BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486190
Length=639
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57450.1 | Symbols: | unknown protein; Has 65 Blast hits to... 863 0.0
> AT3G57450.1 | Symbols: | unknown protein; Has 65 Blast hits
to 65 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr3:21261934-21262622 FORWARD
LENGTH=689
Length=689
Score = 863 bits (467), Expect = 0.0
Identities = 611/673 (91%), Gaps = 40/673 (6%)
Strand=Plus/Plus
Query 1 ATCGTCTCCGTCct-ctctctctctctTCACGAGAAAGAGCAG--AAATAACAAATAG-A 56
||||||||||| || |||||||||| | ||||||||||||||| ||| |||| |||| |
Sbjct 1 ATCGTCTCCGT-CTCCTCTCTCTCTATCCACGAGAAAGAGCAGAAAAAAAACATATAGAA 59
Query 57 AAGAAGAA-TTAGAAACAATAGATTCTTCAAGGAAATGGGGAAATACACGGAGATGTTGG 115
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AAGAAGAATTTAGATACAATAGATTCTTCAAGGAAATGGGGAAATACACGGAGATGTTGG 119
Query 116 ACGCCGGCGTGAGAATCGCGGCGAGGTTTCATTCACACTGTCCTCAGACGGCTCGTCTTT 175
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 120 ACGTCGGCGTGAGAATCGCTGCGAGGTTTCATTCACACTGTCCTCAGACGGCTCGTCTTT 179
Query 176 ATTACCATCCTCCATCCGACGGCCATCACCATCACGGCGGAGTCAAAGATCTAATCGGAG 235
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 180 ATTACCATCCTCCATCCGACAACCATCACCATCACGGCGGAGTCAAAGATTTAATCGGAG 239
Query 236 GTGGTGGGGTT-TTGGGGTCGGGTCAAGATTCGACCGGTTTGGTTGGTGGTTTAGGAACC 294
||||||||||| ||||| || |||||| ||||||||||||||||||||||||||||||||
Sbjct 240 GTGGTGGGGTTCTTGGG-TCAGGTCAAAATTCGACCGGTTTGGTTGGTGGTTTAGGAACC 298
Query 295 GGAAC------TACTGGTGGTTGCGGTATCAAATCTTCTCAAG-GATACGATGACGCTAG 347
||||| |||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct 299 GGAACCGGAACTACTGGTGGTTGCGGTATCAAATCTTCTCAAGTG-TATGATGACGCTAG 357
Query 348 AGATCTCTTGTTATTCTCTGTTATTTGATTTAATT-ATTTGACGAA-A-------T-ATT 397
|||||||||||||||||||||| |||||||||||| |||||||||| | | |||
Sbjct 358 AGATCTCTTGTTATTCTCTGTTGTTTGATTTAATTTATTTGACGAACACAAAAAATTATT 417
Query 398 -----------GGTTGGTGCGGGAGAGAGATTTCATGAGCGTTTGGTTGTGCTTTTTTAA 446
|||||||| |||||||||||||||||||||||||||||| |||| ||
Sbjct 418 ATAATTTTTTTGGTTGGTGTTGGAGAGAGATTTCATGAGCGTTTGGTTGTG-TTTTC-AA 475
Query 447 TTATTATTGAGAAAACTGTATGTTCTTGAGAGGATTTGTGATACTATTTAATCATCTCTG 506
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TTATTATTGAGAAAATTGTATGTTCTTGAGAGGATTTGTGATACTATTTAATCATCTCTG 535
Query 507 GATTCCAAAATTTTCTGGGGATAAATGGATGTTGATGAGAAATTAAATTTGATTAATTAT 566
|||||||||| ||||||||||| | ||||||||||||||||||||| ||||||| |||||
Sbjct 536 GATTCCAAAAATTTCTGGGGATTATTGGATGTTGATGAGAAATTAA-TTTGATTCATTAT 594
Query 567 TTTTGTTTGACTTCGTTCGGATTTAGGTTGCCGCATCTTTGGTTTAAACCCTAAATTTAT 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 TTTTGTTTGACTTCGTTCGGATTTAGGTTGCCGCATCTTTGGTTTAAACCCTAAATTTAT 654
Query 627 TGTCGAAGACTTT 639
|||||||||||||
Sbjct 655 TGTCGAAGACTTT 667
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30843766258
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5