BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486183
Length=1544
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57390.1 | Symbols: AGL18 | AGAMOUS-like 18 | chr3:21233701-... 1173 0.0
> AT3G57390.1 | Symbols: AGL18 | AGAMOUS-like 18 | chr3:21233701-21235911
FORWARD LENGTH=1156
Length=1156
Score = 1173 bits (635), Expect = 0.0
Identities = 724/765 (95%), Gaps = 13/765 (2%)
Strand=Plus/Plus
Query 788 ATGGAGCAAATTCTTTCCAGATATGGATACACTACTGCGTCTACTGAGCAT--A-AGCAA 844
||||||||||||||||| ||||||||||||||||||||||| ||||||||| | | |||
Sbjct 393 ATGGAGCAAATTCTTTCTAGATATGGATACACTACTGCGTCCACTGAGCATAAACAACAA 452
Query 845 AGAGAAAAACAACTTCTAATTTGTGCTTCACATGAAAACGAAGTTGTGTTGCGAAATGAT 904
|||||| | ||||||||||||||||||||||||| ||| |||| ||||||||||||||||
Sbjct 453 AGAGAACACCAACTTCTAATTTGTGCTTCACATGGAAATGAAGCTGTGTTGCGAAATGAT 512
Query 905 GATTCTATGAAGGGAGAACTTGAAAGATTACAGCTTGCAATTGAGAGACTTAAGGGTAAG 964
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 GATTCTATGAAGGGGGAACTTGAAAGATTACAGCTTGCAATTGAGAGACTTAAGGGTAAG 572
Query 965 GCGCTTGACGGTATGAGTTTCCCGGATCTTATTTCTCTTGAAAACCAGTTGAACGAGAGC 1024
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 573 GAGCTTGAAGGTATGAGTTTCCCGGATCTTATTTCTCTTGAAAACCAGTTGAACGAGAGC 632
Query 1025 TTGCATAGTGTCAAGGATCAAAAGACACAAATCCTGCTCAACCAGATTGAAAGATCCAGG 1084
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 633 TTGCATAGTGTCAAGGATCAAAAGACACAAATCCTGCTCAACCAGATTGAGAGATCCAGG 692
Query 1085 TTACAGGA-AAAAAGAGCATTGGAAGAAAACCAAATCTTGCGCAAACAGGTAGAGCTGTT 1143
||||||| ||||| |||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 693 ATACAGGAGAAAAA-AGCATTGGAAGAAAACCAAATCTTGCGCAAACAGGTTGAGATGTT 751
Query 1144 GGGGAGAGGTTCAGGACCAAAAGTGTTGAACGAAAGGCCTCAAGTTTCTAGCCCAGAAGC 1203
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 752 GGGGAGAGGTTCAGGACCAAAAGTGTTGAATGAAAGGCCTCAAGATTCTAGCCCAGAAGC 811
Query 1204 CGATCCCGAGAGCTCTTCATCAGACGAGGATGAGAATGACAACGAGGAGCACCATTCCGA 1263
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 812 CGATCCCGAGAGCTCTTCATCAGAAGAGGATGAGAATGACAACGAGGAGCACCATTCCGA 871
Query 1264 CACTTCCTTGCAGTTGGGGTTGTCGTCGACGGGGTATTGCACAAAGAGGAAGAAGCCGAA 1323
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 872 CACTTCCTTGCAGTTGGGGTTGTCGTCGACGGGGTATTGCACAAAGAGAAAGAAGCCGAA 931
Query 1324 GATCGAACTGGTCTGCGATAACTCTGGAAGTCAAGTGGCTTCTGATTGATTGAAACGATT 1383
||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||
Sbjct 932 GATCGAACTGGTCTGCGATAACTCTGGGAGTCAAGTGGCTTCTGATTGATGGAATCGATT 991
Query 1384 ATTCTTCTAATCCTGGT-GTTTAGGGTCTTCTCTATGTATCTTCTTGTTCCGGGCTGTTC 1442
||| ||||||| ||||| |||||||| | |||||||| |||||||||| | ||||||||
Sbjct 992 ATTTTTCTAATTCTGGTTGTTTAGGGG-T-CTCTATGTGTCTTCTTGTTTCTGGCTGTTC 1049
Query 1443 TTTTGCTTTATTTCATCTCAAGTAGAGTTTTCTTAATGTTTAGGTG-AACATTTTTCC-T 1500
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1050 TTTTGCTTTATTTCATCTCAAGTAGAGTTTTCTTAATGTTTAGGTGGAACATTTTTCCAT 1109
Query 1501 CAATCAAGAAGG-ATTTGATCAAATCAATAACATTAGATTTTCTT 1544
||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1110 -AATCAAGAAGGGATTTGATCAA-TCAATAACATTAGATTTTCTT 1152
Score = 438 bits (237), Expect = 6e-122
Identities = 306/336 (91%), Gaps = 18/336 (5%)
Strand=Plus/Plus
Query 26 CCTCCTATATATACAAAatctttctcaatctctctacttgtttcctctg-t-tc-tcatc 82
|||||||||||||||||||||| ||||||||||||||||||||||| | || | |||
Sbjct 59 CCTCCTATATATACAAAATCTTAAGAAATCTCTCTACTTGTTTCCTCTGTTATCATAATC 118
Query 83 tcttctctc--ta-------tc-tcttc-ttTACCCTGtttttttttttATTCTACAGAG 131
||||||||| || || ||||| ||||||||||||||||||| |||| ||||||
Sbjct 119 TCTTCTCTCTATATCTCTTCTCTTCTTCTTTTACCCTGTTTTTTTTTTCATTCCACAGAG 178
Query 132 CCCAGATTGATTGATTTTGTTGTTCAGAGAGATATGGGGAGAGGAAGGATTGAGATTAAG 191
||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 179 CCCAGGTTGATTGATTTTGTTATTC--AGAGATATGGGGAGAGGAAGGATTGAGATTAAG 236
Query 192 AAGATTGAGAATGTCAACAGTCGTCAAGTCACTTTCTCTAA-ACGACGAAACGGTTTGAT 250
|||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 237 AAGATTGAGAATATCAACAGTCGTCAAGTCACTTTCTCTAAGA-GACGAAACGGTTTGAT 295
Query 251 GAAGAAGGCTAAAGAGCTTTCGATTCTCTGTGACGCCGAGGTTGCTCTTATCATCTTCTC 310
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 CAAGAAGGCTAAAGAGCTTTCGATTCTCTGTGACGCCGAGGTTGCTCTTATCATCTTCTC 355
Query 311 CAGCACCGGCAAGATTTACGATTTCTCCAGCGGCTG 346
|||||||||||||||||||||||||||||||| |||
Sbjct 356 CAGCACCGGCAAGATTTACGATTTCTCCAGCGTCTG 391
Score = 52.8 bits (28), Expect = 1e-05
Identities = 31/32 (97%), Gaps = 1/32 (3%)
Strand=Plus/Plus
Query 1 ATTTGATCAATTTCTAAAGAAAACCCCT-CCT 31
|||||||||||||||||||||||||||| |||
Sbjct 16 ATTTGATCAATTTCTAAAGAAAACCCCTTCCT 47
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76204427310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5