||||| ||||||||||||| | ||||||||| | | ||||||||| |||| ||||
Sbjct 168 AGAAACGGCAACAACCTCCCTTCACCAGCAGAAACCATTGCGCTCTTCAAACAGAAAAAC 227
Query 178 ATCCGACGAGTTAGGCTATACACTCCAGACCACGACGTTCTAGACGCCCTACGTGGCTCC 237
|||| ||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||
Sbjct 228 ATCCAACGAGTTAGGCTATACAGTCCGGACCACGACGTTCTAGCCGCCCTACGTGGCTCC 287
Query 238 AACATCGAGGTAACGCTGGGCCTTCCCAACTCTTATCTACAGAGCGTGGCATCGAGCCAA 297
|||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 288 AACATCGAGGTAACGCTGGGTCTTCCCAACTCTTACCTACAGAGCGTGGCCTCGAGCCAA 347
Query 298 TCACAAGCTAACACGTGGGTCCAAACCAACGTCATGAACTACGTGAATGGCGTCAAGTTC 357
|||||||||||| ||||||| |||||| ||||||||||||||| ||||||||||| ||||
Sbjct 348 TCACAAGCTAACGCGTGGGTACAAACCTACGTCATGAACTACGCGAATGGCGTCAGGTTC 407
Query 358 CGTTACATATCTGTTGGGAACGAAGTTAAGATCTCTGACTCTTATGCACAGTTCCTAGTC 417
|||||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||||
Sbjct 408 CGTTACATATCTGTTGGGAATGAAGTTAAAATCTCCGACTCTTACGCACAGTTCCTAGTC 467
Query 418 CCGGCCAT-GATAAACATTGACCGGGCGGTTTTAGCAGCCGGACTAGGTGGTCGTATCAA 476
|| ||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 468 CCTGCCATGGA-AAACATTGACCGGGCGGTTTTAGCAGCCGGACTCGGTGGTCGTATCAA 526
Query 477 GGTATCCACGGCGGTAGACATGGGAGTGCTCGGAGAGTCTTATCCACCATCGAAAGGTTC 536
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 527 GGTATCCACATCGGTAGACATGGGAGTGCTCCGAGAGTCTTATCCACCATCGAAAGGTTC 586
Query 537 GTTTAGGGGAGACGTTATGGTGGTAATGGAACCAATCATACGTTTCTTGGTAAGCAAGAA 596
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 GTTTAGGGGAGATGTTATGGTGGTAATGGAACCAATCATACGTTTCTTGGTAAGCAAGAA 646
Query 597 CTCTCCTTTACTCTTAAACCTCTACACTTACTTCAGCTACGCGGGAAATAAAGATCAAAT 656
||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||
Sbjct 647 CTCTCCTTTACTCTTAAACCTCTACACTTACTTCAGCTACGCGGGCAATGTAGGCCAAAT 706
Query 657 ACGACTCGATTACGCTCTCTTCACGGCTCCTCCAGGAATCGTTTTGGACCCTCCGAGATC 716
|| ||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||
Sbjct 707 CCGGCTCGATTACGCTCTCTTCACGGCTCCTTCAGGAATCGTTTCGGACCCTCCTAGATC 766
Query 717 TTACCAAAACCTATTTGATGCGATGCTCGATGCGATGCACTCGGCTCTAGAGAGATCCGG 776
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||
Sbjct 767 TTACCAAAACCTATTTGATGCGATGCTCGATGCGATGTACTCGGCTCTAGAGAAATCGGG 826
Query 777 TGGCGGATCGTTGGAAGTAGTTGTGGCAGAGACCGGATGGCCAACGGGAGGAGGAATCGA 836
||||| ||| |||||| |||||||||| ||||| |||||||||||||||||||||| |||
Sbjct 827 TGGCGCATCATTGGAAATAGTTGTGGCGGAGACTGGATGGCCAACGGGAGGAGGAACCGA 886
Query 837 TACAAACATACAGAATGCGGGAATTTATAACAATAATTTGATTAATCATGTGAAGAATGG 896
|||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 887 TACAAACATAGAGAATGCGAGAATTTATAACAATAATTTGATTAAGCATGTGAAGAATGG 946
Query 897 GACACCGAAGAGACCGGGGAGAGAAATCGAGACATATTTATTTGCCATGTATGACGAGGA 956
||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||| |
Sbjct 947 GACACCGAAGAGACCAGGGAAAGAAATCGAGACATATTTATTTGCCATTTATGACGAGAA 1006
Query 957 T-AAGAAGCCGACTCCTCCTTATGTTGAGAAGTTTTGGGGATTGTTCTATCCGAACAAGC 1015
| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1007 TCAA-AAGCCGACTCCTCCTTATGTTGAGAAGTTTTGGGGATTGTTCTATCCCAACAAGC 1065
Query 1016 AGCCTAAGTACGCTATTAACTTTGGTTGAACCGAACCGATATTCTAACCAAGG-AATGGT 1074
|||||||||| | |||||||||| |||| ||||||| |||||||| | |||| ||||||
Sbjct 1066 AGCCTAAGTATGATATTAACTTTTATTGAGCCGAACCAATATTCTATC-AAGGGAATGGT 1124
Query 1075 ATATT 1079
|||||
Sbjct 1125 ATATT 1129
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52861173885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5