BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg486174

Length=538
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G57320.1 | Symbols:  | unknown protein; Has 30 Blast hits to...   529    1e-149


> AT3G57320.1 | Symbols:  | unknown protein; Has 30 Blast hits 
to 30 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa 
- 2; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr3:21209957-21210863 FORWARD 
LENGTH=625
Length=625

 Score =  529 bits (286),  Expect = 1e-149
 Identities = 361/394 (92%), Gaps = 17/394 (4%)
 Strand=Plus/Plus

Query  1    TAATTATTCGGGAAGAGAGGTTTATGATTTGAGCGGAAGCCTCCACAGCTGCCTGCCTAG  60
            ||| |||||||||||||||||||||||||||||| |  |     | ||||| |||   ||
Sbjct  68   TAACTATTCGGGAAGAGAGGTTTATGATTTGAGC-G--G-----A-AGCTG-CTG---AG  114

Query  61   AGAGGAAAATCATGGAGGATCATCATCATCTTCCCGAGAATCTGAAACCCTTCTTTCACA  120
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  115  AGAGGAAAATCATGGAGGATCATCATCATCTTCCCGAGAATTTGAAACCCTTCTTTCACA  174

Query  121  GAGCCACCGAAGCTCAGGAGCGATTGGCTAGGCTTGAAGCTGCTCTTGCGTCGACCAAGA  180
            ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  175  GAGCCACTGAAGCTCAGGAGCGATTGGCTAAGCTTGAAGCTGCTCTTGCGTCGACCAAGA  234

Query  181  CAGACATTCCGGATGCTAAACTTGTGGAGCAAAACAAACAGA-TTCAGTCAAAGCTCGAA  239
            ||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||
Sbjct  235  CAGACATTCCGGATGCTAAACTTGTGGAGGAAAACAAACA-ACTTCAGTCAAAGCTCGAA  293

Query  240  GAAGCTAACGCCACGGTGAAGCAAGAACAGACTAAGGTGAAGGAGTTGACCATTGAAAAC  299
            |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  294  GAAGCTAACGCCACTGTGAAGCAAGAACAGACTAAGGTGAAGGACTTGACCATTGAAAAC  353

Query  300  GCGAAGCAAAAGTATCGTATATTGCATCTTGTGCGGGCGT-TAAGGGAAGCAGATGAGAA  358
            || ||||| ||||| ||||||||||||||||||||||| | ||| ||| || ||| ||||
Sbjct  354  GCCAAGCATAAGTACCGTATATTGCATCTTGTGCGGGC-TCTAAAGGATGCTGATCAGAA  412

Query  359  GCTTGAGAAACTCTCTAAATGATTTCATTCTTCT  392
            ||||||||  ||||||||||||||||||||||||
Sbjct  413  GCTTGAGAGGCTCTCTAAATGATTTCATTCTTCT  446



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25770117411


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5