BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486197
Length=1584
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57510.1 | Symbols: ADPG1 | Pectin lyase-like superfamily pr... 2248 0.0
> AT3G57510.1 | Symbols: ADPG1 | Pectin lyase-like superfamily
protein | chr3:21283338-21285941 REVERSE LENGTH=1603
Length=1603
Score = 2248 bits (1217), Expect = 0.0
Identities = 1493/1618 (92%), Gaps = 52/1618 (3%)
Strand=Plus/Plus
Query 1 TCATATTACATAATCCCAAATAAAG-CA-GCAAACATTCTCATCTTACTCACAAGGAAAC 58
|||||||||| ||||||||| ||| || |||||||||||||||| ||||||||| ||||
Sbjct 1 TCATATTACACAATCCCAAA-CAAGACAGGCAAACATTCTCATCTCACTCACAAGAAAAC 59
Query 59 AACACTCATTC-TTTTT-T----AA---A-C-----CGAAATGGCCCGTTGTTGCAGACT 103
| ||| ||||| ||||| | || | | |||||||||||||||||||||||
Sbjct 60 AGCACACATTCTTTTTTCTGCAAAACCGATCAAAATCGAAATGGCCCGTTGTTGCAGACA 119
Query 104 TCTTGCTGTTTTCTTATGCGTTCTTTTGATGCTCTCTTTGTGTGAAGCTTTGAGTAGCAA 163
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 120 TCTTGCTGTTTTCTTATGCGTTCTTTTGATGCTCTCGTTGTGTAAAGCTTTGAGTAGCAA 179
Query 164 CGTTGATGATGGATATGGTCATGAAGATGGAAGTTTCGAATCCGATAGCTTGATCAAGCT 223
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 180 CGTTGATGATGGATATGGTCATGAAGATGGAAGTTTTGAATCCGATAGCTTGCTCAAGCT 239
Query 224 TAACAACGATGATGTTCTTAGCTTGAAAAGCTCCGATGAAACCACTTTGGAATCATCAAC 283
||||||||||||||||||||||||| |||||| || ||||||||||||||| |||||||
Sbjct 240 CAACAACGATGATGTTCTTAGCTTGATAAGCTCAGACGAAACCACTTTGGAAGCATCAAC 299
Query 284 TGTTAGTGTTTCAAACTTCGGAGCCAAAGGAGATGGAAAAACCGATGATACTCAGGCCTT 343
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 300 CGTTAGTGTTTCAAACTTCGGAGCCAAAGGAGATGGAAAAACTGATGATACTCAGGCCTT 359
Query 344 CAAGAAAGCATGGAAAAAAGCATGTTCAACAAATGGAGTTACTACTTTCTTAATACCTAA 403
||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||
Sbjct 360 CAAGAAAGCATGGAAGAAAGCATGTTCAACAAATGGAGTTACTACTTTCTTGGTTCCTAA 419
Query 404 AGGGAAGACTTATCTCCTTAAGTCTACTAGATTTAGAGGCCCATGCAAATCAC-TACGTA 462
||| |||||||||||||||||||||||| |||||||||||||||||||||| | ||||||
Sbjct 420 AGGAAAGACTTATCTCCTTAAGTCTACTCGATTTAGAGGCCCATGCAAATC-CTTACGTA 478
Query 463 ACTTTCAGATCCTAGGCACTTTATCAGCATCTACGAAACGATCAGATTACAAAGACAAAA 522
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 479 ACTTTCAGATCCTAGGCACTTTATCAGCATCTACGAAACGTTCAGATTACAAAGACAAAA 538
Query 523 ACCATTGGCTTATCTTAGAGGACGTTAACAATCTATCAATCGATGGTGGCTCGACGGGGA 582
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 539 ACCATTGGCTTATCTTAGAGGACGTTAACAATCTATCAATCGACGGTGGCTCGACGGGAA 598
Query 583 TTATTAATGGCAACGGCAAAATCTGGTGGCAGAACTCATGCAAAATCGATAAATCTAAGC 642
|||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 599 TTATTAATGGCAACGGAAAAACCTGGTGGCAGAACTCATGCAAAATCGACAAATCTAAGC 658
Query 643 CATGCACAAAAGCGCCAACGGCTCTTACTTTATACAATCTAAAGAATTTGAATGTGAAGA 702
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 659 CATGCACAAAAGCTCCAACGGCTCTTACTTTATACAATTTAAAGAATTTGAATGTGAAGA 718
Query 703 ATCTGAGGGT-AAGAAATGCGCAGCAGATTCAGATTTCAATTGAGAAATGCAACAAAGTT 761
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 ATCTGAGGGTGAA-AAATGCGCAGCAGATTCAGATTTCAATTGAGAAATGCAACAAAGTT 777
Query 762 GAAGTTAGTAATGTTGTGATCACTGCTCCCGGCGATAGTCCCAACACCGATGGTATCCAT 821
|||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 778 GAAGTTAGTAATGTTGAGATCACTGCTCCGGGCGATAGTCCCAACACAGATGGTATCCAT 837
Query 822 ATCACTAATACTCAAAACATTCGAGTCTCCAACTCAGATATCGGAACAGGTGATGATTGT 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 ATCACTAATACTCAAAACATTCGAGTCTCCAACTCAGATATCGGAACAGGTGATGATTGT 897
Query 882 ATATCCATTGAGGATGGAACGCAAAATCTTCAAATCTTTGATTTAACTTGCGGCCCTGGT 941
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 898 ATATCCATTGAGGATGGAACGCAAAATCTTCAAATCTTTGATTTAACTTGCGGCCCCGGT 957
Query 942 CACGGAATCAGCATTGGGAGCTTGGGGGACGACAATTCGAAAGCTTATGTCTCGGGAATT 1001
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 CACGGGATCAGCATTGGGAGCTTGGGGGACGACAATTCGAAAGCTTATGTCTCGGGAATT 1017
Query 1002 AATGTGGATGGTGCAAAGTTCTCTGAGAGTGATAATGGAGT-ACGGATTAAGACTTATCA 1060
|||||||||||||| ||||||||||||||||| |||||||| | ||||||||||||||||
Sbjct 1018 AATGTGGATGGTGCTAAGTTCTCTGAGAGTGACAATGGAGTTA-GGATTAAGACTTATCA 1076
Query 1061 GGGAGGATCAGGGACTGCCAAGAACATTAAATTTCAAAACATTCGAATGGAAAATGTCAA 1120
|||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1077 GGGAGGATCAGGAACTGCCAAGAACATTAAATTTCAAAATATTCGAATGGAAAACGTCAA 1136
Query 1121 GAATCCGATCATAATCGACCAGAACTACTGCGACAAGGACAAATGCGAAGAACAAG-GAT 1179
|||||||||||||||||||||| |||||||||||||||||||||||||||| |||| | |
Sbjct 1137 GAATCCGATCATAATCGACCAGGACTACTGCGACAAGGACAAATGCGAAGACCAAGAG-T 1195
Query 1180 CCGCCGTGCAAGTGAAAAACGTTGTGTACAAGAACATATCCGGTACAAGCGCGACGGATG 1239
| || ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 1196 CGGCAGTGCAAGTGAAAAACGTTGTGTACAAGAACATATCTGGTACGAGCGCTACGGATG 1255
Query 1240 TGGCGATAACGTTGAATTGCAGTGAGAAGTATCCATGCCAAGGGATTGTGCTTGAGAACG 1299
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1256 TGGCGATAACGTTGAATTGCAGCGAGAAGTATCCATGTCAAGGGATTGTGCTTGAGAACG 1315
Query 1300 TGAACATAAAAGGAGGAACAGCTTCTTGCAAAAATGCCAATGTTAAAAATCAGGGCACCG 1359
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1316 TGAAAATAAAAGGAGGAACAGCTTCTTGCAAAAATGCCAATGTTAAAAATCAAGGCACCG 1375
Query 1360 TTTCTCCTAAATGCTCTTAA--G--CTAATTATGTAatatacatatacacgtataaatat 1415
|||||||||||||||||||| | ||||||||||||| ||||| ||| ||| ||
Sbjct 1376 TTTCTCCTAAATGCTCTTAACTGAGCTAATTATGTAATGCACATACACA--TATT--TAC 1431
Query 1416 atagaaatacatatatatatatatacacacatgtatattgtact-ctacgtattgcttct 1474
||||| || ||||| | |||||||| || ||||||||||||| | | | |||||||||
Sbjct 1432 ATAGATATGCATAT-T-TATATATAG-CA--TGTATATTGTACTAC-ATGCATTGCTTCT 1485
Query 1475 taatatat--a-ta--g-tatatGGGAAAATAGTAGAAAGATTTGTTGTCCACATATAAA 1528
||||| || | || | |||||| |||||||| |||||||||||| | |||||||||
Sbjct 1486 TAATACATGTAGTAAAGATATATGCAAAAATAGTCGAAAGATTTGTT-T--ACATATAAA 1542
Query 1529 ATTACCAACATTGATTATTA--GTATTTCCATGAATAAATTAATAAGATTATTTGTCT 1584
|| ||||| ||| ||| ||| |||||| |||||||||| ||||||||||||||||||
Sbjct 1543 ATCACCAATATTTATTGTTATTGTATTTTCATGAATAAAGTAATAAGATTATTTGTCT 1600
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78212449110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5