BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486196
Length=657
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57500.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 560 5e-159
> AT3G57500.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G26520.1);
Has 51 Blast hits to 51 proteins in 11 species: Archae - 0;
Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 50; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:21281848-21282591
FORWARD LENGTH=744
Length=744
Score = 560 bits (303), Expect = 5e-159
Identities = 439/499 (88%), Gaps = 31/499 (6%)
Strand=Plus/Plus
Query 1 TAAAGTCGATATAATTAACCTCA--CTCTCTAC-T---TCAAGTCTTAAACCTTTGCTCC 54
|||||||||||||||||||| || |||||||| | ||||||||||||||||||||||
Sbjct 22 TAAAGTCGATATAATTAACCCCACTCTCTCTACTTCAATCAAGTCTTAAACCTTTGCTCC 81
Query 55 CACAAGCTCACCTGAAA------------CTC-TCT-A-TCT-TCTCTCTCATGTTCGGA 98
||||||||||||||||| ||| ||| | || |||||||||||||||||
Sbjct 82 CACAAGCTCACCTGAAACTCTCTCTCTTCCTCTTCTCACACTGTCTCTCTCATGTTCGGA 141
Query 99 GTCACGGCAAGGCTCGATGACCAACTCAGCACCACAACCACACCAACCACCATTTACATA 158
| ||||||||||||||||||||||||||| | |||||||||||||||||||| |||
Sbjct 142 GCCACGGCAAGGCTCGATGACCAACTCAG-----C-ACCACACCAACCACCATTTATATA 195
Query 159 GACCCACCCTCCCAAGACCAGCCGAGTCTCAACTCGGACCACCGTTCAATAGAAACACTC 218
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 196 GACCCACCCTCCCAAGACCAGCCGAGTCACAACTCGGACCACCGTTCAATAGAAACACTC 255
Query 219 GTCGTCGTCTTAGCCGTCATCACCATTTTATCTGTCTTAGCCGGCGTGTTCGCTCGGCTT 278
|| || |||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 256 GTTGTTGTCTTAGCCGTCATCACCATTTTATCCGTCTTAGCCGGCGTTTTCGCTCGGCTT 315
Query 279 TGTGGCGGCCGTCATTTATCTGACGGCGGAGACCACGACATCGAAGGTTGGGTTGAGAGA 338
|||||||| || || |||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 316 TGTGGCGGTCGCCACTTATCTCACGGCGGAGACCACGACATCGAAGGTTGGGTCGAGAGA 375
Query 339 AAGTGTCGTAGCTGCATTGATGCCGGTGTTCCCACTGTCGCCGCCGCTCCTCCACCTCC- 397
||||||||||||||||| |||||||| |||| | || |||| |||||| |||||||
Sbjct 376 AAGTGTCGTAGCTGCATCGATGCCGGCATTCCTGCCGTATCCGCTGCTCCTTCACCTCCA 435
Query 398 --GCCGCCACCGGCAGCAGCGGCGGAAGAGCAGAGTAAGCCAGCAGCCGATGATCAAACC 455
|||||||||| ||||| |||||||||||| |||||||||||||||||| || ||||||
Sbjct 436 CCGCCGCCACCGCCAGCAACGGCGGAAGAGCGGAGTAAGCCAGCAGCCGAGGAGCAAACC 495
Query 456 AAGAAGTGAAGTaaaaaaa 474
|||||||||||||||||||
Sbjct 496 AAGAAGTGAAGTAAAAAAA 514
Score = 255 bits (138), Expect = 3e-67
Identities = 170/185 (92%), Gaps = 3/185 (2%)
Strand=Plus/Plus
Query 475 CATTAATTTCGAGGACATCTTCCtttttttGTTATGTACCTTAAGTCTACGGACATTGAT 534
||||||||| || |||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 561 CATTAATTTTGAAAACATGTTCCTTTTTTTGTTATGTACCTT-AGTCTACGGACATTGAT 619
Query 535 TTCGGAATTTCCTCGGATGTTTTCTGATTATT-ATTTCTTTCAAAAGAAAGAA-AAAAGT 592
|||||||||||||| |||||||| |||||||| || ||||||||||||||||| |||||
Sbjct 620 TTCGGAATTTCCTCAGATGTTTTATGATTATTTATGTCTTTCAAAAGAAAGAACAAAAGC 679
Query 593 AAAGTTCTTTGTGTACTTTTAACTTTAAATAAATCCGTTGAGATTAGAGACCAACGGCAT 652
|||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 680 AAAGTTCTTTGTCAACTTTTAACTTTAAATAAATCCGTTGAGATTAAAGAGCAACGGCAT 739
Query 653 TAACC 657
|||||
Sbjct 740 TAACC 744
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31747980904
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5