BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486181
Length=1736
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57380.1 | Symbols: | Glycosyltransferase family 61 protein... 2285 0.0
> AT3G57380.1 | Symbols: | Glycosyltransferase family 61 protein
| chr3:21229802-21231729 FORWARD LENGTH=1772
Length=1772
Score = 2285 bits (1237), Expect = 0.0
Identities = 1541/1682 (92%), Gaps = 44/1682 (3%)
Strand=Plus/Plus
Query 66 AGAGCATCAAAAGTCGATCAGAGGCATCGT-AAAAATCAAAACTTTGCTTGT-TGGTTTC 123
||| |||||||||||||| ||| ||||| | ||||||||||||||||||||| ||||||
Sbjct 123 AGAACATCAAAAGTCGATTAGAAGCATC-TAAAAAATCAAAACTTTGCTTGTGGGGTTTC 181
Query 124 TTCTTTTGTTCTACAGAAAATGGTTCAATACAAGAGACTAATCAAAAAAGGGGAAAAGCT 183
||||||||||| | ||||||||||||||||||| |||||||| |||||||| |||||||
Sbjct 182 TTCTTTTGTTCGATAGAAAATGGTTCAATACAAAAGACTAATTAAAAAAGGAGAAAAGCA 241
Query 184 TAGACTTTCAGTAAAAGAAGAAGGTGGCTCCGGTGCCAACGTCGTCGCCGTCTCCGGCGG 243
||||||||| || |||||||||||| ||||||||| || |||| | |||||||||||
Sbjct 242 TAGACTTTCGGT---AGAAGAAGGTGGTTCCGGTGCCTCCGCCGTCACTGTCTCCGGCGG 298
Query 244 TG-GCTACTCAAAGACAACTAAACAGAAGATtctctttattatctttctctctttactct 302
|| | |||||||||||| | ||||||||| ||||||| | ||||||||||||||| ||||
Sbjct 299 TGTG-TACTCAAAGACAGCCAAACAGAAGCTTCTCTTAACTATCTTTCTCTCTTTGCTCT 357
Query 303 catgctgttacatcttcagcttttcctctttctctcttctAGATGCTTTTAGCAGAG-AG 361
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
Sbjct 358 CATGCTGTTACATCTTCAGCTTCTCCTCTTTCTCTCTTCTAGGTGCTTTTAGCAGAGAAA 417
Query 362 GTTAAAGGATTTGGTCCTTATGAATTGTTCATTGCACCTCTTTGTTCAGGAACCTCAAAT 421
| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 418 G-TAAAGGATTTGGTCCTTATGAACTGTTCATTGCACCTCTTTGTTCAGGAACCTCTAAT 476
Query 422 GGAACAATTTGTTGTGACAGAACCGGTTTTAGATCCGACGTTTGTATCATGAAAGGAGAT 481
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 477 GGAACAATTTGTTGTGACAGAACCGGTTCTAGATCCGACGTTTGTATCATGAAAGGAGAC 536
Query 482 GTTAGGACACACTCTGCTTCTTCATCAGTCTTCCTCTTCACGTCCCTCAAAAACAAGA-T 540
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 537 GTTAGGACACACTCTGCTTCGTCATCAGTCTTCCTCTTCACTTCCCTCAAAAACAAGACC 596
Query 541 AACGATCACTG-GAAAGATCAAGCCTTACACTAGAAAATGGGAAACTAGTGTGATGCAAA 599
|| |||||| | ||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 597 AA-GATCAC-GAAAAAGATCAAACCTTACACAAGAAAATGGGAAACAAGTGTGATGCAAA 654
Query 600 CAGTTCAACAACTCAATCTCGTTTACAGAGATGaaaaaaaCAATTATTTAGTC-TCTGTT 658
|||||||| |||||||||||||||||||||||||| ||||||||| ||||||| ||| |
Sbjct 655 CAGTTCAAGAACTCAATCTCGTTTACAGAGATGAAGAAAACAATTCTTTAGTCGTCTCCT 714
Query 659 GATGAACATAATAACAACATCTGCGATGTGTTCTATAACGTTCCTGCTGTGTTTTTCTCA 718
|| | ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 -CTG----T--TAATGACATCTGCGATGTGTTCTATAACGTTCCTGCTGTGTTTTTCTCA 767
Query 719 ACAGGTGGATATACCGGAAATGTTTACCATGAATTCAACGACGGAATCATCCCTTTGTTC 778
|| ||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 768 ACTGGTGGATATACAGGAAATGTTTACCACGAATTCAACGATGGAATCATCCCTTTGTTC 827
Query 779 ATCACTTCACATCATTTCAACAAGAAGGTTGTGTTTGTGATTGTTGAGTATCATAGTTGG 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 ATCACTTCACATCATTTCAACAAGAAGGTTGTGTTTGTGATTGTTGAGTATCATAGTTGG 887
Query 839 TGGGTTATGAAATATGGAGATATCGTTTCTCAGCTATCCGATTATCCTCCTGTCGACTTT 898
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 888 TGGATTATGAAATATGGAGATATCGTTTCTCAGCTATCAGATTATCCTCCTGTCGACTTT 947
Query 899 AATGGCGACAAGAGAACGCAATGTTTCAAGGAAGCTATTGTGGGATTGAAGATTCACGAC 958
|| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 948 AACGGCGACAAGAGAACACATTGTTTCAAGGAAGCTATTGTGGGATTGAAGATTCACGAC 1007
Query 959 GAGTTAACCGTTGATTCATCGTTGATGCTTGGGAATAAAACGATTCTTGATTTCAGAAAT 1018
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1008 GAGTTAACCGTTGAATCATCGTTGATGCTTGGGAATAAAACAATTCTTGATTTCAGAAAT 1067
Query 1019 GTGTTGAATCAGGCTTATTGGCCGCGTATCCGTGGATTGAGTCAAGAGGAAGAACTCGAG 1078
||| || |||||||||||||||| ||||||| |||||||| |||||||||||||||| ||
Sbjct 1068 GTGCTGGATCAGGCTTATTGGCCACGTATCCATGGATTGATTCAAGAGGAAGAACTCAAG 1127
Query 1079 GCAGCAAACAAGACCGGTAAAAGGGTTCAAGAAGACGGTTTCAAGAAACCGAA-ATTGGT 1137
||||| ||| | | | | | ||||||||||||||||||||| || ||||||
Sbjct 1128 GCAGCTAAC-A-A---G----A-----C-AGAAGACGGTTTCAAGAAACC-AATATTGGT 1171
Query 1138 GATTCTGTCGAGAAATGGATCGAGAGAGATACTCAATGATG-GTCTTTTGGTGGCATTAG 1196
||||||||| |||||||||||||| |||||||| ||||| | |||||||||| | |||||
Sbjct 1172 GATTCTGTCTAGAAATGGATCGAGGGAGATACTAAATGA-GAGTCTTTTGGTTGAATTAG 1230
Query 1197 CCGAGGAAATCGGATTCATCGTTTATGTTTTGAGACCGGATAAAACAACAGAGCTGGCAA 1256
| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1231 CTGAGGAAATTGGATTCATCGTCCATGTTTTGAGACCGGATAAAACAACAGAGCTGGCAA 1290
Query 1257 AAATCTACAAATGTTTGAATTCTAGCGATGTGATGATCGGTGTTCACGGAGCTGCAATGA 1316
||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1291 AAATCTACAGATGTTTGAATTCTAGTGATGTGATGATTGGTGTTCACGGAGCTGCAATGA 1350
Query 1317 CACATTTCCTTTTCATGAAACCGAAAACTGTCTTTATACAGATTATACCAATAGGAACCG 1376
||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1351 CACATTTACTTTTCTTGAAACCGAAAACAGTCTTTATACAGATTATACCAATAGGAACCG 1410
Query 1377 AATGGGCAGCTGAGACTTACTATGGAAAACCAGCCAAGAAGATGAGATTGAAGTACATTG 1436
||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1411 AATGGGCTGCTGAGACTTACTATGGTAAACCAGCTAAGAAGATGAGATTGAAGTACATTG 1470
Query 1437 GTTACAAGATTAAACCGAAAGAGAGCTCTTTATATGATGAATATGGCAAAGATGATCCCA 1496
||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||
Sbjct 1471 GTTACAAGATTAAACCGAAAGAGAGCTCTTTGTACGATGAATATGGCATCGATGATCCCA 1530
Query 1497 TAATCCGAGATCCTAAGAGTTTTACTCAAAAAGGATGGGACTACACTAAGAAGATTTATC 1556
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1531 TTATCCGAGATCCTAAGAGTTTTACTCAAAAAGGATGGGATTACACTAAGAAGATTTATC 1590
Query 1557 TCGAGCGCCAGAACGTGAAGCTTGATTTGAAAAGATTCAGGAAACCGTTGTCTCGTGCTT 1616
| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1591 TTGAGCGCCAAAACGTGAAGCTTGATTTGAAAAGATTTAGGAAACCGTTGTCTCGTGCTT 1650
Query 1617 ACGATTTCTCGATGAAGCGAATTGGACCGGTGTATAGCAGTCACAAACCGGATGTTACTA 1676
| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
Sbjct 1651 ATGATTTCTCGATGAAGCGAATTGGACTGGTGTATATCAGTCACAAACCGGATGTTACCA 1710
Query 1677 ATTAAACCGAG-TTTGAGATTGTATAA-ACTAGTTTTGGAGATGTAAATATTTTGTACAG 1734
||||||||| | ||||||||||||||| | || ||||||||||||||| |||||||||||
Sbjct 1711 ATTAAACCGGGGTTTGAGATTGTATAATA-TAATTTTGGAGATGTAAACATTTTGTACAG 1769
Query 1735 AG 1736
||
Sbjct 1770 AG 1771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85842931950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5