BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486203
Length=1761
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57550.2 | Symbols: AGK2, GK-2 | guanylate kinase | chr3:213... 2747 0.0
AT2G41880.1 | Symbols: GK-1, AGK1 | guanylate kinase 1 | chr2:1... 1048 0.0
> AT3G57550.2 | Symbols: AGK2, GK-2 | guanylate kinase | chr3:21306723-21309464
FORWARD LENGTH=1777
Length=1777
Score = 2747 bits (1487), Expect = 0.0
Identities = 1683/1773 (95%), Gaps = 32/1773 (2%)
Strand=Plus/Plus
Query 1 GGCCGCTTGTCTCCAAGTTGTCTTGGGACTCGTCGACGATGCACACATATATTTACTTAT 60
|||||||||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct 1 GGCCGCTTGTCTCCAAGTTGTCTTGGGACTCGTCGACGATGCACAC----A--TA-GTAT 53
Query 61 AACATTTATATATTCTTCTCGTAGCCGAACCAGAAAATTTTCAGAGAG---AT--AA-TC 114
||||||||||||||||| |||||||||||| |||||| ||||||| || || ||
Sbjct 54 ---ATTTATATATTCTTCTCCTAGCCGAACCAG-AAATTTCCAGAGAGATAATCAAATTC 109
Query 115 AATTGCATAAAAACTGAATCTTGTTGTTGAAAAAGAGCAC-C-CATAAACTTGTTTCTCA 172
|||||||||||||||||||||||||||||||||||||| | | || ||||||||||||||
Sbjct 110 AATTGCATAAAAACTGAATCTTGTTGTTGAAAAAGAGCTCTCACA-AAACTTGTTTCTCA 168
Query 173 ATTCTCTCGTTTGGCCC-TTTTCTTCACAATCTGCCGATATAAATAAGCATCTTCTCGTC 231
|||||||| |||||||| ||||| ||||||||||| |||||||||| || ||||||| ||
Sbjct 169 ATTCTCTCCTTTGGCCCTTTTTC-TCACAATCTGCGGATATAAATACGCTTCTTCTCCTC 227
Query 232 CTCTAATAAGCC-AATTCGATCCAAAAGCTCTCGTCTTTTC-TCTGCGTTTTCCGGTGTT 289
| ||||| | || |||||||||| |||||||||||| |||| || |||||||||||||||
Sbjct 228 CGCTAATTACCCAAATTCGATCCTAAAGCTCTCGTC-TTTCTTCAGCGTTTTCCGGTGTT 286
Query 290 CATATTCGAGGCTGTGTTGTGTCTTCTTGGAGGCATAGAAAATCTCTATGGGAGAAGCAC 349
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 287 CATATTCGAGGCTGTGTTGTGTCTTCTTGGAGGCTTAGAAAATCTCTATGGGAGAAGCAC 346
Query 350 CAGCTTTCTTTGTGGATCATCTGGAGGATGGATACACCAATGGCTTTGGTGTCAAATCCG 409
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 347 CAGCTTTCTTTGTGGATCATCTGGAGAATGGATACACCAATGGCTTTGGTGTCAAATCCG 406
Query 410 AGCCTAAGAACAGAGATACTTCTGTCCAAATTGGGGATCGATCCTTTGTGATTGGTGGAA 469
||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||
Sbjct 407 AGCCTAAGAACAGAGATACATCTGTGCTTATTGGGGATCGATCCTTTGTGATTGGTGGAA 466
Query 470 ATCATGAAGGAAACCCATTGTTCCTTGGTGTTCAGATTCATGACAAAATCACTAACAAGT 529
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 467 ATCATGAAGGAAACCCATTGTTCCTTGGTGTTCAGATTCATGACAAAGTCACTAACAAGT 526
Query 530 GGTCTAGCCCTACTGTTCTTGGAACCGGCCCTAAACCCTGCAAGGGTTACTCTGCCATTG 589
|||| || |||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 527 GGTCCAGTCCTAGTGTTCTTGGAACTGGCCCTAAACCCTGCAAGGGTTACTCTGCCATTG 586
Query 590 TTCTTCCAAAAGGTCGGATTTTGGTTATCAAAAAAGGCTCAGCTTCTGATGACTCCATTT 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 TTCTTCCAAAAGGTCGGATTTTGGTTATCAAAAAAGGCTCAGCTTCTGATGACTCCATTT 646
Query 650 GGTTCCTTGAGGTTGACACTCCTTTTATCCGGGAACAAAAGAAATTGCTTGGAAGAGAGG 709
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 GGTTCCTTGAGGTGGATACTCCTTTTATCCGGGAACAAAAGAAATTGCTTGGAAGAGAGG 706
Query 710 TTGTTGCTTGGAGTAAAGGAGTAAGGGGAAATGCTGAGAAGCCTATTGTTATAAGCGGTC 769
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 707 TTGTTGCTTGGAGTAAAGGAGTAAGGGGAAATGCAGAGAAGCCTATTGTTATAAGCGGTC 766
Query 770 CTTCTGGAGTTGGAAAAGGAACACTTATATCGATGCTTATGAAGGAGTTTCCTTCAATGT 829
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 767 CTTCTGGAGTTGGAAAAGGAACACTTATATCGATGCTCATGAAGGAGTTTCCTTCAATGT 826
Query 830 TTGGGTTCTCTGTGAGCCATACAACTCGAGCTCCAAGGTGTATGGAGAAGAATGGTGTTC 889
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 827 TTGGGTTCTCTGTGAGCCACACGACTCGAGCTCCAAGGTGTATGGAGAAGAATGGTGTTC 886
Query 890 ACTACCATTTCACTGATAAGACTGTTATGGAGAAAGAAATCAAAGACGGGAAGTTTCTCG 949
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 887 ACTACCATTTCACTGATAAGACTGTTATGGAGAAAGAAATCAAAGATGGGAAGTTTCTCG 946
Query 950 AGTTTGCGTCTGTTCATGGTAATCTATACGGAACCAGCATTGAATCTGTTGAGGTTGTAA 1009
|||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct 947 AGTTTGCGTCTGTTCACGGCAATCTATACGGAACCAGCATTGAATCCGTTGAGGTTGTAA 1006
Query 1010 CAGATTCAGGAAAGAGATGCATTTTGGACATTGATGTTCAAGGAGCGAGGTCAGTGAAGG 1069
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1007 CAGATTCAGGAAAGAGATGCATTTTGGATATTGATGTTCAAGGAGCGAGGTCAGTGAAGG 1066
Query 1070 CGAGTTCACTGGATGCGATATTCATATTCGTTTGTCCTCCTTCAATGAAGGAACTTGAAG 1129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 CGAGTTCACTGGATGCGATATTCATATTCGTTTGTCCTCCTTCAATGAAGGAACTTGAAG 1126
Query 1130 ATCGGCTTCGTGCTCGAGGAACCGAGACAGAGGAGCAGATCCAAAAGCGGCTTAGAAACG 1189
||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1127 ATCGGCTTCGTGCCCGAGGAACAGAGACAGAGGAGCAAATCCAAAAGCGGCTTAGAAACG 1186
Query 1190 CTGAAGCAGAGATCAAAGCGGGGAAATCCTCTGGCATTTTTGAACACATTCTGTATAATG 1249
|||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1187 CTGACGCAGAGATCAAAGCAGGGAAATCCTCTGGCATTTTTGAACACAAACTGTATAATG 1246
Query 1250 ACAACCTTGAGGAATGCTACAAGAACCTTAAGAACCTCTTGGGGATAAACGACCTTGCTC 1309
|||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||
Sbjct 1247 ACAACCTTGAGGAATGCTACAAGACCCTTAAGAATCTCTTGGGGATTAACGACCTTGCTC 1306
Query 1310 CTGTGAATGGTGTAGAAGCAGTAGAAGGGATCGATCTGCCCAAGGAGCACACAGTAACAA 1369
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1307 CTGTGAATGGTGTAGAAGCAGTAGAAGGGATCAATCTGCCCAAGGAGCACACAGTAACAA 1366
Query 1370 AGATGGATGACAAGATTTTGATTCAAGAAACAGGAGAAGGAACCAAAAACAAAATGATCG 1429
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1367 AGATGGATGACAAGATTTTGATTCAAGAAACAGGAGAAGGAACCAAGAACAAAATGATCG 1426
Query 1430 TGTTGGATCTATCTTCTATTAACGGGGGAGCACCGGGAAGAACAAGAGGGATCGTTCTGG 1489
|||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1427 TGTTGGATTTATCTTCAATCAACGGGGGAGCACCGGGAAGAACAAGAGGGATCGTTCTGG 1486
Query 1490 ACACGGTTAAGTCCAGTTGACAATGAGTCTTTTTATTTCGCTGCGGGAA-GCTAAGGAGG 1548
|||||||||||||||||||||||||||||||||||||| |||||||||| ||| | |||
Sbjct 1487 ACACGGTTAAGTCCAGTTGACAATGAGTCTTTTTATTTGGCTGCGGGAAAGCT--G-AGG 1543
Query 1549 AAACATTTAGATGATGATGATGAACATTGCTCGTTGTTTTATTATGACTGTGGTTGGAAG 1608
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1544 AAACATTTAGACGATGATGATGAACATTGCTCGTTGTTTTAT---GACTGTGGTTGGAAG 1600
Query 1609 GTAGTGTTTTGCGATCACTAGATAGGCACtgatgatgatgattatgattatgatgattca 1668
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1601 GTAGTGTTATGCGATCACTAGATAGGCACTGATGATGATGATTATGATTATGATGATTCA 1660
Query 1669 agaaagtcatgatctcttctgagagatgatgGAATAAGGtttttttGTTCATTTTACTGA 1728
|||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||
Sbjct 1661 AGAAAGTCATGATCTCTTATGAGAGATGATGGAATAAGGTTATTTTGTTCTTTTTACTGA 1720
Query 1729 TAAAGATTTTGTTTAATCTAAATCTTGAAAGAA 1761
||||||||||||||||| |||||||||||||||
Sbjct 1721 TAAAGATTTTGTTTAATTTAAATCTTGAAAGAA 1753
> AT2G41880.1 | Symbols: GK-1, AGK1 | guanylate kinase 1 | chr2:17474619-17477223
FORWARD LENGTH=1556
Length=1556
Score = 1048 bits (567), Expect = 0.0
Identities = 999/1204 (83%), Gaps = 44/1204 (4%)
Strand=Plus/Plus
Query 298 AGGCTGTGTTG-TG-TCTTCTTGGAGGCATAGAAAATCTCTATGGGAGAAGCACCAGCTT 355
||||||||||| || ||||||||||||||||||| | |||||||||||||| |||||
Sbjct 205 AGGCTGTGTTGTTGTTCTTCTTGGAGGCATAGAATCTTTCTATGGGAGAAGCTCCAGCAG 264
Query 356 TCTTTGTGGATCATCTGGAGGATGGATACACCAATGGCT-T-TGGTGTCAAATCCGAGCC 413
| || |||||||||| |||| | ||| || ||||||| | | | |||| ||||| || ||
Sbjct 265 TATTAGTGGATCATCCGGAGAACGGACACTCCAATGG-TGTCT-GTGTGAAATCTGAACC 322
Query 414 TA-AGAACA--GAGATACTTCTGTCCAAATTGGGGATCG-ATCCTTTGTGATTGGTGGAA 469
| |||||| |||||| | ||| | | || ||||| || ||| |||| |||||||
Sbjct 323 -AGAGAACACTGAGATA--ACAGTCGATGTCGGCGATCGAAT-ATTTTTGATCGGTGGAA 378
Query 470 ATCATG-AAGGAAACCCATTGTTCC-TTGGTGTTCAGATTCATGACAAAATCACTAACAA 527
||||| |||| || | ||| |||| |||| ||||||||| |||||||||||| ||||||
Sbjct 379 CTCATGAAAGG-AA-CAATTTTTCCATTGGGGTTCAGATTTATGACAAAATCAGTAACAA 436
Query 528 GTGGTCTAGCCCTACTGTTCTTGGAACCGGCCCTAAACCCTGCAAGGGTTACTCTGCCAT 587
|||| ||| |||| ||| ||||| || || ||||| ||| ||||||| ||||| || |
Sbjct 437 CTGGTTTAGTCCTATTGTGCTTGGGACAGGTCCTAAGCCCAGCAAGGGGTACTCCGCGTT 496
Query 588 TGTTCTTCCAA-AAGGTCGGATTTTGGTTATCAAAAAAGGCTCAGCTTCTG--ATGACTC 644
||||||| || ||||||||||||||||||| |||||||| ||| | || | | |||||
Sbjct 497 TGTTCTT-GAACAAGGTCGGATTTTGGTTATTAAAAAAGGTTCA-CCTC-GCAACGACTC 553
Query 645 CATTTGGTTCCTTGAGGTTGACACTCCTTTTATCCGGGAACAAAAGAAATTGCT-TGGAA 703
||| |||||||| ||||| || | ||||| | | |||||||| ||||| || || ||||
Sbjct 554 CATCTGGTTCCTCGAGGTCGATAGTCCTTATGTGCGGGAACAGAAGAAGTTACTAAGGAA 613
Query 704 GAGAGGTTGTTGCTTGGAGTAAAGGAGTAAGGGGAAATGCTGAGAAGCCTATTGTTATAA 763
| || |||||||||||||||||||| || || || |||||||||||||||||||||||||
Sbjct 614 G-GAAGTTGTTGCTTGGAGTAAAGGTGTGAGAGGCAATGCTGAGAAGCCTATTGTTATAA 672
Query 764 GCGGTCCTTCTGGAGTTGGAAAAGGAACACTTATATCGATGCTTATGAAGGAGTTTCCTT 823
||||||||||||| || || |||||||| |||||||| ||||||||||||||||||||||
Sbjct 673 GCGGTCCTTCTGGTGTGGGCAAAGGAACGCTTATATCAATGCTTATGAAGGAGTTTCCTT 732
Query 824 CAATGTTTGGGTTCTCTGTGAGCCATACAACTCGAGCTCCAAGGTGTATGGAGAAGAATG 883
|||||||||||||||||||||| || ||||||||| |||| |||| |||||||| | | |
Sbjct 733 CAATGTTTGGGTTCTCTGTGAGTCACACAACTCGATCTCCGAGGTCTATGGAGATGGACG 792
Query 884 GTGTTCACTACCA-TTTCACTGATAAGACTGTTATGGAGAAAGAAATCAAAGACGGGAAG 942
||||||| || || ||| ||||||| | |||||||||||||||||||||||||| |||
Sbjct 793 GTGTTCATTATCACTTTG-CTGATAAAAAAGTTATGGAGAAAGAAATCAAAGACGGAAAG 851
Query 943 TTTCTCGAGTTTGCGTCTGTTCATGGTAATCTATACGGAACCAGCATTGAATCTGTTGAG 1002
||||| |||||||| |||||||| |||||||| || |||||||||||||| || |||||
Sbjct 852 TTTCTTGAGTTTGCTTCTGTTCACGGTAATCTCTATGGAACCAGCATTGAGTCCGTTGAA 911
Query 1003 GTTGTAACAGATTCAGGAAAGAGATGCATTTTGGACATTGATGTTCAAGGAGCGAGGTCA 1062
| ||||||||||||||||||||||| ||| | |||||||||||||| || || |||||
Sbjct 912 GCGGTAACAGATTCAGGAAAGAGATGTATTCTCGACATTGATGTTCAGGGGGCAAGGTCT 971
Query 1063 GTGA-AGGCGAGTTCACTGGATGCGATATTCATATTCGTTTGTCCTCCTTCAATGAAGGA 1121
|||| || ||||||| || ||||| |||||||||||||| ||||| ||||||||||| ||
Sbjct 972 GTGAGAG-CGAGTTCTCTTGATGCCATATTCATATTCGTATGTCCCCCTTCAATGAAAGA 1030
Query 1122 ACTTGAAGATCGGCTTCGTGCTCGAGGAACCGAGACAGAGGAGCAGATCCAAAAGCGGCT 1181
|||||||||||||| |||||| |||||||||||||||||||||| || |||||||||||
Sbjct 1031 GCTTGAAGATCGGCTCCGTGCTAGAGGAACCGAGACAGAGGAGCAAATTCAAAAGCGGCT 1090
Query 1182 TAGAAACGCTGAAGCAGAGATCAAAGCGGGGAAATCCTCTGGCATTTTTGAACACATTCT 1241
|||||| ||||| ||||||||||||| |||| |||||| || ||||| | | |||| |
Sbjct 1091 TAGAAATGCTGAGGCAGAGATCAAAGAAGGGATATCCTCGGGTATTTTCGGTCTCATTTT 1150
Query 1242 GTATAATGACAACCTTGAGGAATGCTACAAGAACCTTAAGAACCTCTTGGGGATAAACG- 1300
||||||||||||||||||||||||||||||||| || ||||| ||||||||| || | |
Sbjct 1151 GTATAATGACAACCTTGAGGAATGCTACAAGAAGCTCAAGAATCTCTTGGGGCTAGATGG 1210
Query 1301 ACCTTGCTCCTGTGAATGGTGTAGAAGCAGTAGAAGGGATCGATCTGCCCAAGGAGCACA 1360
|| | |||| ||| |||||||||||| | |||| |||||| |||| |||| ||| ||
Sbjct 1211 AC-TCGCTCATGTCAATGGTGTAGAA--A-TAGAGGGGATCAATCTTCCCATTGAGTACG 1266
Query 1361 CAGTAAC-AAAGATGGATGACAAGATT-TTGATTCAAGAAACAGGAGAAGGAACCAAAAA 1418
||||| | ||| ||||| || ||||| || ||||||||||||||| ||| ||| || |
Sbjct 1267 CAGTATCTAAA-ATGGAAGATAAGATCATT-ATTCAAGAAACAGGAAAAGAAAC-AAGGA 1323
Query 1419 CAAAATGATCGT-GTTGGATCTATCTTCTATTAACGGGGGAGCACCGGGAAGAACAAGAG 1477
| || ||| || || |||| ||||||| |||| || ||||||||||| |||||||| |
Sbjct 1324 -ATAA-GATTGTAGT-GGATATATCTTCGCTTAATGGAGGAGCACCGGGTAGAACAAGGG 1380
Query 1478 GGAT 1481
||||
Sbjct 1381 GGAT 1384
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87097945575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5