BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486180
Length=785
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57360.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1229 0.0
AT3G02370.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 621 3e-177
> AT3G57360.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G02370.2);
Has 122 Blast hits to 122 proteins in 54 species: Archae -
0; Bacteria - 0; Metazoa - 74; Fungi - 4; Plants - 41; Viruses
- 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr3:21225540-21226692
FORWARD LENGTH=867
Length=867
Score = 1229 bits (665), Expect = 0.0
Identities = 746/785 (95%), Gaps = 6/785 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGAAAAAGACTGGGAAGTTTCTTCTTCAAGCGATAACGAAGCTGGTTTTCCAAAC 60
|||||||||||||||||||||| ||||||||| ||||| ||||||| |||||||||||||
Sbjct 32 ATGGAGGAAAAAGACTGGGAAGCTTCTTCTTCGAGCGAAAACGAAGGTGGTTTTCCAAAC 91
Query 61 GATGATGACGAAGAGTTTCATTCTGGTGGTTCAGTGCCCAAGTTACAGTTCAGAGTAGGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 92 GATGATGACGAAGAGTTTCATTCTGGTGGTTCAGTGCCCAAGTTACAGTTCAGAGTAGGA 151
Query 121 TCTTCCAAGGCTCGTTGGATTGCTGAATTAGGAATGGCTGAAGTTGAGGTTAAAAGGGGA 180
||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||
Sbjct 152 TCTTCCAAGGCTCGTTGGATTACTGAACTAGGAATGGCGGAAGTTGAGGTTAAAAGGGGA 211
Query 181 AAACTTTGGACGACAACTGGAATCATTCGTAGTGGAAAGACATATTGCTTCATAGAAGAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 212 AAACTTTGGACGACAACTGGAATCATTCGTAGTGGAAAGACATATTGCTTCATAGAAGAG 271
Query 241 GCTCTGTATTTGAGTGAAATAGGAGAGTTACAGATCTTGGGTAATGAGGATGACATAGTG 300
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 272 GCTCTGTATTTGAGTGAAATTGGAGAGTTACAGATCTTAGGTAATGAGGATGACATAGTG 331
Query 301 ATCCCATTGAAGGACTTGTATGAGAAAATGGCAGAGGAAAAAAGCGGTTGCTGTTGGGAA 360
||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||
Sbjct 332 ATCCCATTGAAGGACTTGTATGAGAAAATTGCAGAGGAGAAAAGCGGTTGCTCTTGGGAA 391
Query 361 AACTATGAGGTTTATAGATACTTAAAGGGTCTAGGTTACATCCTAGGCAGGAATGGAATT 420
||||| ||||||||||||||||| ||||||||||||||||||||||| ||| ||||| ||
Sbjct 392 AACTACGAGGTTTATAGATACTTGAAGGGTCTAGGTTACATCCTAGGTAGGCATGGAGTT 451
Query 421 TCTTGGACGTTAAAGGATGCTGCAATTACGAGACCAAATGGTGAAGAAGAGTCAGCTTGT 480
||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 452 TCTTGGACGTTAAAGGATGCTGCAA----GA--CCGAATGGTGAAGAAGAGTCAGCTTGT 505
Query 481 GCAGGTGAATGTCTTGAAGACAAGGATACTGTAACTAAACTCTTGGGAGATATGCAGATT 540
|| |||||||||| || |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 506 GCTGGTGAATGTCCTGCAGACAATGATACTGTAACTAAACTCTTGGGAGATATGCAGATT 565
Query 541 TGTGATGCAAAAGCTGTGTTTGACGTGTATCTACCAAACAGCCGGTTCAAGAAGTCTTCT 600
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 TGTGATGCAAAAGCGGTGTTTGACGTGTATCTACCAAACAGCCGGTTCAAGAAGTCTTCT 625
Query 601 CCTGGTGAACCAAGCTTTGTAGCTTGCTTCTCTGGGGACTCTCCACCAAGCAAAGAAGAT 660
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 626 CCTGGTGAACCAAGCTTTGTGGCTTGCTTCTCGGGGGACTCTCCACCAAGCAAAGAAGAT 685
Query 661 ATTAAAGTCCTGCAAAAGCGAATAGCTGCACCATTAATGTTCTGTCATGTCGCTCAGGGC 720
|||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||
Sbjct 686 ATTAAAGTCCTGCAAAAGCGCATAGCTGCACCATTAACATTCTGTCATATCGCTCAGGGC 745
Query 721 CGTGCCAGTTTCTTTTCTTTCAGTTCCATAGACCTTCCTGTCTTACCATAAAATGTAACA 780
||||||||||||||||| |||||||| |||||||| ||||||||| ||||||||||||||
Sbjct 746 CGTGCCAGTTTCTTTTCCTTCAGTTCTATAGACCTCCCTGTCTTATCATAAAATGTAACA 805
Query 781 AAAAA 785
|||||
Sbjct 806 AAAAA 810
> AT3G02370.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT3G57360.1).
| chr3:484491-485614 FORWARD LENGTH=751
Length=751
Score = 621 bits (336), Expect = 3e-177
Identities = 573/683 (84%), Gaps = 33/683 (5%)
Strand=Plus/Plus
Query 4 GAGGAAAAAGACTGGGAAGTTTCTTCTTC-AAGCGATAACGAAGCTGGTTTTCCAAACGA 62
||||| ||||||||||||| ||| || | || || |||||||||||||| | | | |
Sbjct 1 GAGGAGAAAGACTGGGAAGGTTC-TCCGCTGAGTGAAAACGAAGCTGGTTTACTATGCTA 59
Query 63 TGATGACGAAGAGTTTC-ATTCTGGTGGTTCAG-TGCCCAAGTTACAGTTCAGAGTAGGA 120
|||||||||||| | || ||| ||||||| ||| | ||||| ||||| ||||||||||||
Sbjct 60 TGATGACGAAGAATATCAATT-TGGTGGTCCAGCT-CCCAAATTACAATTCAGAGTAGGA 117
Query 121 TCTTCCAAGGCTCGTTGGATTGCTG----A--A-TTAGGAATGGCTGAAGTTGAGGTTAA 173
|| |||||||||||||||| ||||| | | ||||||||||| ||||||||||| ||
Sbjct 118 TCCTCCAAGGCTCGTTGGAATGCTGAATTAGGATTTAGGAATGGCCGAAGTTGAGGTCAA 177
Query 174 AAGGGGAAAACTTTGGACGACAACTGGAATCATTCGTAGTGGAAAGACATATTGCTTCAT 233
|||||| ||||||||||||||||||||||| || |||| ||||| ||||||||||||||
Sbjct 178 AAGGGGTAAACTTTGGACGACAACTGGAATTATCCGTACCGGAAAAACATATTGCTTCAT 237
Query 234 AGAAGAGGCTCTGTATTTGAGTGAAATAGGAGAGTTACAGATCTTGGGTAATGAGGATGA 293
||||||||||||||||||||||||||| |||||||| ||| |||||||| ||||||||||
Sbjct 238 AGAAGAGGCTCTGTATTTGAGTGAAATTGGAGAGTTGCAGCTCTTGGGTGATGAGGATGA 297
Query 294 CATAGTGATCCCATTGAAGGACTTGTATGAGAAAATGGCAGAGGAAAAA-AGCGGTTGCT 352
| ||||||| |||||||||||||||||| | |||| || |||| |||| | || ||||
Sbjct 298 CGTAGTGATTTCATTGAAGGACTTGTATGGGGAAATAGCGGAGGGAAAATAT-GGCTGCT 356
Query 353 GTTGGGAAAACTATGAGGTTTATAGATACTTAAAGGGTCTAGGTTACATCCTAGGCAGGA 412
||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 357 GTTGGGAAAACTACGAGGTTTATAGATACTTAAAGGGTCTTGGTTACATTCTAGGCAG-A 415
Query 413 -ATGGAATTTCTTGGACGTT-AAAGGATGCTGC-AATTACGAGACCAAATGGTGAAGAAG 469
||||| || ||||||| | ||| |||||| ||| || | ||||| || |||||| |
Sbjct 416 CATGGAGTTCCTTGGAC-TACAAAATATGCTGTGAAT-ACTACACCAAGTGATGAAGATG 473
Query 470 AGTCAGCTT-GTGCAGGTGAATGTCTTG-AAGACA-AGGA-TACTGTAACTAAACTCTTG 525
||||| ||| |||| | |||| | || |||||| || | | |||| || |||||| ||
Sbjct 474 AGTCA-CTTTGTGCTGCAGAATTT-TTCCAAGACAGAG-ACT-CTGTTACCAAACTCCTG 529
Query 526 GGAGATATGCAGATTTGTGATGCAAAAGCTGTGTTTGACGTGTATCTACCAAACAGCCGG 585
| |||||||| || |||||||||| | | |||||||| |||||| | |||||||||| |
Sbjct 530 AGTGATATGCATATCTGTGATGCAAGACCGGTGTTTGATGTGTATTTGCCAAACAGCCAG 589
Query 586 TTCAAGAAGTCTTCTCCTGGTGAACCAAGCTTTGT-AGCTTGCTTCTCTGGG-GACTCTC 643
|||||||||||||||||||||||||| |||||||| | |||||||||| ||| |||||||
Sbjct 590 TTCAAGAAGTCTTCTCCTGGTGAACCGAGCTTTGTCA-CTTGCTTCTC-GGGAGACTCTC 647
Query 644 CACCAAGCAAAGAAGATATTAAA 666
||||||| |||||||| ||||||
Sbjct 648 CACCAAGTAAAGAAGAAATTAAA 670
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38177951720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5