BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486194
Length=967
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57480.1 | Symbols: | zinc finger (C2H2 type, AN1-like) fam... 1343 0.0
AT5G48205.1 | Symbols: | zinc ion binding | chr5:19546937-1954... 189 4e-47
> AT3G57480.1 | Symbols: | zinc finger (C2H2 type, AN1-like) family
protein | chr3:21277936-21279354 REVERSE LENGTH=1132
Length=1132
Score = 1343 bits (727), Expect = 0.0
Identities = 800/834 (96%), Gaps = 9/834 (1%)
Strand=Plus/Plus
Query 136 TCGAAAGCTCGGTCTCAACAATGGGGACTCCAGAATTTCCAGATCTAGGG-AAACACTGC 194
||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||
Sbjct 216 TCGAAAGCTCGGTCTCAACAATGGGAACTCCAGAATTTCCAGATCT-GGGTAAACACTGC 274
Query 195 TCCGTCGATTATTGCAAACAGATCGATTTCTTGCCCTTCACATGCGATCGCTGCCTTCAG 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 275 TCCGTCGATTATTGCAAACAGATCGATTTCTTGCCCTTCACATGCGATCGCTGCCTTCAG 334
Query 255 GTGTTTTGTCTGGATCATCGTAGCTATATGAAACACGATTGTCCAAAAGGAAACAGAGGA 314
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 GTGTATTGTCTGGATCATCGTAGCTATATGAAACACGATTGTCCAAAAGGAAACAGAGGA 394
Query 315 GATGTCACTGTGGTTATCTGTCCTTTATGTGCTATAGGAGTTAGATTAAACCCTGACGAA 374
||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||
Sbjct 395 GATGTCACTGTGGTTATTTGTCCATTATGTGCTAAAGGAGTTAGATTAAACCCTGACGAA 454
Query 375 GATCCCAACATTACCTGGGAGAAACATGTTAATACAGATTGTGATCCCTCTAACTACGAA 434
||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 455 GATCCCAACATCACCTGGGAGAAACATGTTAATACAGACTGTGATCCATCTAACTACGAA 514
Query 435 AAAGCTGTCAAGAAGAAGAAATGTCCTGTTCCTAGATGCAGAGAACTCTTGACATTCTCT 494
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 AAAGCTGTCAAGAAGAAGAAATGTCCTGTTCCTAGATGCAGAGAACTCTTGACATTCTCC 574
Query 495 AACACTATAAAATGTCGAGATTGCAGCATCGATCATTGTTTGAAACATCGGTTTGGACCT 554
|| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 575 AATACTATTAAATGTCGAGATTGTAGCATCGATCATTGTTTGAAACATCGGTTTGGACCT 634
Query 555 GATCATAGTTGTTCTGGACCCAAGAAGCCTGAGTCGAGTTTCTCATTCATGGGTTTCTTG 614
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 635 GATCATAGTTGTTCTGGACCCAAGAAGCCTGAATCGAGTTTCTCATTCATGGGTTTCTTG 694
Query 615 AGTACAAACACAAAAGAAGCTCCTCCACCATCATCATCATCGTCTTCTTCGAGATGGTCT 674
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 695 AGTACAAACACAAAAGAAGCTCCT---GCATCATCATCA---TCTTCTTCGAGATGGTCT 748
Query 675 AGTCTTTTCGCTTCTGCGGAAGCAAGTATAAGCAGACTCGGTAACGATATTAGCCAGAAG 734
||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 749 AGTCTTTTCGCTTCTGCGGAAGCAAGTATTAGTAGACTCGGTAACGATATAAGCCAGAAG 808
Query 735 TTACAGTTTGCGAGTGGTAGTGATGGTAATTCAGGGAAAACGCAAGAGAGGAATGGAAAA 794
||||||||||||||||| | |||||| ||||||| |||||||||||||||||||||||||
Sbjct 809 TTACAGTTTGCGAGTGGCAATGATGGCAATTCAGAGAAAACGCAAGAGAGGAATGGAAAA 868
Query 795 CAGAATTGTGGCAAAGTTACAGTTGATGTTTGTCCTAAATGTAGCAGAGGGTTTCGTGAT 854
|||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct 869 CAGAATTGTGGCAAAGTTACGGTTGATGTTTGTCCCAAATGTAGTAGAGGGTTTCGTGAT 928
Query 855 CCGGTGGATCTATTGAAGCATATCGATAAGGATCATCGTGGCACTTCTAAAGCCTAGAAG 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 929 CCGGTGGATCTATTGAAGCATATCGATAAGGATCATCGTGGCACTTCTAAAGCCTAGAAG 988
Query 915 AAGGGAAGTGGTTTTATATTTGTGTGATT-GTATCATTCTTTGTAACACAGCCA 967
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 989 AAAGGAAGTGGTTTTATATTTGTGTGATTTGTATCATTCTTTGTAACACAGCCA 1042
> AT5G48205.1 | Symbols: | zinc ion binding | chr5:19546937-19547787
REVERSE LENGTH=576
Length=576
Score = 189 bits (102), Expect = 4e-47
Identities = 121/130 (93%), Gaps = 2/130 (2%)
Strand=Plus/Plus
Query 156 ATGGGGACTCCAGAATTTCCAGATCTAGGGAAACACTGCTCCGTCGAT-TATTGCAAACA 214
||||||||||| |||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 1 ATGGGGACTCCGGAATTTCCAGATCTAGGGAAACACTGCTCCGTCGATGT-TTGCACGCA 59
Query 215 GATCGATTTCTTGCCCTTCACATGCGATCGCTGCCTTCAGGTGTTTTGTCTGGATCATCG 274
|||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||| |
Sbjct 60 GATCGATTTCTTGCCCTTCACATGTGATCGCTGCCTTCAGGTGCTTTGTTTGGATCATTG 119
Query 275 TAGCTATATG 284
||||||||||
Sbjct 120 TAGCTATATG 129
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47320566474
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5