BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486202
Length=1154
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57540.1 | Symbols: | Remorin family protein | chr3:2130139... 1687 0.0
AT2G41870.1 | Symbols: | Remorin family protein | chr2:1747086... 396 3e-109
> AT3G57540.1 | Symbols: | Remorin family protein | chr3:21301397-21303061
REVERSE LENGTH=1254
Length=1254
Score = 1687 bits (913), Expect = 0.0
Identities = 1084/1164 (93%), Gaps = 22/1164 (2%)
Strand=Plus/Plus
Query 1 GTTACACGAATTATTAAATCCTAATCATTGATTATTTATGCCTTACCTTGTATCTTCTCC 60
|||||||||||||||||| |||||||||||||||||||| ||| ||||||| ||||||||
Sbjct 1 GTTACACGAATTATTAAAACCTAATCATTGATTATTTATTCCTGACCTTGTTTCTTCTCC 60
Query 61 TTCCATCACCTAATTATAATCAGACCTAAACTATCTAATTGCAACACTCCACTACTAACT 120
||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||
Sbjct 61 TTCCATCACCTAATTATAATCAGACCTAAACTAGCTAATTACAACACTCCACTACT-ACT 119
Query 121 ACTACTACAACCCTTCTGATGTTGACTTTGTACGGTCAAGAAAGTTCAACGGAGAACTCC 180
||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 120 ACTACTACAACTCTTCTGATGTTGACTTTGTACGGTCAAGAAAGGTCACCGGAGAACTCC 179
Query 181 ACCACAAGTACGGCCGATGCTTCCGATCGCCGGGATGAGACACCGCCGTCGGAAACCGTC 240
|||||||||||| |||||||||||||||||||||||||||| ||| ||||||| | |||
Sbjct 180 ACCACAAGTACGACCGATGCTTCCGATCGCCGGGATGAGACGCCGTCGTCGGAGATAGTC 239
Query 241 GTGAGAGATATTCACGCGATGACAACGACGACGGAGCTTACTCGGCCACAACAAAGGGG- 299
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 240 GTGAGAGATATTCACGCGATGACGACGACGACAGAGCTTACTCGGCCACAACAAAGGGGA 299
Query 300 --AGGAGGAGGATACTTGTCTCCGTCGAGGTCTATTGCTTTTAGCGACGGAACTACTTCT 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TCAGGAGGAGGATACTTGTCTCCGTCGAGGTCTATTGCTTTTAGCGACGGAACTACTTCT 359
Query 358 TCCGGTGAGAATTTCACCACCGTGAGCAGAGAATTCAACGCTCTAGTTATCGCCGGATCT 417
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 360 TCCGGTGAGAATTTCACCACCGTGAGCAGAGAGTTCAACGCTCTAGTCATCGCCGGATCT 419
Query 418 TCCATGGACAACAACAGTAACGGAAGTAACCAGTCAGGTGGTCATCGTGACGTCATACGT 477
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 420 TCCATGGACAACAACAGTAACGGAACTAACCAATCAGGTGGTCATCGTGACGTCATACGT 479
Query 478 GACGAAAGGAACGAGCTGACTAGGATCGGCGAAAACGATGACGTTGGTTATCATGATCAG 537
|| ||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 480 GATGAAAGAAACGAGCTGACTAGGATCGGCGAAAACGATGACGTTGGTGATCATGGTCAG 539
Query 538 GTGCCTGAGGAAGATACGAATCCTTGGGCGATTGTACCGGACGGTTACAATAACCGGGAT 597
||||||||||| ||| | ||||| ||||||||||||||||||| |||||| ||||||||
Sbjct 540 GTGCCTGAGGAGGATTCAAATCCATGGGCGATTGTACCGGACGATTACAACAACCGGGAC 599
Query 598 GGTTCTGAGAATAATATTGTGTTGACGTCGTCATCGGGTGGTCAGAATCGGATGGTGACG 657
||||| |||||||||||||||||| | ||||||| ||||||||||| ||||||||||||
Sbjct 600 GGTTCAGAGAATAATATTGTGTTG--G-CGTCATCAGGTGGTCAGAACCGGATGGTGACG 656
Query 658 ACTGCTTCGGTGCAGAGGGTGAAGAGAGAAGAGGTGGAAGCGAAGATAACGGCGTGGCAA 717
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 657 ACTGCTTCGGTGCAGAGGGTGAAGAGAGAAGAGGTGGAAGCAAAGATAACGGCGTGGCAA 716
Query 718 ACGGCGAAAGTGGCTAAGATTAATAATAGGTTTAAGAGACAAGACGCCGTTATTAACGGT 777
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 ACGGCGAAGGTGGCTAAGATTAATAATAGGTTTAAGAGACAAGACGCCGTTATTAACGGT 776
Query 778 TGGTTGAATGAGCAGGTTCATAAAGCTAACTCTTGGATGAAGAAAATCGAGAGGAAATTG 837
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 777 TGGTTGAATGAGCAGGTTCATAGAGCTAACTCTTGGATGAAGAAAATCGAGAGGAAACTG 836
Query 838 GAAGATAGGAGAGCAAAGGCGATGGAGAAAACACAAAACAAAGTGGCAAAAGCTCAAAGG 897
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 837 GAAGATAGGAGAGCGAAGGCGATGGAGAAAACACAAAACAAAGTGGCAAAAGCTCAGAGG 896
Query 898 AAGGCGGAGGAGAGGAGAGCGACGGCAGAAGGAAAAAGAGGGACGGAGGTTGCGAGGGTG 957
|||||||||||||||||||| ||||| ||||| ||| ||||||||||||||||||||||
Sbjct 897 AAGGCGGAGGAGAGGAGAGCCACGGCGGAAGGTAAACGAGGGACGGAGGTTGCGAGGGTT 956
Query 958 CTTGAAGTCGCTAATCTAATGAGAGCCGTGGGACGACCTCCGGCCAAACGATCCTTCTTC 1017
|||||||| |||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 957 CTTGAAGTTGCTAATCTCATGAGAGCCGTTGGACGACCTCCGGCCAAACGATCATTCTTC 1016
Query 1018 ACT-TTCTCCTAGCTAAGCTATTGCTAGTTTTAATTACATCAAAATTTCTTAATATATAT 1076
|| || |||||||||||||||| ||||||||| ||||||| |||| ||| |||||||||
Sbjct 1017 TCTCTT-TCCTAGCTAAGCTATTACTAGTTTTAGTTACATCCAAATGTCTCAATATATAT 1075
Query 1077 AGGCTGCAAACGGACATTTTCTGATGGGAATCAATGTGTGTATA--TATA----GAATGT 1130
||||| | | ||||||||| ||||||||||||||| |||| |||| ||||||
Sbjct 1076 AGGCT--A--C---CATTTTCTGTTGGGAATCAATGTGTATATAACTATATATAGAATGT 1128
Query 1131 AAGAGTTTTAAAGGTACTGATATA 1154
||||||||||||||||||||||||
Sbjct 1129 AAGAGTTTTAAAGGTACTGATATA 1152
> AT2G41870.1 | Symbols: | Remorin family protein | chr2:17470866-17472936
REVERSE LENGTH=1495
Length=1495
Score = 396 bits (214), Expect = 3e-109
Identities = 316/366 (86%), Gaps = 4/366 (1%)
Strand=Plus/Plus
Query 665 CGGTGCAGAGGGTGAAGAGAGAAGAGGTGGAAGCGAAGATAACGGCGTGGCAAACGGCGA 724
||||||| || || ||||| |||||||||||||||||||||||||||||||| ||||| |
Sbjct 878 CGGTGCAAAGAGTTAAGAGGGAAGAGGTGGAAGCGAAGATAACGGCGTGGCAGACGGCAA 937
Query 725 AAGTGGCTAAGATTAATAATAGGTTTAAGAGACAAGACGCCGTTATTAACGGTTGGTTGA 784
|| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
Sbjct 938 AACTGGCTAAGATTAATAACAGGTTTAAGAGGGAAGACGCCGTTATTAACGGTTGGTTTA 997
Query 785 ATGAGCAGGTTCATAAAGCTAACTCTTGGATGAAGAAAATCGAGAGGAAATTGGAAGATA 844
|||| || ||| | || || |||||||||||||||||||| |||||||| | || || |
Sbjct 998 ATGAACAAGTTAACAAGGCCAACTCTTGGATGAAGAAAATTGAGAGGAAGCTAGAGGAGA 1057
Query 845 GGAGAGCAAAGGCGATGGAGAAAACACAAAACAAAGTGGCAAAAGCTCAAAGGAAGGCGG 904
| | |||||| |||||||||||||| |||||||| ||||| ||||| || ||||| ||||
Sbjct 1058 GAAAAGCAAAAGCGATGGAGAAAACGCAAAACAATGTGGCGAAAGCGCAGAGGAAAGCGG 1117
Query 905 AGGAGAGGAGAGCGACGGCAGAAGGAAAA-AGAGGGACGGAGGTTGCGAGGGT-GCTTGA 962
||||||| |||||||||||||| || ||| |||||||| |||||||| | || | ||||
Sbjct 1118 AGGAGAGAAGAGCGACGGCAGA-GGCAAAGAGAGGGACAGAGGTTGCAAAAGTAG-TTGA 1175
Query 963 AGTCGCTAATCTAATGAGAGCCGTGGGACGACCTCCGGCCAAACGATCCTTCTTCACTTT 1022
||| |||||||| ||||||||| | ||||| ||||| |||||||| ||||||||| ||||
Sbjct 1176 AGTTGCTAATCTCATGAGAGCCCTTGGACGTCCTCCTGCCAAACGCTCCTTCTTCTCTTT 1235
Query 1023 CTCCTA 1028
||||||
Sbjct 1236 CTCCTA 1241
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56626214760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5