BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486171
Length=1476
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57290.1 | Symbols: EIF3E, TIF3E1, ATEIF3E-1, INT-6, ATINT6,... 2422 0.0
> AT3G57290.1 | Symbols: EIF3E, TIF3E1, ATEIF3E-1, INT-6, ATINT6,
INT6 | eukaryotic translation initiation factor 3E | chr3:21196550-21199183
REVERSE LENGTH=1672
Length=1672
Score = 2422 bits (1311), Expect = 0.0
Identities = 1423/1478 (96%), Gaps = 3/1478 (0%)
Strand=Plus/Plus
Query 1 TTTTTACCTCATCGTCTCTGAAACTCCCATCTCTGCCGTCTAAAGAAGATTTTGCCACT- 59
|||||||||| |||||||||||||| |||||||||||||| ||||||||||||||| |
Sbjct 19 TTTTTACCTCGTCGTCTCTGAAACT-TCATCTCTGCCGTCTTAAGAAGATTTTGCCAGTG 77
Query 60 -GGGAAGCGGCGGAGATTTAGAGATTTGCGACGATGGAGGAAATCAAAGAGAACTATGAC 118
||||||||||||||||| ||||||| |||||||||||||||| |||| |||||||||||
Sbjct 78 CGGGAAGCGGCGGAGATTGAGAGATTAGCGACGATGGAGGAAAGCAAACAGAACTATGAC 137
Query 119 CTGACGCCACGAGTAGCGCCTAACCTGGACAGACACTTGGTGTTTCCTATACTCGAGTTC 178
|||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 138 CTGACGCCACTAATAGCGCCTAACCTGGACAGACACTTGGTGTTTCCTATATTCGAGTTC 197
Query 179 CTTCAAGAGCGTCAGCTTTACCCTGATGAGCAGATCCTGAAGTTTAAGATCGAGCTTTTG 238
||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||
Sbjct 198 CTTCAAGAGCGTCAGCTTTACCCTGATGAGCAGATCCTGAAGTCTAAAATCCAGCTTTTG 257
Query 239 AACCAGACAAACATGGTTGATTACGCCATGGATATTCACAAGAGCCTCTACCACACTGAA 298
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 258 AACCAGACGAACATGGTTGATTACGCCATGGATATTCACAAGAGTCTCTACCACACTGAA 317
Query 299 GACGCTCCTCAAGATATGGTGGAGAGAAGAGCAGAGGTTGTGGCTAGGCTCAAATCTTTG 358
|||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 318 GACGCTCCTCAAGAAATGGTGGAGAGAAGAACAGAGGTTGTCGCTAGGCTCAAATCTTTG 377
Query 359 GAGGAGGCTGCGGCTCCACTCGTGTCTTTTCTTTTGAACCCTAACGCTGTGCAGGAGCTA 418
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 GAGGAGGCTGCTGCACCACTCGTGTCTTTTCTTTTGAACCCTAACGCTGTGCAGGAGCTA 437
Query 419 AGAGCTGACAAGCAGTACAATCTCCAGATGCTCAAGGAACGCTACCAGATTGGTCCAGAC 478
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 438 AGAGCTGACAAGCAGTACAATCTCCAAATGCTCAAGGAACGCTACCAGATTGGTCCAGAC 497
Query 479 CAGATTGAGGCTCTGTACCAGTACGCCAAGTTTCAGTTTGAATGTGGGAACTATACTGGT 538
|||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 498 CAGATTGAGGCTTTGTACCAGTACGCCAAGTTTCAGTTTGAATGTGGCAACTATTCTGGT 557
Query 539 GCTGCTGATTATCTTTACCAGTACAGGACCCTGTGCTCCAACCTTGAGAGAAGTTTGAGT 598
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 558 GCTGCTGATTATCTTTACCAGTACAGGACCCTGTGCTCTAACCTTGAGAGGAGTTTGAGT 617
Query 599 GCCTTGTGGGGAAAGCTCGCATCTGAAATATTGATGCAAAACTGGGATATTGCTCTTGAA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 GCCTTGTGGGGAAAGCTCGCATCTGAAATATTGATGCAAAACTGGGATATTGCTCTTGAA 677
Query 659 GAGCTCAACCGTCTTAAAGAGATTATTGACTCAAAGAGTTTTTCATCGCCATTAAACCAG 718
||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 678 GAGCTTAACCGTCTCAAAGAGATTATTGACTCAAAGAGTTTTTCATCGCCGTTAAACCAG 737
Query 719 GTGCAGAACAGGATTTGGTTGATGCATTGGGGTCTCTATATCTTTTTTAACCATGATAAT 778
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 738 GTGCAGAACAGGATTTGGTTGATGCATTGGGGTCTGTATATCTTTTTTAACCATGATAAT 797
Query 779 GGAAGGACACAGATCATTGATCTTTTTAACCAAGACAAGTATCTGAATGCCATACAAACT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 798 GGAAGGACACAGATCATTGATCTTTTTAACCAAGACAAGTATCTGAATGCCATCCAAACT 857
Query 839 AGTGCTCCACACTTGCTGCGTTACTTGGCAACTGCTTTCATTGTCAACAAAAGGAGAAGA 898
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 858 AGTGCTCCACACTTGCTGCGCTACTTGGCAACTGCTTTCATTGTCAACAAAAGGAGAAGA 917
Query 899 CCTCAATTGAAAGAATTCATTAAGGTCATTCAGCAAGAGCACTACTCCTACAAAGATCCT 958
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 CCACAATTGAAAGAATTCATTAAGGTCATTCAGCAAGAGCACTACTCCTACAAAGATCCA 977
Query 959 ATTATCGAGTTCCTGGCATGTGTGTTTGTCAATTATGACTTTGATGGGGCTCAAAAGAAG 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 ATTATCGAGTTCCTGGCATGTGTGTTTGTCAATTATGACTTTGATGGGGCTCAAAAGAAG 1037
Query 1019 ATGAAAGAGTGTGAAGAGGTCATTGTGAATGATCCATTCCTTGGCAAACGAGTTGAGGAT 1078
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1038 ATGAAAGAGTGTGAAGAGGTCATTGTGAATGATCCATTCCTTGGCAAGCGAGTTGAGGAT 1097
Query 1079 GGAAACTTTTCAACAGTACCACTTAGAGATGAATTTCTTGAAAATGCCCGCCTATTTATC 1138
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1098 GGAAACTTTTCAACTGTACCACTGAGAGATGAATTTCTTGAAAATGCCCGCCTATTCGTC 1157
Query 1139 TTTGAAACCTACTGCAAAATTCATCAAAGGATTGACATGGGGGTGCTTGCTGAAAAATTG 1198
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1158 TTTGAAACCTATTGCAAAATTCATCAAAGGATTGACATGGGGGTACTTGCTGAAAAATTG 1217
Query 1199 AACCTGAACTATGAGGAGGCCGAGAGATGGATTGTGAACCTAATCCGCACCTCAAAGCTT 1258
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 AATCTGAACTATGAGGAGGCCGAGAGATGGATTGTGAACCTAATCCGCACCTCAAAGCTT 1277
Query 1259 GATGCCAAGATTGATTCCGAGTCAGGAACTGTAATCATGGAGCCTACTCAGCCCAACGTG 1318
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 GATGCCAAGATTGATTCTGAGTCAGGAACTGTAATCATGGAGCCTACTCAGCCCAACGTG 1337
Query 1319 CATGAGCAGTTGATAAACCACACCAAAGGCTTATCAGGACGGACTTACAAGTTAGTGAAT 1378
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1338 CATGAGCAGTTGATAAACCACACCAAAGGCTTATCAGGACGAACATACAAGTTAGTGAAT 1397
Query 1379 CAGCTCTTGGAACATACACAGGCGCAAGCAACTCGCTAATCAAATTTTTGCTGTGGAAAC 1438
|||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||| |
Sbjct 1398 CAGCTCTTGGAACACACACAGGCGCAAGCAACTCGCTAGTCAAAATTTTGCTGTGGAAGC 1457
Query 1439 CTTTCCTTGATAAAACTCAGCTTCGCTTGACTGGAATT 1476
||||||||||||||||||| ||||| ||||||||||||
Sbjct 1458 CTTTCCTTGATAAAACTCACCTTCGGTTGACTGGAATT 1495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72790790250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5