BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486205
Length=1118
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57560.1 | Symbols: NAGK | N-acetyl-l-glutamate kinase | chr... 1696 0.0
> AT3G57560.1 | Symbols: NAGK | N-acetyl-l-glutamate kinase | chr3:21310825-21312312
REVERSE LENGTH=1488
Length=1488
Score = 1696 bits (918), Expect = 0.0
Identities = 1054/1121 (94%), Gaps = 3/1121 (0%)
Strand=Plus/Plus
Query 1 ATGGCCACCGTCACATCCAATGCTTCACCTAAATCCTTCTCCTTCTCTATTTCCAATCCT 60
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 106 ATGGCCACCGTCACATCCAATGCTTCACCTAAATCCTTCTCCTTCACTGTTTCCAATCCT 165
Query 61 CTGAAATCACTAATCCCCAACAAATCACCATCTCTCAACTATCCACCTCG---CAAGAAC 117
| ||| | ||||||||||||||||||||||||||| |||||| |||| |||||||
Sbjct 166 TTCAAAACCCTAATCCCCAACAAATCACCATCTCTCTGTTATCCAACTCGCAACAAGAAC 225
Query 118 CATCACCGTCTAGGTTTATCGATAAACGCCACCGTATCAACACCACCTTCAATTGCAACC 177
||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||
Sbjct 226 CATCACCGTCTAGGTTTCTCGATAAAAGCCACCGTATCAACACCACCTTCAATCGCAACC 285
Query 178 GGAAATGCACCTTCACCGGATTACAGAGTGGAGATTCTCTCTGAATCTTTACCGTTTATC 237
||||||||||||||||||||||||||||| ||||||||||| |||||| |||| ||||||
Sbjct 286 GGAAATGCACCTTCACCGGATTACAGAGTCGAGATTCTCTCCGAATCTCTACCATTTATC 345
Query 238 CAAAAATTCCGTGGTAAAACCATAGTTGTCAAATACGGCGGCGCAGCAATGACTTCGCCG 297
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 CAAAAATTCCGAGGTAAAACCATAGTTGTCAAATACGGCGGCGCAGCAATGACTTCGCCG 405
Query 298 GAGCTCAAATCCTCCGTCGTCAGCGATCTCGTGCTCCTCGCGTGCGTTGGTCTTCGTCCG 357
|| || |||||||||||||| ||||||||||||||||||||||| || ||||||||||||
Sbjct 406 GAACTTAAATCCTCCGTCGTAAGCGATCTCGTGCTCCTCGCGTGTGTCGGTCTTCGTCCG 465
Query 358 ATCCTCGTTCATGGTGGTGGTCCTGATATTAACCGTTACCTGAAACAACTCAACATTCCA 417
||||||||||| |||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 466 ATCCTCGTTCACGGTGGTGGTCCTGACATCAACCGTTACCTGAAACAACTCAACATCCCA 525
Query 418 GCTGAGTTTCGTGACGGACTTCGTGTCACTGACGCCACAACAATGGAGATCGTCTCTATG 477
|||||||||||||||||||| |||||||| ||||| || || ||||||||||||||||||
Sbjct 526 GCTGAGTTTCGTGACGGACTACGTGTCACCGACGCAACGACGATGGAGATCGTCTCTATG 585
Query 478 GTTTTAGTCGGAAAAGTTAATAAGAATCTTGTTTCGCTTATTAACGCCGCCGGAGCAACC 537
|||||||||||||| || ||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 586 GTTTTAGTCGGAAAGGTCAATAAGAATCTGGTTTCTCTTATTAACGCCGCCGGAGCCACC 645
Query 538 GCCGTGGGGTTATCAGGACACGACGGTCGTCTTCTCACTGCACGGCCTGTCCCCAATTCA 597
|| ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 646 GCTGTGGGGTTATCAGGACACGACGGTCGTCTTCTCACAGCACGACCTGTTCCCAATTCA 705
Query 598 GCTCAATTAGGTTTCGTTGGTGAAGTTGCAAGAGTTGATCCATCTGTGTTACGTCCGCTT 657
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 GCTCAGTTAGGTTTCGTTGGTGAAGTTGCAAGAGTTGATCCATCTGTGTTACGTCCGCTC 765
Query 658 GTTGATTACGGTTATATTCCAGTGATTGCCTCTGTTGCTGCTGATGATTCTGGTCAAGCT 717
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 GTTGATTATGGTTACATTCCAGTGATTGCCTCTGTTGCTGCTGATGATTCTGGTCAAGCT 825
Query 718 TACAATATCAATGCAGATACAGTTGCTGGAGAGCTTGCGGCGGCGCTTGGAGCTGAGAAA 777
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 826 TACAATATCAATGCAGATACAGTTGCTGGAGAGCTTGCGGCCGCGCTTGGAGCTGAGAAA 885
Query 778 TTGATTCTGTTGACTGATGTGGCTGGAATCTTGGAGAATAAAGAGGATCCGAGTAGTTTG 837
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 886 CTGATTCTGCTGACTGATGTGGCTGGAATCTTGGAGAATAAAGAGGATCCAAGTAGTTTG 945
Query 838 GTGAAGGAGATTGATATAAAGGGAGTGAAGAAGATGATTGAAGATGGTAAAGTTGCTGGT 897
| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 946 ATAAAGGAGATTGATATAAAAGGAGTGAAGAAGATGATTGAAGATGGGAAAGTTGCTGGT 1005
Query 898 GGGATGATTCCTAAGGTGAAGTGTTGTATAAGGTCTCTTGCTCAAGGAGTTAAGACGGCT 957
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1006 GGGATGATTCCTAAAGTGAAGTGTTGTATAAGGTCTCTAGCTCAAGGAGTTAAGACTGCT 1065
Query 958 AGTATTATTGATGGAAGGAGACAACATTCTCTGCTTCATGAGATTATGTCTGATGAAGGA 1017
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1066 AGTATTATTGATGGAAGGAGACAACATTCTTTGCTTCATGAGATTATGTCTGATGAAGGA 1125
Query 1018 GCTGGAACTATGATTACTGGATAAATTTGGTGCAATGGGTGATCATCAAAGTTGAGATTT 1077
|||||||||||||||||||||||| |||| || ||||||||||||||||||||||| |||
Sbjct 1126 GCTGGAACTATGATTACTGGATAAGTTTGCTGTAATGGGTGATCATCAAAGTTGAGTTTT 1185
Query 1078 TTGTATTTGAGAATGCCAGTGTTTGTTAATTAGGATGTCAA 1118
|||||||||||||||||| ||||| || |||||||||||||
Sbjct 1186 TTGTATTTGAGAATGCCAATGTTTCTTCATTAGGATGTCAA 1226
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54818995140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5