BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486177
Length=1383
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57340.1 | Symbols: | Heat shock protein DnaJ, N-terminal w... 2124 0.0
AT3G57350.1 | Symbols: | Nucleoporin interacting component (Nu... 154 2e-36
> AT3G57340.1 | Symbols: | Heat shock protein DnaJ, N-terminal
with domain of unknown function (DUF1977) | chr3:21218973-21220485
FORWARD LENGTH=1407
Length=1407
Score = 2124 bits (1150), Expect = 0.0
Identities = 1317/1395 (94%), Gaps = 22/1395 (2%)
Strand=Plus/Plus
Query 2 CCATTAGTCGTCTTGTAAATTCTTCGAATCTGAAATCCGATCGGGCTCGCCGTTTGTTCT 61
||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 22 CCATTAGTCATCTTGTAAATTCTTCGAATCTGAAATCCGATCGGGCTCG-C--TTGTTCT 78
Query 62 GATTTC-TGATTGCTAGGACATGGATGGAAACAAAGACGATGCGTTGAAGTGCTTGAAAA 120
|||||| ||| | | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 79 GATTTCGTGA-GGGT-GAACATGGATGGAAACAAAGACGATGCGTTGAAGTGCTTGAAAA 136
Query 121 TCTGCAAAAATGCTATGGAAGCTGGAGATCGACCTCGCGCTTTGAAATTCCTGGCTAAAG 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 TCTGCAAAAGTGCTATGGAAGCTGGAGATCGACCTCGCGCTTTGAAATTCCTGGCTAAAG 196
Query 181 CTCGTCGTCTTGATCCGAATCTCCCGATCGATGATCTCGTATCTGAGCTTAATGACAACA 240
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 197 CTCGTCGTCTTGATCCAAATCTCCCGATCGATGATCTCGTATCTGAGCTTAACAACAACA 256
Query 241 AATCAGACGAATCAGGATCTGCAAAATCGCCTGGATCTGCAACCGAAAAAGATTC-GCCT 299
||||||||||| ||||||||||||||||||||||||||||| | | ||| ||||| ||
Sbjct 257 AATCAGACGAACCAGGATCTGCAAAATCGCCTGGATCTGCAGCAGCAAAGGATTCTTCC- 315
Query 300 AATTCTTCAGATCGGCCTTCTTTACGCCAACGTGGATCGT------CGTCATCGTCTTCT 353
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 316 AATTCTTCAGATCGGCCTTCTTTACGTCAACGTGGATCGTCAACAACGTCATCGTCTTCT 375
Query 354 ACCATGTCTTACACTGAAGAACAGATCTCAATCGTGAGAAAGATAAAATCGAAGAAGGAT 413
| ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 376 TCGATGTCCTACACTGAAGAACAGATCTCAATCGTGAGAAAGATAAAATCTAAAAAGGAT 435
Query 414 TATTACGAGATCTTAGGTCTTGAATCCAACTGTTCAGTGGATGATGTGAGGAAAGCTTAT 473
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 436 TATTACGAGATCTTAGGTCTTGAATCCAACTGTTCAGTGGATGATGTGAGAAAAGCTTAC 495
Query 474 CGGAAACTCTCTTTGAAAGTTCATCCTGATAAGAATCAAGCTCCTGGTTCAGAAGAAGCT 533
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 496 CGGAAACTCTCATTGAAAGTTCATCCAGATAAGAATCAAGCTCCTGGTTCAGAAGAAGCT 555
Query 534 TTCAAATCCGTCTCCAAGGCGTTTCAATGCTTAAGCAACGAGGAAGCTAGGAAAAAATAC 593
|||||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||||
Sbjct 556 TTCAAATCCGTCTCCAAGGCATTTCAATGCTTGAGCAATGACGAAGCTAGGAAAAAATAC 615
Query 594 GATGTCAGTGGTTCCGATGAACCAATCTATCAGCCACGACGATCTGCGAGAAGTAATGGA 653
||||| ||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 616 GATGTAAGTGGCTCCGATGAACCAATCTATCAACCACGTCGATCTGCTAGAAGTAATGGA 675
Query 654 TTCAATGGTGGATACTACTACGAAGACGAATTCGATCCCAACGAGATTTTCCGAAGCTTC 713
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 TTCAATGGTGGATACTATTACGAAGACGAATTCGATCCCAACGAGATTTTCCGAAGCTTC 735
Query 714 TTTGGTGGAGGAGGATTCGGTGGAGGAGGAATGCCTCCTGCGACTGCTCAATTCCGATCA 773
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 736 TTCGGTGGAGGAGGATTCGGTGGTGGAGGAATGCCTCCTGCGACTGCTCAATTCCGATCA 795
Query 774 TTCAATTTCGGAGCTACTCGTCATAGAACAGCTAATAACAATCAAGCTCCTGATGCAGGT 833
|| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 796 TTTAATTTCGGAGCTACTCGTCAGAGAACAGCTAATAACAATCAAGCACCTGATGCAGGT 855
Query 834 TTCAATGCTCGTATACTTCTCCAGCTTCTTCCTGTTGTGTTCATACTTCTGCTCAACTTC 893
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 856 TTCAATGCTCGTATACTTCTCCAGCTTCTTCCTGTTGTCTTCATACTTCTGCTCAACTTC 915
Query 894 ATGCCTTCTTCTCAACCAGTTTACCAACTCTCTGCAACTTATCCTTACCATTACAAGTTC 953
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 916 ATGCCTTCTTCTCAACCAGTTTACCAACTCTCTGCAACTTATCCTTACCAGTACAAGTTC 975
Query 954 ACTACACAGAAAGGTGTCAATTACTTTGTCAAATCGTCTAAATTCGAGCAGGATTACCCA 1013
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 976 ACTACACAGAAAGGTGTCAATTACTTTGTGAAATCGTCTAAATTCGAGCAGGATTATCCA 1035
Query 1014 CAAGATAGCAACGATCGACACACGCTGGAAGAACAAGTTGAGAGAGATTATGTGTCTATA 1073
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 CGAGATAGCAACGATCGACACACGCTGGAAGAACAAGTTGAGAGAGATTATGTGTCTATA 1095
Query 1074 CTTAGTCAGAATTGTAGGTATGAGCTGCAGAGGAAACAATGGGGATTTGTTCGTGAAACG 1133
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1096 CTTAGTCAGAATTGTAGGTATGAGATGCAGAGGAAACAATGGGGATTTGTTCGTGAAACG 1155
Query 1134 CCTCATTGTGACATGATGAGGAGATTTGATACAGCTGCTGCTTAAAACAACTGAAGCTAG 1193
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1156 CCTCATTGTGACATGATGAGGAGATTTGATACAGCTGCTGCTTGAAACAACTGAAGCTAG 1215
Query 1194 TAGTACCAAGAACGAGGCACACATTGGTAATGAATGATCAGCTTATAAA-CATTTATCAT 1252
|| |||| || |||||||||||||||||||||| ||||||||||||| | ||||| ||
Sbjct 1216 TA---CCAACAATGAGGCACACATTGGTAATGAATCATCAGCTTATAAAACTTTTATAAT 1272
Query 1253 GTCAATGCCTTCACGTGTCAAACTGATATATGtttttgtttt-t---gttttGGATTATA 1308
||||||||||||||| ||||||||| |||||||||||||||| | |||||||||||||
Sbjct 1273 GTCAATGCCTTCACGAGTCAAACTGGTATATGTTTTTGTTTTCTTTTGTTTTGGATTATA 1332
Query 1309 ACGCTTTAGAACCTAACATACGATCTTTGGATTTTGTGTGATTATCTCTATATTAAGATT 1368
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1333 ATGCTTTAGAACCTAACATACGATCTTTGGATTTTGTGTGATTATCTCTATGTTAAGATT 1392
Query 1369 TTGTTTTTGCTAACC 1383
||| |||||||||||
Sbjct 1393 TTGCTTTTGCTAACC 1407
> AT3G57350.1 | Symbols: | Nucleoporin interacting component (Nup93/Nic96-like)
family protein | chr3:21220387-21225305 REVERSE
LENGTH=2802
Length=2802
Score = 154 bits (83), Expect = 2e-36
Identities = 89/92 (97%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 1292 ttttgttttGGATTATAACGCTTTAGAACCTAACATACGATCTTTGGATTTTGTGTGATT 1351
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2795 TTTTGTTTTGGATTATAATGCTTTAGAACCTAACATACGATCTTTGGATTTTGTGTGATT 2736
Query 1352 ATCTCTATATTAAGATTTTGTTTTTGCTAACC 1383
|||||||| ||||||||||| |||||||||||
Sbjct 2735 ATCTCTATGTTAAGATTTTGCTTTTGCTAACC 2704
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68122139565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5